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1 A752 and U2609, that were proposed to form a base pair.
2 tal ions prior to incorporation of a correct base pair.
3 nguishing alleles differing by even a single base pair.
4 sing a steric filter fashioned from a wobble base pair.
5 ient absorption or buffering of at least one base pair.
6 llele counts and frequencies for each target base pair.
7 he entire Hoogsteen edge of the Watson-Crick base pair.
8 NA junction, consequently breaking the first base-pair.
9 NA but which is unusual for the free neutral base pairs.
10 A tertiary structures involving cross-linked base pairs.
11 ed nucleotides with neighboring Watson-Crick base pairs.
12 utY-mediatedadenine excision from G:A or T:A base pairs.
13 g the duplication of upward of three billion base pairs.
14 antiparallel G-tetrads and six i-motif C-C+ base pairs.
15 long reads that contain as many as 2 million base pairs.
16 nts on RNA global fold than non-cross-linked base pairs.
17 owed a 22q11.23 duplication of 1.306 million base pairs.
18 re, and stacking interaction between the end base pairs.
19 aintained to the same extent as canonical WC base pairs.
20 ndant and structurally similar undamaged DNA base pairs.
21 A duplex consisting entirely of Watson-Crick base-pairs.
22 interact with native d-RNA via Watson-Crick base pairing.
23 n as target sites for the 18S rRNA by direct base pairing.
24 logs designed to bind to RNA by Watson-Crick base pairing.
25 partially lack intramolecular complementary base pairing.
26 e at position -1, which is not recognized by base pairing.
27 cterized by the iconical Watson-Crick nucleo-base pairing.
28 based on overall 3' UTR structure formed by base pairing.
29 y an artificial tRNA not dependent on wobble base-pairing.
30 f 8-oxodG, while 3'-preinserted noncanonical base pairs (3'-rA or 3'-rC) on NHEJ repair intermediates
32 s well as improved accuracies for long-range base pairs (500+ nucleotides apart), both of which are w
33 urs, approximately, was associated with a 27-base-pair (95% confidence interval (CI): 6, 48) longer L
37 ing the nucleosomal DNA by approximately two base pairs along the histone octamer accommodates the ne
38 A, the transition pathway primarily involved base paired and intrahelical intermediates with transiti
39 dified RNA oligonucleotides, conducted their base pairing and bioactivity studies, and solved three n
40 aling ability relies solely on interterminal base pairing and is an independent cis-acting signaling
42 varied tendencies of modifications to alter base pairing and their interactions with DNA repair enzy
43 nt EVEs reached sizes greater than 1 million base pairs and contained as many as around 10% of the to
45 ency for incorporation of various mismatched base pairs and have uncovered a mechanism in which the r
46 unwinding by stabilizing the unpaired first base-pair and engaging the second base-pair poised for b
47 ock multiple functional DNAs through DNA-RNA base pairing, and the resulting RNA/DNA hybrids self-ass
48 truction of homo purine DNA, silver-mediated base pairs, and expansion of the four letter genetic cod
49 tured RNAs are folded into Watson-Crick (WC) base pairs, and sequence changes that preserve these pai
51 These sRNAs recognize transcripts through base-pairing, and sRNA-mRNA annealing consequently alter
52 tches where guanines and/or cytosines are 30 base pairs apart and the intervening sequence harbors se
54 air hydrogen bonds, in which both bases of a base pair are involved in forming hydrogen bonds with am
55 It has long been assumed that RNA or DNA base pairs are broken by the concerted symmetric movemen
58 lts demonstrate that an aptamer in which the base pairs are preformed also experiences a reduction in
59 l sequencing technologies (1 in 100 or 1,000 base pairs) are several orders of magnitude higher than
60 ption of a spatially broad inosine-adenosine base pair at the wobble position of the codon cannot be
61 ow that native transcripts are recognized by base pairing at positions -2 to -5 of the PFS and by a g
62 btle changes in all 12 possible noncanonical base pairs at the 3'-end of the nicked repair intermedia
63 pairs before internship to 6321.5 +/- 630.6 base pairs at the end of internship (t(246) = 2.69; p =
65 p year, from mean +/- SD of 6465.1 +/- 876.8 base pairs before internship to 6321.5 +/- 630.6 base pa
66 mer of dimers of PC4, which is stabilized by base pairing between homologous regions of the ASOs boun
67 e-telomerase scanning interactions, and then base pairing between hTR and telomere ssDNA promotes lon
70 efficiency of translation repression is the base pairing between the 'seed' region of the miRNA and
71 d kissing-loop motif, involving Watson-Crick base pairing between the single-stranded regions of a bu
74 nerated diverse mutations encompassing a 643-base pair (bp) deletion (100% efficiency), a stop codon
77 ISPR-Cas9 to insert sequences of up to 2,049 base pairs (bp), including enhancers and promoters, into
79 ically important, highly variable, 5 million base-pair (bp) region where diploid assembly is particul
80 As greater than or equal to approximately 60 base-pairs (bp) are required for DvSSJ1 insecticidal act
82 tions, contributing to more insight into how base pairs can bind when a proton is removed and highlig
83 o meta-DNAs that contain complementary 'meta-base pairs' can form double helices with programmed hand
85 TL analysis, as well as those predicted from base-pair changes in intergenic enhancer sites, coding-r
86 ow that it is possible to connect individual base-pair changes to the overall selection response.
88 ly gives rise to a methylation spacing of 14 base pairs, consistent with the previous structural obse
89 n-silico pipeline to predict regions of high base pair content across long genomes and to pinpoint ho
90 ct alignment methods that capture nested RNA base-pairing correlations (stochastic context-free gramm
91 tion [c.1265G>T/p.(Gly422Val)], and a 62,138-base pair deletion (NG_017034.2: g.35441_97578del62138)
92 the rr strain is profoundly linked with a 16-base pair deletion in the proximal promoter and inabilit
95 -methylated m42C also results in the loss of base pairing discrimination between C:G and other mismat
97 the intrinsic cyclizabilities of 270,806 50-base-pair DNA fragments that span Saccharomyces cerevisi
98 to reveal solution conditions in which an 18-base-pair DNA oligomer indeed remains bound to yNhp6A wh
103 tructure of a D1D2 core in complex with a 23-base pair dsRNA at pre-unwound state, revealing that two
104 an transition between parallel-stranded homo-base paired duplex and antiparallel unimolecular hairpin
106 ular analysis revealed a novel homozygous 22 base pair duplication (c.55_76dup) in the coding exon 1
107 g(2+)-reinforced DNA binding to validate DNA base pairing during the adenylyl transfer and nick-seali
110 an R-loop includes four terms-junctional and base-pairing energies and energies associated with super
112 ing, achieved at the energetic cost of a G-C base pair, explains how a single 5'-guanosine modifies t
113 d that a nonfunctional target site unable to base-pair extensively with the miRNA seed sequence can r
114 ansition pathway between Watson-Crick and HG base pairs for both naked B-DNA and A-RNA duplexes.
116 ased on minimal constitutive promoters (~120 base pairs), for which rules are developed to insert ope
119 n (T4706M) engineered into 1 allele and a 16 base pair frameshift deletion engineered into the second
121 ranscription factor 3 (ATF3) at -258 to -250 base pairs from the HSF1 transcriptional start site, and
122 ibility to undergo self-organization through base pairing has been conceptualized and accomplished.
123 RNA positions, we show that integrity of the base pair helps to modulate the ribosomal response to re
125 ovalent interactions, including Watson-Crick base pairing, Hoogsteen H-bonding, and pai-pai stacking,
126 nophosphate (AMP) during incorporation, this base pair hydrogen bonding is not sufficient to hold an
128 introducing G38A in hmtRNAIle or the A28:U42 base pair in a chimeric tRNA containing the anticodon st
129 ation of RNA duplexes with an internal Psi-A base pair in different nearest-neighbor sequence context
130 the anticodon sequence is correlated with a base pair in the anticodon loop (nucleotides 32 and 38)
131 witch-based on the rearrangement of a single base pair in the miRNA-mRNA duplex-that elongates a weak
134 epeats that had motifs with a length of 2-20 base pairs in 17,231 genomes of families containing indi
136 re used to covalently cross-link interstrand base pairs in DNA bonds that, in part, define colloidal
138 paired adenines in a bulge, Watson-Crick A-T base pairs in dsDNA only conferred ~130-fold protection
139 sequences for DNA engineering up to 11 kilo base pairs in length and with up to 80 base pair termina
142 and parts of stem 3 are formed and that the base pairs in stem 1 become structured or more rigid upo
143 encing error rates and a large proportion of base pairs in these long reads is incorrectly identified
144 method for characterizing A(syn)-T Hoogsteen base pairs in vitro and also lays the foundation for a s
145 their spliced counterparts, suggesting that base-pairing in the exonic segments upstream of retained
147 ion (FIT) of the dye between oligonucleotide base pairs, increasing its fluorescence by up to 20-fold
149 ension, and we identify a previously unknown base-pairing interaction between the 5' end and the 3' e
150 tions in U3 that destabilize the U3/pre-rRNA base-pair interactions or reduce the length of their lin
153 ormation of complex and intricate long-range base-pairing interactions which make the direct detectio
158 nding our calculation to A-RNA, for which HG base pairing is not observed experimentally, resulted in
161 e level of individual nucleic acid bases and base pairs is important for elucidating molecular proces
165 icity and predictability of the Watson-Crick base pairing make DNA an excellent building material for
166 densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fr
167 006 Cas12a (LbCas12a) at non-pathogenic 4-36-base-pair microduplications within the genome indicates
172 architectures through specific Watson-Crick base-pairing, molecular plasticity, and intermolecular c
173 l ion for cleavage and that the central four base pairs need to be stretched between the two catalyti
178 e excision leads to the disruption of wobble base pairing of SsrA due to site-specific recombination,
179 form of linear B-form double-helix with the base pairs of adenine (A) and thymine (T) or cytosine (C
180 g conformers bind and unwind several hundred base pairs of duplex DNA at an average rate of ~240 bp/m
181 StXPB and Bax1 together spirally encircle 10 base pairs of duplex DNA at the double-/single-stranded
188 t presence of an alternative, Hoogsteen (HG) base pairing pattern in naked DNA duplexes, and estimate
189 demonstrated that m4C retains a regular C:G base pairing pattern in RNA duplex and has a relatively
190 n average mutation rate of 0.58 x 10(-8) per base pair per generation (at an average parental age of
192 n an estimate of 1.29 x 10(-8) mutations per base pair per meiosis with a 95% confidence interval of
195 a robust helicase capable of rapidly (~70-80 base pairs per second) unwinding extensive tracts (~8-10
199 en for candidate structured regions based on base pairing potential and provides a readily interpreta
200 interactions identified by CLASH have strong base-pairing potential and are highly enriched for compl
201 the reproducibility of the interaction, not base-pairing potential, is a stronger predictor for a re
202 res of salts of free anionic nucleobases and base pairs previously studied only computationally and i
205 n, to approximate the partition function and base-pairing probabilities, which is shown to be orders
207 pool of nucleotides with various sugars and base pairing properties, which is critically important f
208 rchers have begun to exploit the predictable base-pairing properties of RNA and DNA in order to utili
213 ent in mammals and can be captured at single base pair resolution by whole genome bisulfite sequencin
214 r assays with mass spectrometry to produce a base pair resolution dissection of more than a E. coli p
216 an simultaneously monitor DNA unwinding with base-pair resolution and binding of fluorescently labele
217 and position of individual D-loops with near base-pair resolution and deep coverage, while also revea
219 ntified putative causal variants with double base-pair resolution at 24 of these loci, and between th
220 and translatome during lytic infection with base-pair resolution by computational integration of mul
225 idues predicted to recognize the central C:G base pair resulted in an altered enzyme that recognizes
226 r system, mutagenesis to disrupt and restore base pairing revealed that the MTE interacts with the 5'
232 flanked by a short ( 70 nucleotide), highly base-paired segment upstream and a predominantly single-
234 donuclease, recognizes and cleaves the seven base pair sequence 5'-CCTCAGC-3', generating 3-base, 5'-
235 er, existing genome-wide methods lack either base pair sequence resolution or direct spatial localiza
237 tidine is a molecular mechanism to fine tune base pairing specificity and affect the coding efficienc
240 tructures of RNA molecules using consecutive base-pairs (stacks) as anchors and generates an optimal
241 modulate conformational fluctuations at each base-pair step, which accumulate to impact RNA tertiary
242 res a precisely positioned pyrimidine-purine base-pair step, whose location has been shown to modulat
245 e, involved in lignin biosynthesis, showed a base-pair substitution that is associated with decreased
246 24 with cysteine in TGFBI via ssODN-mediated base-pair substitution using CRISPR/Cas9 technology.
248 read quadruplet codons, use non-natural DNA base pairs, synthesize completely recoded genomes and cr
251 exist in dynamic equilibrium with Hoogsteen base pairs that expose the Watson-Crick faces of purine
252 dreds of unique DNA strands and thousands of base pairs, thus in principle providing many degrees of
253 e-cell technique that harnesses nucleic acid base pairing to detect the abundance and positioning of
254 2 to the transcriptionally active TE loci by base pairing to nascent transcripts, however the downstr
255 We find that NarS acts by Hfq-dependent base pairing to repress the synthesis of the nitrite tra
256 ety of deletions, ranging from a few hundred base pairs to 100 kilobases, are created upstream of the
257 the MTE lacks the pyrimidine-rich tract that base pairs to a G-rich bulge to form the pseudoknot.
258 f DNA mutation (ranging in scale from single base pairs to multiple chromosomes), (c) developmental c
263 intrinsically to regulate gene expression by base-pairing to complementary mRNA targets while in asso
264 ation speed including mRNA structure, wobble base pairing, tripeptide motifs, positively charged upst
265 tic organism (SSO) that retains an unnatural base pair (UBP) in its DNA, transcribes it into mRNA and
267 o identify variants that replicate unnatural base pairs (UBPs), unnatural backbones, tags, or other e
268 on of artificial extra base pairs (unnatural base pairs, UBPs) are opening the door to a new research
269 ncements in the creation of artificial extra base pairs (unnatural base pairs, UBPs) are opening the
270 sequence, itself a short AT-tract, resides 5 base pairs upstream of otherwise cryptic -10 elements.
275 of a DNA duplex containing the unnatural P.Z base-pair when an imidazole unit is aligned with a P nuc
276 ures due to the primacy of a net increase in base pairing, whereas rebinding of 'recovery' strands is
277 cocrystal includes the anionic [Ad(-)(HThy)] base pair which is a stable formation in the solid state
279 rate the methodology with studies of the 153-base pair Widom DNA molecule that is simultaneously meth
280 lix and forms a trans Hoogsteen-Watson-Crick base pair with a uridine, thus becoming an integral part
283 erotonin (HTR2C) receptor via its ability to base pair with its pre-mRNA and regulate alternative RNA
286 ion of DNA polymerases by adopting Hoogsteen base pairing with adenine in a Watson-Crick-like geometr
289 ll nuclear RNA (snRNA) nucleotides that form base pairs with the branch site are initially sequestere
291 nction when an upstream adenosine is able to base-pair with a post-transcriptionally added uridine in
292 oreover, we show that circulating miRNAs can base-pair with a target mimic in a seed-based manner, an
293 ppABCDF and carAB operons, respectively, and base-pair with their own transcripts to inhibit translat
296 grammability based on canonical Watson-Crick base pairing, with crystal assembly in all three dimensi
297 be used to detect the formation of a metallo-base pair within a duplexed strand and is therefore attr
300 hanges in genome sequence, as small as a few base pairs, within segments of genome called simple sequ
301 NN predictions for Watson-Crick and modified base pairs yielded an overall RMSD of 0.32 kcal/mol when