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1 ns in the PDE3A active site abolish compound binding.
2 ely small conformational changes upon target binding.
3 mediate the efficiency of reovirus host cell binding.
4 al understanding of membrane-mediated ligand binding.
5 sition states and favors the enthalpy-driven binding.
6 hus explaining why H2 is necessary for tight binding.
7 insertions that are not correlated with H-NS binding.
8 showed weakening of actin-mutant tropomyosin binding.
9 e to MEK inhibition by enhancing interfacial binding.
10 ngs, along with histological analyses of IAV binding.
11 in BBSome conformation induced by ARL6(GTP) binding.
12 he inclusion of an auxiliary site capable of binding a Lewis acid (LA(II)); we used this unique featu
15 ize immature Zika virus via an antibody that binds across the E and prM proteins, resulting in a subn
18 ding region for EphA2, we compared the EphA2 binding activity of EBV gH/gL and the EBV gH/gL-N(69)L/S
19 We demonstrate a strategy to improve the binding affinity of aptamers by modifying their sequence
21 tween disorder in H2 and its contribution to binding affinity, and that sequence variations in H2 tha
22 the wild type allele by measuring its ligand binding affinity, CCL2 scavenging efficiency, and cell a
23 cterization, we present simple peptides that bind alpha-cobratoxin (alpha-Cbtx) and prevent its inhib
27 ninflammatory because of reduced FcepsilonRI binding and enhanced CD23-dependent serum clearance.
28 couple the energy of nucleoside triphosphate binding and hydrolysis to mechanical movement along a po
30 olutionarily more recent site diminishes p38 binding and made the phosphoswitch differently sensitive
31 to minimize the percentage of A9 unspecific binding and to increase the binding affinity to the rece
32 creased histone acetylation, increased c-Jun binding, and upregulation of nearby genes implicated in
37 rve separable effects of Na(+) and succinate binding at several positions suggesting distinct effects
38 results suggest that interfering with ZNF274 binding at the maternal SNORD116 locus is a potential th
43 ABM300 was characterized in vitro (receptor binding, beta-arrestin2 recruitment, ERK1/2 phosphorylat
44 esigned two cyclic peptide mimics of the TAR-binding beta2-beta3 loop sequences present in two high-a
45 IP) and biochemical analyses revealed direct binding between endogenous TruB1 and the stem-loop struc
49 ved through a hydrophobic trimethyl-L-lysine-binding 'cage' formed by BAHCC1(BAH), mediating colocali
52 es, peroxisomal acyl-activating enzymes, ATP binding cassette (ABC) transporters, and central carbon
53 gest how changes in the association of lipid-binding caveolar proteins upon flattening of caveolae co
57 ns, we demonstrate that cbEGF domain calcium binding decreases under mechanical stress (i.e. cbEGF do
58 w helical propensity and establishes that H2 binds directly to the coiled-coil 1B (CC1B) domain of p1
60 an extended loop in the C-terminal receptor-binding domain (HC) of BoNT/B (HC/B) has been proposed t
62 gM, and IgA antibodies to the spike receptor binding domain (RBD), S1+S2, nucleocapsid, and ORF6 to O
63 re, we report a crystal structure of the DNA-binding domain of a model ASO-binding protein PC4, in co
65 n July, 2020, using a spike protein receptor binding domain total antibody chemiluminescence assay (1
68 -binding surface exhibiting a preference for binding double-strand RNA (dsRNA) over single-strand RNA
70 Newer formulations with carbohydrate cores binding elemental iron more tightly allow complete iron
71 te expressions for the prediction of optimal binding energies of important surface intermediates and
72 r the loss or overexpression of the membrane-bound ephrin-B1 in astrocytes during postnatal day (P) 1
74 nes) and antioxidant capacity, especially in bound extracts (1.3 g GAE.100 g(-1); 0.6 g catechin eq.1
75 ntaining polyglutamine tracts including core-binding factor alpha1, mediator subunit 12, transcriptio
76 e compared to that observed when organically bound Fe dominates with this effect because of the stron
77 rol S assay indicated that these metabolites bind ferric iron, which suppresses their production when
78 RA method is able to detect small changes in binding free energy with a sensitivity comparable to in
81 inhibitors bearing two pharmacophores-a zinc binding group and a Cys-reactive warhead-were designed t
82 ly by facilitating the linking between PRDM9-bound hotspots and the nascent chromosome axis through i
83 nists and heteromeric receptors that contain binding-impaired subunits, as we show for both kainate a
84 ultiple regulatory factors that specifically bind in an allele-imbalanced manner to the fSNPs on the
85 s show how the donor and acceptor substrates bind in the active site and how ethambutol inhibits arab
88 catechin gallate (ECGC) exhibited very rapid binding (in the order of seconds) with Human Salivary al
92 ing regions of myosin assures a proper actin-binding interface and active site have formed before pro
93 dditional hIL-23p19 substitutions within its binding interface to hIL-23R and found that the combined
95 ases, our work demonstrates that drug-target binding is a major predictor of bacterial responses to a
97 concentration-dependent manner and that the binding is facilitated by the presence of phosphatidylse
99 g a protein binding motif will alter protein binding, it has been shown that single nucleotide polymo
100 C) and epigallocatechin (EGC) exhibited slow binding kinetics (in the order of minutes), epicatechin
102 d mutations that diminish PCSK9's ability to bind LDL reported here supports the notion that PCSK9-LD
107 Cryo-electron tomography of liposomes with bound MACA showed an amorphous protein layer on the memb
109 exhibit irreversible or reversibly covalent binding mechanisms towards cysteine thiols and other ami
110 that the fluorescence properties of amyloid-bound MHB can be correlated to the change of binding sit
111 c the CXCR4-binding site to MIF, selectively bind MIF with nanomolar affinity and block MIF/CXCR4 wit
113 iting in vitro, suggesting that PPR65 cannot bind modified bases due to differences in the structure
114 While it is clear that changing a protein binding motif will alter protein binding, it has been sh
115 TAC") does so by rediscovering ab initio the binding motifs for known regulators and some unknown one
116 affect RNA-protein interactions from outside binding motifs through altered RNA secondary structure.
120 out evidence of donor and acceptor substrate binding obtained using a crystal engineering approach.
121 s by the KDEL receptor is pH dependent, with binding occurring under acidic conditions in the Golgi a
122 the agonist, ATR, as well as the noncovalent binding of beta-ionone, an antagonist for G protein acti
130 singly charged metals differ profoundly from binding of multiply charged ions, often leading to overa
133 iochemical, and biologic work has shown that binding of PIP(3) to the pleckstrin homology (PH) domain
134 ke only protein sequence as input to predict binding of protein to DNA, RNA, and other proteins.
137 tion of the T cell receptor (TCR) results in binding of the adapter protein Nck (noncatalytic region
138 iosensors can be used to monitor equilibrium binding of the agonist, ATR, as well as the noncovalent
139 ctures in complex with HIV-1 RT/dsDNA showed binding of the conjugates at the polymerase active site,
140 by their typically low affinity and variable binding of the SIMs in parallel and antiparallel orienta
141 ERV into an A-repeat deficient Xist rescues binding of Xist RNA to Spen and results in strictly loca
142 , with non-inferiority declared if the lower bound of the 95% confidence interval was greater than -1
144 e self-organisation and dynamics of membrane-bound organelles such as the Golgi apparatus, remain elu
145 n protein-protein interactions to favor Cas2 binding over tetramerization; this in turn led to prefer
148 This spurs interest in simulations of (un)binding pathways of TSPO ligands, which could reveal the
149 ay-based platform yields high-quality MHC-II-binding peptide datasets that can be used to improve the
152 ealed a large, membrane-accessible substrate-binding pocket that alternately faced the ER lumen and c
154 polymerized microtubule ends, to which KIF5B binds poorly, likely because its cofactors, MAP7-family
155 an be used to improve the accuracy of MHC-II binding prediction algorithms, and potentially enhance o
159 ently suggests that the knowledge of the DNA-binding properties of the proteins is in itself not suff
160 e transcription factor cAMP response element-binding protein (CREB) to enhance the expression of prot
162 rotein (GFP), siderocalin (Scn), and retinol-binding protein 4 (RBP4) as model proteins and screened
164 tent with adipogenesis, and the phospholipid-binding protein annexin A3 (AnxA3), a negative regulator
165 ogin (SCGN) is a recently discovered calcium-binding protein belonging to the group of EF-hand calciu
166 show that the phosphorylation of the RNA-DNA binding protein fused in sarcoma (FUS) is higher in Itga
168 ure of the DNA-binding domain of a model ASO-binding protein PC4, in complex with a full PS 2'-OMe DN
170 t the promoter, recruits the C/EBPbeta (CREB-binding protein) and CBP transcription factors and activ
171 excitement around ProQ as a novel global RNA-binding protein, and its potential to serve as a matchma
172 ned to the filament domain containing myosin binding protein-C, the "C-zone." Myosin motors in domain
174 nce has indicated that circRNAs can directly bind proteins and participate in a myriad of different b
175 rands and crosslink them: class A penicillin-binding proteins (aPBPs) and complexes of SEDS proteins
176 he endoplasmic reticulum (ER) immunoglobulin binding proteins (BiPs) are molecular chaperones involve
177 ition for binding sites among protective RNA-binding proteins and decay factors, PTBP1 promotes displ
179 for calcium management (calmodulin, calcium-binding proteins), pH regulation (V-type proton ATPase),
180 Here we have developed monobodies, synthetic binding proteins, that bind the N-terminal four-helix bu
187 e whether this glycosylation site may be the binding region for EphA2, we compared the EphA2 binding
188 ormed, using CRISPR-Cas9 to delete MafK-int6 binding region in IRF8 expression-restrictive cells.
190 ent at the central transcription factor (TF) binding regions and at the flanking eRNA initiation regi
191 mall changes outside of highly conserved DNA-binding regions can lead to profound changes in protein
192 munication between the actin- and nucleotide-binding regions of myosin assures a proper actin-binding
193 that increase the surface area of the actin-binding regions promoting myosin interaction with actin,
194 a-interface, mapped to Switch I and effector-binding regions, (ii) alpha-interface at the allosteric
198 n the microtubule-bound state by slowing ATP-binding, resulting in high-force production at both homo
199 rinted as a glycan microarray to examine the binding selectivities of several HS-binding proteins.
203 nal repression of Wapl through a single Pax5-binding site by recruiting the polycomb repressive compl
207 hylated context, either deletion of the CTCF binding site or depletion of RAD21 cohesin complex prote
209 bound MHB can be correlated to the change of binding site polarity and that a tyrosine to phenylalani
210 tides ('msR4Ms') designed to mimic the CXCR4-binding site to MIF, selectively bind MIF with nanomolar
213 e MITF as a model, we show that low-affinity binding sites act as a competitive reservoir in vivo fro
214 zation that depend on direct competition for binding sites among protective RNA-binding proteins and
216 lycomb repressive complex occupancy and CTCF binding sites are associated with cancer-specific gene d
217 nalysis of the data allowed pinpointing CodY-binding sites at close to single-nucleotide resolution.
218 ally identify ZMAT3-regulated RNAs and their binding sites at nucleotide resolution in intact colorec
220 during infection without the need to evolve binding sites for antisilencing proteins at each foreign
221 reporter assay (MPRA) libraries composed of binding sites for SOX2, POU5F1 (OCT4), KLF4, and ESRRB.
223 of both the allosteric ligands and receptor binding sites important for these allosteric activities.
224 PSF30-hFip1 complex in vitro, and both hFip1 binding sites in CPSF30 can support polyadenylation.
225 ed in this way often contain multiple ligand binding sites or modification sites, which can operate t
227 8 forms a dimeric structure with four Zn(2+) binding sites within each subunit: a highly conserved pr
231 OTAIR-sbid impaired the ability of HOTAIR to bind Snail and, in turn, trigger H3K27me3/EZH2-mediated
232 ides were printed as a microarray to examine binding specificities of lectins, anti-ganglioside antib
233 s stabilize motor domains in the microtubule-bound state by slowing ATP-binding, resulting in high-fo
236 ffold with basic patches constituting an RNA-binding surface exhibiting a preference for binding doub
237 ious DNA motifs are mediated by its flat DNA-binding surface, which is centered on a short loop spann
238 nding to the same consensus motif, their DNA-binding syntax is different, suggesting discriminatory f
240 monobodies, synthetic binding proteins, that bind the N-terminal four-helix bundle (4HB) "killer" dom
241 anized VHH phage libraries that specifically bind the S1 SARS-CoV-2 spike protein, and block the inte
242 and HPV-31 Y102E are similar in that neither binds the C terminus of Brd4, but in all other aspects t
244 uclear receptors (NRs), NR2F2 and NR2C2, can bind to (TCAGGG)(n) variant repeats within telomeres and
246 f p44/p62 complexes without XPD reveals they bind to and randomly diffuse on DNA, however, in the pre
247 well-established that transcription factors bind to specific DNA sequences using a combination of ba
248 structure reveals that two Rab33B molecules bind to the diverging alpha-helices of the dimeric Atg16
249 ation during reductive ER stress but did not bind to this protein during nonreductive ER stress.
251 , multivalent interactions couple productive binding to efficient deacetylation of histones on endoge
254 as been proposed to also contribute to toxin binding to neurons by interacting with lipid membranes (
257 enza IgG monoclonal antibodies for selective binding to the activating Fcgamma receptor FcgammaRIIa r
259 otes immunostimulatory secondary necrosis by binding to the phagocytic marker phosphatidylserine on d
261 thambutol inhibits arabinosyltransferases by binding to the same site as both substrates in EmbB and
263 ulin); 5) is competitive with paclitaxel for binding to tubulin but not with vinblastine, crocin, or
264 and pro-metastatic effects through directly binding to Vimentin and competitively abrogating Trim16-
268 osomes revealed that the Aster-B GRAM domain binds to membranes in a cholesterol concentration-depend
269 , and WDR41 is a beta-propeller protein that binds to SMCR8 such that the whole structure resembles a
270 ion is controlled by the MatP protein, which binds to specific sites (matS) within ter, and interacts
272 HDL NPs are a cholesterol-poor ligand that binds to the receptor for cholesterol-rich HDLs, scaveng
274 s even after the removal of the compound; 3) binds to tubulin [dissociation constant (K(d)) 0.4 +/- 0
277 was able to detect C. albicans cells, and it bound to Adh1 in yeast and Adh2 in hyphae among the cell
278 ASL(Arg1)(ICG) and ASL(Arg2)(ICG) constructs bound to cognate and wobble codons on the ribosome revea
280 Crm proteins from different orthopoxviruses bound to membrane-associated TNF and dampened inflammato
281 different miRNAs or when the two sites were bound to miRNAs loaded into two different AGO paralogs,
282 ing reactivator, monoxime RS194B, reversibly bound to native and venomous agent X (VX)-inhibited huma
284 is constitutively present in healthy tissues bound to resident cells via its high-affinity receptor,
285 frared light sensitivity using gold nanorods bound to temperature-sensitive engineered transient rece
286 f pore formation for the CDC intermedilysin, bound to the human immune receptor CD59 in a nanodisc mo
287 ed by the nuclear receptor NR4A1/Sp1 complex bound to the proximal germinal center (GC)-rich region o
289 corporation, and additionally, we show that, bound to UvrC, the [4Fe4S] cofactor is susceptible to ox
290 experiments, and inhibition analysis of GD3-binding toward Siglec-7 using synthetic sialoglycoconjug
296 latory constraints to which this industry is bound will be outlined in brief, as well as an introduct
298 moniae is a dimeric protein that potentially binds with single-stranded DNA (ssDNA) in a manner simil
299 nform ongoing controversy about where XPA is bound within the NER bubble, provide structural insights
300 inst non-specific, adventitious nanoparticle binding, without the need for complex surface chemistrie