ライフサイエンスコーパス: bacterial gene

1 probe DNAs to detect and quantify the target bacterial gene.

2 n between the prophage at the 3' end and the bacterial gene.

3 ants can be engineered to produce PG using a bacterial gene.

4 he millions of sequenced yet uncharacterized bacterial genes.

5 eria and nonchemical agents for detection of bacterial genes.

6 re studies of both porin and other essential bacterial genes.

7 most likely involved an extensive influx of bacterial genes.

8 n the posttranscriptional regulation of many bacterial genes.

9 ge genomes as well as through acquisition of bacterial genes.

10 yodysenteriae chromosome and were flanked by bacterial genes.

11 imited largely to the ancient acquisition of bacterial genes.

12 selection for essential versus nonessential bacterial genes.

13 ed proteins and not due to CpG motifs in the bacterial genes.

14 ablative therapies that use viral, yeast, or bacterial genes.

15 l density, gyrase may regulate expression of bacterial genes.

16 ich results in upregulation of the necessary bacterial genes.

17 ociated with reduced functional diversity of bacterial genes.

18 ic genes and bacteriophages commonly harbour bacterial genes.

19 Shifts in bacterial gene abundances after polydextrose and SCF sup

20 h the growing number of completely sequenced bacterial genes, accurate gene prediction in bacterial g

21 We find that 17 bacterial genes acquired nonsynonymous mutations in mult

22 Encoded by bacteriophage and phage-derived bacterial genes, Acrs prevent CRISPR-mediated inhibition

23 Bacterial genes activated in macrophages 4 h postinfecti

24 that allowed inducible deletion of specific bacterial genes after the pathogen had been phagocytosed

25 e end-product analysis and 16S ribosomal RNA bacterial gene amplification for bacterial taxa identifi

26 switches control the expression of essential bacterial genes and are important models for RNA-small m

27 enzyme responsible for transcription of all bacterial genes and early viral genes.

28 rial diversity and altered representation of bacterial genes and metabolic pathways.

29 AHLs) to regulate the expression of specific bacterial genes and operons.

30 We now have a better appreciation of the bacterial genes and products that are involved in pathol

31 ination is essential to proper expression of bacterial genes and, in many cases, to the regulation of

32 us, podovirus, and siphovirus gene products, bacterial genes and, in one case, a dUTPase from a eukar

33 ut, significantly, contained no mammalian or bacterial genes and/or promoter elements within the tran

34 genes have the highest sequence identity to bacterial genes, and 12 belong to clusters of orthologou

35 es without known homology to other published bacterial genes, and seven clones appeared to be homolog

36 cription, acting at the 5'UTR of hundreds of bacterial genes, and that its suppression by sRNAs is a

37 lts obtained for eukaryotic genes, essential bacterial genes appear to be more conserved than are non

38 We found that very few bacterial genes appeared to be specifically required for

39 Many bacterial genes are controlled by metabolite sensing mot

40 However, an increasing number of bacterial genes are found to exhibit an 'all-or-none' co

41 However, a small number of bacterial genes are known to be inactivated upon IGE int

42 The majority of bacterial genes are located on the leading strand, and t

43 Bacterial genes are often differentially expressed in re

44 r understanding the molecular basis by which bacterial genes are regulated.

45 ghput insertion sequencing to identify which bacterial genes are required during host colonization.

46 demonstrate that communities of avian-borne bacterial genes are shaped by the assemblage of co-exist

47 l factors that could influence expression of bacterial genes are the concentrations of single element

48 Bacterial genes are typically grouped into operons defin

49 We previously identified a bacterial gene (arsI) responsible for aerobic demethylat

50 Bacterial genes associated with a single trait are often

51 iptional regulator H-NS selectively silences bacterial genes associated with pathogenicity and respon

52 show that Akt activation may be regulated by bacterial genes associated with phagosomal escape.

53 Moreover, we observed that bacterial genes associated with responses to infectious

54 eukaryotic expression plasmids encoding the bacterial gene beta-galactosidase (beta gal).

55 red to be homologous to five different known bacterial genes but are still being characterized.

56 Our analysis of bacterial genes by sequence-driven saturation mutagenesi

57 Here, we show that bacterial genes can rapidly shift between multiple regul

58 ession in other tissues, the expression of a bacterial gene, celE', encoding endoglucanase E' (EGE'),

59 pecificities of several enzymes encoded by a bacterial gene cluster allowed the correct prediction of

60 ntation of Escherichia coli cells carrying a bacterial gene cluster encoding all pathway enzymes need

61 Surprisingly, 10% of bacterial gene clusters lacked modular organization, and

62 hich are potentially distinct from all other bacterial gene clusters to date.

63 This is the first example of a heterologous bacterial gene complementing a B. burgdorferi mutant.

64 ysis of Bray-Curtis distances indicated that bacterial gene composition was more similar in participa

65 One particularly significant group of bacterial genes consists of those that are essential for

66 Bacterial gene content variation during the course of ev

67 We demonstrate that the bacterial gene dddD is required for this process and tha

68 The IL-27-induced expression of the anti-bacterial gene deleted in malignant brain tumor 1 (DMBT1

69 genetic detection method that can detect the bacterial gene directly from patient stools using a piez

70 ectable marker (RAM), which enables one-step bacterial gene disruption at near 100% efficiency after

71 phages and phage-like particles can transfer bacterial genes, driving bacterial evolution and promoti

72 ression systems that allow the regulation of bacterial genes during an infection are valuable molecul

73 The regulation and timely expression of bacterial genes during infection is critical for a patho

74 sed system to tightly regulate expression of bacterial genes during intracellular infection by Lister

75 Many HGT-derived bacterial genes encode proteins that fill gaps in critic

76 tissues is thought to be facilitated by the bacterial gene encoded extracellular hyaluronate lyase (

77 ognition through overexpression of ribB This bacterial gene encodes the 4-dihydroxy-2-butanone-4-phos

78 larial parasite Brugia malayi has acquired a bacterial gene encoding ferrochelatase (BmFeCH), the ter

79 this study, we describe the use of ipt, the bacterial gene encoding the enzyme isopentenyl transfera

80 otated based solely on their homology to the bacterial genes encoding adenosylcobyric acid and adenos

81 Bacterial genes encoding enzymes involved in the breakdo

82 a gene, mrkJ, that is related to a family of bacterial genes encoding phosphodiesterases.

83 Bacterial genes encoding products involved in metabolism

84 Bacterial genes encoding PTPS-like proteins with active-

85 Bacterial genes encoding the PHB pathway enzymes were se

86 ata, we devised a sequence pattern to detect bacterial genes encoding UDP-GlcA decarboxylase activity

87 By modelling the diversity of bacterial genes encoding virulence and antimicrobial res

88 cytometry-based screening method to identify bacterial genes expressed in vitro and repressed during

89 ortem pimonidazole immunohistochemistry, and bacterial gene expression analyses were used to assess w

90 to study the effects of host environments on bacterial gene expression and metabolic pathways.

91 we characterized the direct effects of SA on bacterial gene expression and showed that SA inhibits in

92 gand is critical given their broad impact on bacterial gene expression and their potential as antibio

93 siological changes that result in changes in bacterial gene expression are often accompanied by chang

94 Genome-wide studies of bacterial gene expression are shifting from microarray t

95 rbon storage regulator A) globally regulates bacterial gene expression at the post-transcriptional le

96 riptional regulator that plays a key role in bacterial gene expression by binding AU-rich sequences a

97 Regulation of bacterial gene expression by small RNA (sRNA) molecules

98 light of compelling evidence that human and bacterial gene expression can be regulated through RNA s

99 g the effects of the external environment on bacterial gene expression can provide valuable insights

100 To gain a more complete understanding of how bacterial gene expression changes over time in a primate

101 This spatial control of bacterial gene expression could be used to 'print' compl

102 nity-wide quantitative proteomic analyses of bacterial gene expression coupled with forward genetic s

103 l)-S-homoserine lactone (3O-C12) to regulate bacterial gene expression critical for P. aeruginosa per

104 e widespread use of GO and KEGG gene sets in bacterial gene expression data analysis, the SEED and Mi

105 MicrobesOnline gene sets in the analysis of bacterial gene expression data may improve statistical p

106 Bacterial gene expression depends not only on specific r

107 Determining bacterial gene expression during infection is fundamenta

108 Recent advances in studies of bacterial gene expression have brought the realization t

109 ches designed to study nuclear/cytosolic and bacterial gene expression have not been broadly applied

110 s, termed quorum sensing (QS), that regulate bacterial gene expression in a cell population-dependent

111 are small molecules that ordinarily regulate bacterial gene expression in response to cell density or

112 d be adapted for real-time quantification of bacterial gene expression in situ.

113 we combine these technologies and show that bacterial gene expression in the mammalian gut can be pr

114 acteria, allowing the targeted regulation of bacterial gene expression in the rhizosphere for deliver

115 ress 260.8 epitope production but did affect bacterial gene expression in ways emblematic of a dimini

116 (p)ppGpp] as a signaling molecule to control bacterial gene expression involved in long-term survival

117 bridization has allowed a global analysis of bacterial gene expression occurring in human tissues dur

118 Regulatory networks controlling bacterial gene expression often evolve from common origi

119 ate immune pathways correlating with altered bacterial gene expression patterns.

120 Hfq regulates bacterial gene expression post-transcriptionally by bind

121 vered global regulatory system that controls bacterial gene expression post-transcriptionally.

122 onstitute a large and heterogeneous class of bacterial gene expression regulators.

123 a, these microRNA-containing particles alter bacterial gene expression to affect host immunity.

124 ori within this niche requires regulation of bacterial gene expression to cope with the environmental

125 o identify potential virulence determinants, bacterial gene expression was monitored by differential

126 nslation is considered a defining feature of bacterial gene expression(1,2).

127 NA is an important element in the control of bacterial gene expression, but relatively few specific t

128 onent systems, are involved in regulation of bacterial gene expression, chemotaxis, phototaxis, and v

129 les collected for quantitative bacteriology, bacterial gene expression, complete blood cell counts, h

130 ir modified forms have been shown to inhibit bacterial gene expression, representing a potential for

131 Small RNAs are integral regulators of bacterial gene expression, the majority of which act pos

132 and since they may play regulatory roles in bacterial gene expression, we investigated the effect of

133 mechanism could have broader implications in bacterial gene expression.

134 in Hfq is a central player in the control of bacterial gene expression.

135 nes and, in many cases, to the regulation of bacterial gene expression.

136 acteria, where it plays an important role in bacterial gene expression.

137 lms lead to physiological heterogeneities in bacterial gene expression.

138 ns) in simulations that faithfully represent bacterial gene expression.

139 g the effects of chronic gastric exposure on bacterial gene expression.

140 unds referred to as autoinducers to regulate bacterial gene expression.

141 12) as a quorum-sensing molecule to regulate bacterial gene expression.

142 stems sense and relay these signals to drive bacterial gene expression; specifically, to modulate vir

143 the system design was based on a successful bacterial gene finder, Glimmer.

144 show the presence of a large, diverse set of bacterial genes for cellulose and xylan hydrolysis.

145 Bacterial genes for molybdenum-containing and tungsten-c

146 16S ribosomal DNA bacterial genes from DNA isolated from advanced noma les

147 16S ribosomal DNA (rDNA) bacterial genes from DNA isolated from subgingival plaqu

148 etic detection method that directly detected bacterial genes from stool in < 40 min without the need

149 This resource will be useful for inferring bacterial gene function and provides a draft reference o

150 hniques which can be applied to the study of bacterial gene function.

151 jor barrier to its widespread use to dissect bacterial gene function.

152 ruction is that the majority of archaeal and bacterial genes have conserved orthologs in other, often

153 We used homology to a bacterial gene, hypothesized to encode a related functio

154 going separation, to drive expression of the bacterial genes iaaL and iaaM, we have shown that it is

155 a signal capable of triggering expression of bacterial genes important for host pathogen interaction.

156 Pylori strains and bacterial genes important for survival in a model of the

157 n instrumental in determining the roles of a bacterial gene in a biological process.

158 what may determine the global arrangement of bacterial genes in a genome beyond the operon level.

159 ir highly significant sequence similarity to bacterial genes in BLAST searches, and by their lack of

160 Endosymbiotic theory posits that bacterial genes in eukaryotic genomes entered the eukary

161 Non-coding antisense RNAs regulate bacterial genes in response to nutrition or environmenta

162 e newly identified RNA elements that control bacterial genes in response to preQ1 (7-aminomethyl-7-de

163 oteins control the transcription of specific bacterial genes in response to the levels of AHL signal.

164 itrogen oxides and that the absence of these bacterial genes in some way diminishes the ability of mi

165 ch result from integration and expression of bacterial genes in the plant genome.

166 The detection of sulphur-cycle related bacterial genes in this study suggests a putative role f

167 ed to investigate the importance of specific bacterial genes in virulence, to identify components of

168 Of these, 4,424 (i.e. 89%) are bacterial genes, including several Pseudomonads that hav

169 s are important for regulating expression of bacterial genes, including those which are important to

170 activation of the anti-inflammatory and anti-bacterial gene indoleamine 2,3-dioxygenase (IDO1) is dep

171 To define the critical nature of the bacterial genes, infection experiments were carried out

172 The organization of bacterial genes into operons was originally ascribed to

173 tifies evidence for lateral gene transfer of bacterial genes into the E. histolytica genome, the effe

174 Based on sequence similarities to a bacterial gene involved in capsule synthesis we have clo

175 Small RNAs (sRNAs) regulate bacterial genes involved in environmental adaptation.

176 Proportions of bacterial genes involved in fatty acid biosynthesis were

177 Bacterial genes involved in fatty acid biosynthesis, amo

178 sequencing (INSeq) could be used to identify bacterial genes involved in phage binding.

179 he preQ(1) riboswitch, found in the 5'UTR of bacterial genes involved in synthesis of the Q precursor

180 Deletion of the bacterial genes involved in tetrathionate respiration or

181 known as RFN elements, direct expression of bacterial genes involved in the biosynthesis and transpo

182 This differs from bacterial genes involved in the catabolism of other chlo

183 screens and expression studies have revealed bacterial genes involved in the developmental pathway an

184 animal models to identify potential host and bacterial genes involved in the establishment of the car

185 To discover bacterial genes involved in the infection and differenti

186 one biosynthesis through the introduction of bacterial genes is a natural form of genetic engineering

187 The expression of most bacterial genes is controlled at the level of transcript

188 Horizontal acquisition of bacterial genes is presently recognized as an important

189 Bacterial gene islands add to the genetic repertoire of

190 tion, and the blockage depends on a group of bacterial genes known as the hmsHFRS operon.

191 use whole genome sequencing to characterise bacterial genes known to be carried on mobile genetic el

192 tegration, and expression of plasmid-encoded bacterial genes located on the transferred DNA (T-DNA) i

193 and where the products of granuloma-specific bacterial genes may thwart the host's attempt to complet

194 y, a model plant system was transformed with bacterial genes (merA for mercuric reductase and merB fo

195 Arabidopsis thaliana, to express a modified bacterial gene, merBpe, encoding organomercurial lyase (

196 Tomato plants expressing the bacterial gene nahG, encoding salicylate hydroxylase, di

197 nt progress has led to the identification of bacterial genes necessary for colonization.

198 rves as a host cue to increase expression of bacterial genes needed for growth.

199 Regulation of bacterial gene networks by small non-coding RNAs (sRNAs)

200 Despite the importance of operons in bacterial gene networks, the relationship between their

201 we obtained direct genetic evidence that all bacterial genes of the thiamine pathway are functional.

202 ded by a gene belonging to a large family of bacterial genes of unknown function, and the gene is pre

203 constructed pathway is composed by yeast and bacterial genes operating coordinately to scavenge thiam

204 olution, the similarity between archaeal and bacterial gene/operon transcriptional regulators might h

205 Bacterial gene organization into operons therefore refle

206 th up-regulation of known hypoxia-associated bacterial genes (P < .001).

207 y contribute to the regulation of endogenous bacterial genes, particularly during the interaction of

208 Phytoproduction of PG using a bacterial gene paves the way for further genetic manipul

209 istance is mediated through mutations in the bacterial gene pncA.

210 finity cytochrome bd oxidase as an essential bacterial gene product for mosquito growth.

211 The suggestion that bacterial gene products are 'delivered to' and 'perceive

212 at our understanding of the function of most bacterial gene products is lacking.

213 also serve to regulate expression of certain bacterial gene products such as those involved in sporul

214 980s and early 1990s that the mechanisms and bacterial gene products used to induce this complex brus

215 e receptors (TLRs) mediate host responses to bacterial gene products.

216 eins called translocases or "flippases." The bacterial genes proposed to encode these translocases ha

217 methods use these discrepancies to identify bacterial genes recently acquired by horizontal transfer

218 anscription initiation is a critical step in bacterial gene regulation and is often controlled by tra

219 Small RNAs are principal elements of bacterial gene regulation and physiology.

220 s reveals important organizing principles of bacterial gene regulation and presents a conceptual and

221 ctors and sigma factors play a major role in bacterial gene regulation by guiding the distribution of

222 Fundamental questions in bacterial gene regulation concern how multiple regulator

223 logical, consistent conceptual framework of bacterial gene regulation, focusing on transcription ini

224 rogress in understanding the fundamentals of bacterial gene regulation, our knowledge remains limited

225 Despite its important role in the bacterial gene regulation, the binding mode of Ler to DN

226 ein (CRP) represents one of the paradigms of bacterial gene regulation.

227 g a balance between the OFF and ON states in bacterial gene regulation.

228 gulons) are emerging as an important area of bacterial gene regulation.

229 e sigma factors as a ubiquitous mechanism of bacterial gene regulation.

230 suppression by sRNAs is a widespread mode of bacterial gene regulation.

231 The bacterial gene regulatory regions often demonstrate dist

232 catalytic cofactors of the glmS ribozyme, a bacterial gene-regulatory RNA that controls cell wall bi

233 ) are major contributors to the diversity of bacterial gene repertoires.

234 bacterium, to establish a genome-wide map of bacterial genes required for colonization of the Arabido

235 notypically defined M. tuberculosis mutants, bacterial genes required for invasion or survival were d

236 border cells can influence the expression of bacterial genes required for the establishment of plant-

237 sequencing after chemical mutagenesis to map bacterial genes responsible for motility in Exiguobacter

238 ine metagenomes thought to consist mostly of bacterial genes revealed a variety of sequences homologo

239 e levels were increased in subjects with low bacterial gene richness and Bacteroides 2 enterotype, wh

240 RBL-1 shows no significant homologies to any bacterial gene sequence, a potential RBL-1 targeting pro

241 nd shotgun metagenomic sequencing to analyze bacterial gene sequences in bronchoalveolar lavage (BAL)

242 linical microbiologic tests: (i) presence of bacterial gene sequences in prostatic tissue encoding 16

243 a and disease progression, 16S ribosomal RNA bacterial gene sequencing was performed on DNA obtained

244 indicate why YbeY is a member of the minimal bacterial gene set and suggest that it could be a potent

245 Minimal bacterial gene set comprises the genetic elements needed

246 A bacterial gene silencer AT8 was found to be important fo

247 LeuO protein relieves bacterial gene silencer AT8-mediated transcriptional rep

248 Here, we present new algorithms, specific to bacterial gene structures and transcriptomes, for analys

249 re, we present novel algorithms, specific to bacterial gene structures and transcriptomes, for analys

250 method developed in this study is a complete bacterial gene synthesis platform for the quick, accurat

251 other compounds for which the corresponding bacterial gene system was induced in the transcriptome o

252 st (BC-GP) test to identify 12 Gram-positive bacterial gene targets and three genetic resistance dete

253 orine (as chloramine) residual and decreased bacterial gene targets to building inlet concentrations

254 n and alternative start codons, 31 out of 51 bacterial genes tested (61%) could complement a lethal g

255 ura5 mutant or the heterologous hphI gene (a bacterial gene that confers resistance to the aminoglyco

256 nd fucose and the abundance of fucosidase (a bacterial gene that digests fucose moieties) harbored by

257 ithin the living vertebrate gut, identifying bacterial genes that affect these processes, and assessi

258 ing that the phoP regulatory system controls bacterial genes that alter macrophage survival.

259 sed in a chicken infection model to identify bacterial genes that are expressed in infected tissues.

260 Identification and characterization of bacterial genes that are induced during the disease proc

261 polymerase was not "poised" upstream of the bacterial genes that are rapidly induced at the beginnin

262 are complex, involving a large repertoire of bacterial genes that are required for in vivo growth and

263 Current approaches explore bacterial genes that change transcriptionally upon stres

264 Bacterial genes that confer crucial phenotypes, such as

265 ere, we underscore the importance of SNPs in bacterial genes that contribute to the ability of pathog

266 In vivo expression studies reveal many bacterial genes that contribute to the fitness of the or

267 However, the bacterial genes that contribute to these lifestyles have

268 hat these genes are similar to several other bacterial genes that encode broad-specificity flavoprote

269 This was to identify bacterial genes that might be deleted for the developmen

270 In order to identify bacterial genes that provide protection against specific

271 it the rapid and efficient disruption of any bacterial gene, the computational analysis provides new

272 ess of genomics in identifying new essential bacterial genes, there is a lack of sustainable leads in

273 the CapsidCas13a(s) can be applied to detect bacterial genes through gene-specific depletion of bacte

274 454-FLX pyrosequencing of 16S ribosomal RNA bacterial genes to characterize microbiota in stool samp

275 4 null mutant H. pylori strains and analyzed bacterial gene transcription using DNA arrays.

276 nucleatum and E. coli, specifically regulate bacterial gene transcripts, and affect bacterial growth.

277 nt example of foreign gene acquisition via a bacterial gene transfer agent and illustrate the major p

278 the importance of IncQ plasmids as agents of bacterial gene transfer in nature.

279 Biologists have until now conceded that bacterial gene transfer to multicellular animals is rela

280 the initiation and completion of conjugative bacterial gene transfer.

281 hin some eukaryotic germlines may facilitate bacterial gene transfers to eukaryotic host genomes.

282 Here we identify bacterial genes under adaptive evolution by tracking rec

283 ure method to characterize the expression of bacterial genes under conditions mimicking the colonic e

284 Here we identify bacterial genes under local and global selection by test

285 flexneri is regulated by one or more of the bacterial genes under the control of mxiE.

286 rbovirus vectors and agricultural pests, the bacterial genes underlying cytoplasmic incompatibility r

287 oncurrently, the pattern of transcription of bacterial genes underwent dramatic changes.

288 The expression of 34 bacterial genes was substantially altered in brain tissu

289 PCR and Illumina sequencing of the 16S rRNA bacterial gene were performed.

290 herichia coli mutants, we discovered that 29 bacterial genes, when deleted, increase longevity in the

291 genomic sequence was co-integrated with the bacterial gene, whereas to rescue intestinal expression,

292 To identify potential bacterial genes which contribute to E. coli invasion of

293 in the same way of an essential, endogenous bacterial gene will allow the production of recombinant

294 ach to modulate the expression of a specific bacterial gene within the gut by oral administration.

295 itioning of RNA polymerase to transcribe 522 bacterial genes within 4 min of leaving stationary phase

296 suggest 'genetic crosstalk' and movement of bacterial genes within the human body via hitherto poorl

297 It is generally known that bacterial genes working in the same biological pathways

298 engineered Arabidopsis thaliana to express a bacterial gene xplA encoding an RDX-degrading cytochrome

299 Recently, two bacterial genes, yjeA and yjeK, encoding truncated homol

300 Here, we report on the identification of a bacterial gene, yqiC, which is required for efficient UQ