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1 al understanding of membrane-mediated ligand binding.
2 sition states and favors the enthalpy-driven binding.
3 hus explaining why H2 is necessary for tight binding.
4 insertions that are not correlated with H-NS binding.
5 showed weakening of actin-mutant tropomyosin binding.
6 e to MEK inhibition by enhancing interfacial binding.
7 ng conformational rearrangement upon initial binding.
8 s to identify residues involved in substrate binding.
9 ange in the DeltaH associated with substrate binding.
10 ngs, along with histological analyses of IAV binding.
11 ns in the PDE3A active site abolish compound binding.
12 in BBSome conformation induced by ARL6(GTP) binding.
13 ely small conformational changes upon target binding.
14 mediate the efficiency of reovirus host cell binding.
15 he inclusion of an auxiliary site capable of binding a Lewis acid (LA(II)); we used this unique featu
16 report that, in mammalian cells, NF2's lipid-binding ability is critical for its function in activati
19 ding region for EphA2, we compared the EphA2 binding activity of EBV gH/gL and the EBV gH/gL-N(69)L/S
20 st in Ca(2+)-release assays; its potency and binding affinity for Ins(1,4,5)P(3)R were similar to tho
22 We demonstrate a strategy to improve the binding affinity of aptamers by modifying their sequence
23 left region, (Sc)CRM1 exhibits 16-fold lower binding affinity than (Hs)CRM1 toward PKI-NES and signif
25 tween disorder in H2 and its contribution to binding affinity, and that sequence variations in H2 tha
26 the wild type allele by measuring its ligand binding affinity, CCL2 scavenging efficiency, and cell a
29 ninflammatory because of reduced FcepsilonRI binding and enhanced CD23-dependent serum clearance.
30 couple the energy of nucleoside triphosphate binding and hydrolysis to mechanical movement along a po
33 olutionarily more recent site diminishes p38 binding and made the phosphoswitch differently sensitive
35 to minimize the percentage of A9 unspecific binding and to increase the binding affinity to the rece
36 creased histone acetylation, increased c-Jun binding, and upregulation of nearby genes implicated in
41 rve separable effects of Na(+) and succinate binding at several positions suggesting distinct effects
42 results suggest that interfering with ZNF274 binding at the maternal SNORD116 locus is a potential th
44 ABM300 was characterized in vitro (receptor binding, beta-arrestin2 recruitment, ERK1/2 phosphorylat
45 esigned two cyclic peptide mimics of the TAR-binding beta2-beta3 loop sequences present in two high-a
46 IP) and biochemical analyses revealed direct binding between endogenous TruB1 and the stem-loop struc
48 did not affect surface expression and ligand binding but changed the susceptibility to heat denaturat
50 trate pTyr in EGFR and HER2 mediate specific binding by the SHP2 active site, leading to blockade of
51 ved through a hydrophobic trimethyl-L-lysine-binding 'cage' formed by BAHCC1(BAH), mediating colocali
55 es, peroxisomal acyl-activating enzymes, ATP binding cassette (ABC) transporters, and central carbon
56 etion was not a consequence of increased ATP-binding cassette subfamily G member 5/8 activity given t
57 establishes multivalent, synergistic H3-tail binding causing distinct cellular localization and enhan
58 gest how changes in the association of lipid-binding caveolar proteins upon flattening of caveolae co
60 rvation and structural similarity in the NES-binding cleft region, (Sc)CRM1 exhibits 16-fold lower bi
63 ns, we demonstrate that cbEGF domain calcium binding decreases under mechanical stress (i.e. cbEGF do
64 le measurements of full length p53 tetramers binding DNA reveal the parameters that define the stabil
65 an extended loop in the C-terminal receptor-binding domain (HC) of BoNT/B (HC/B) has been proposed t
67 gM, and IgA antibodies to the spike receptor binding domain (RBD), S1+S2, nucleocapsid, and ORF6 to O
68 However, STEAP1 lacks an intracellular NADPH-binding domain and does not exhibit cellular ferric redu
69 Cys2His2 zinc finger is the most common DNA-binding domain expanding in metazoans since the fungi hu
70 reatment of COVID-19 with high anti-receptor binding domain IgG titer convalescent plasma is efficaci
71 re, we report a crystal structure of the DNA-binding domain of a model ASO-binding protein PC4, in co
73 se (NOX2) subunit, p67(phox), and to the RAC-binding domain of p21-activated kinase, consistent with
74 n July, 2020, using a spike protein receptor binding domain total antibody chemiluminescence assay (1
77 -binding surface exhibiting a preference for binding double-strand RNA (dsRNA) over single-strand RNA
79 Newer formulations with carbohydrate cores binding elemental iron more tightly allow complete iron
80 -membrane interaction and fully map the site-binding energetics of Syt1 both in the absence and prese
81 te expressions for the prediction of optimal binding energies of important surface intermediates and
82 bstrate selectivity of ADAM17 toward Heparin-binding epidermal growth factor like growth factor (HB-E
84 ntaining polyglutamine tracts including core-binding factor alpha1, mediator subunit 12, transcriptio
86 s, and experiments show that protein-protein binding free energies are sensitive to the extent of met
88 RA method is able to detect small changes in binding free energy with a sensitivity comparable to in
90 inhibitors bearing two pharmacophores-a zinc binding group and a Cys-reactive warhead-were designed t
91 nists and heteromeric receptors that contain binding-impaired subunits, as we show for both kainate a
94 catechin gallate (ECGC) exhibited very rapid binding (in the order of seconds) with Human Salivary al
98 ing regions of myosin assures a proper actin-binding interface and active site have formed before pro
99 dditional hIL-23p19 substitutions within its binding interface to hIL-23R and found that the combined
100 ases, our work demonstrates that drug-target binding is a major predictor of bacterial responses to a
102 rmational selection mechanism, in which POT1 binding is coupled to an obligatory unfolding reaction,
104 concentration-dependent manner and that the binding is facilitated by the presence of phosphatidylse
106 g a protein binding motif will alter protein binding, it has been shown that single nucleotide polymo
107 C) and epigallocatechin (EGC) exhibited slow binding kinetics (in the order of minutes), epicatechin
111 exhibit irreversible or reversibly covalent binding mechanisms towards cysteine thiols and other ami
114 nel and systematically validated our menthol binding models with thermodynamic mutant cycle analysis.
115 o weak - or are disfavored compared to other binding modes - to be observed in typical host-guest com
117 While it is clear that changing a protein binding motif will alter protein binding, it has been sh
119 TAC") does so by rediscovering ab initio the binding motifs for known regulators and some unknown one
120 affect RNA-protein interactions from outside binding motifs through altered RNA secondary structure.
121 out evidence of donor and acceptor substrate binding obtained using a crystal engineering approach.
122 s by the KDEL receptor is pH dependent, with binding occurring under acidic conditions in the Golgi a
125 the agonist, ATR, as well as the noncovalent binding of beta-ionone, an antagonist for G protein acti
131 SA (g-iELISA) is based on the principle that binding of monoclonal antibodies to specific epitopes of
134 singly charged metals differ profoundly from binding of multiply charged ions, often leading to overa
137 iochemical, and biologic work has shown that binding of PIP(3) to the pleckstrin homology (PH) domain
138 ke only protein sequence as input to predict binding of protein to DNA, RNA, and other proteins.
142 tion of the T cell receptor (TCR) results in binding of the adapter protein Nck (noncatalytic region
143 iosensors can be used to monitor equilibrium binding of the agonist, ATR, as well as the noncovalent
144 ctures in complex with HIV-1 RT/dsDNA showed binding of the conjugates at the polymerase active site,
145 by their typically low affinity and variable binding of the SIMs in parallel and antiparallel orienta
146 ERV into an A-repeat deficient Xist rescues binding of Xist RNA to Spen and results in strictly loca
147 The electrochemical measurements for glucose binding on the AuNP-MIP sensor revealed a high affinity
148 endoplasmic reticulum localization, kinesin-binding or phosphoinositide-binding properties abrogated
149 n protein-protein interactions to favor Cas2 binding over tetramerization; this in turn led to prefer
151 also show that SIM interacts with CYCA2;3, a binding partner of CDKB1;1, via SIM motif A, which we pr
152 ceptor kinase-1 (IRAK-1) as a Nck1-selective binding partner, demonstrating that IRAK-1 activation by
153 This spurs interest in simulations of (un)binding pathways of TSPO ligands, which could reveal the
155 e closely related species to assess how CTCF binding patterns stably fixed by evolution in each speci
156 ty in a panel of variants of the Car9 silica-binding peptide (DSARGFKKPGKR) fused to the C-terminus o
157 with rhIGF-1 (recombinant human IGF-1)/BP3 (binding peptide 3) improves lung growth and prevents PH
158 ay-based platform yields high-quality MHC-II-binding peptide datasets that can be used to improve the
159 suggests the existence of an optimal ligand-binding pocket conformation for capsaicin-mediated TRPV1
160 ealed a large, membrane-accessible substrate-binding pocket that alternately faced the ER lumen and c
162 an be used to improve the accuracy of MHC-II binding prediction algorithms, and potentially enhance o
167 ization, kinesin-binding or phosphoinositide-binding properties abrogated the regenerative effects.
169 ently suggests that the knowledge of the DNA-binding properties of the proteins is in itself not suff
170 e transcription factor cAMP response element-binding protein (CREB) to enhance the expression of prot
172 rotein (GFP), siderocalin (Scn), and retinol-binding protein 4 (RBP4) as model proteins and screened
174 tent with adipogenesis, and the phospholipid-binding protein annexin A3 (AnxA3), a negative regulator
175 ogin (SCGN) is a recently discovered calcium-binding protein belonging to the group of EF-hand calciu
176 lysaccharide monooxygenase (LPMO) and copper binding protein CopC share a similar mononuclear copper
177 show that the phosphorylation of the RNA-DNA binding protein fused in sarcoma (FUS) is higher in Itga
179 ure of the DNA-binding domain of a model ASO-binding protein PC4, in complex with a full PS 2'-OMe DN
180 Mental Retardation Protein (FMRP) is an RNA binding protein that regulates translation and is requir
182 t the promoter, recruits the C/EBPbeta (CREB-binding protein) and CBP transcription factors and activ
183 excitement around ProQ as a novel global RNA-binding protein, and its potential to serve as a matchma
184 ned to the filament domain containing myosin binding protein-C, the "C-zone." Myosin motors in domain
186 rands and crosslink them: class A penicillin-binding proteins (aPBPs) and complexes of SEDS proteins
187 he endoplasmic reticulum (ER) immunoglobulin binding proteins (BiPs) are molecular chaperones involve
188 ition for binding sites among protective RNA-binding proteins and decay factors, PTBP1 promotes displ
191 for calcium management (calmodulin, calcium-binding proteins), pH regulation (V-type proton ATPase),
192 organic matter, such as hydrophobic surface binding proteins, laccases (AA1_1), xylanases (GH10, GH1
193 f TRAMP components with multiple nuclear RNA binding proteins, revealing preferential colocalization
194 Here we have developed monobodies, synthetic binding proteins, that bind the N-terminal four-helix bu
199 ion by NMR spectroscopy, we identify the SAM-binding region and observe changes in the dynamics of th
200 e whether this glycosylation site may be the binding region for EphA2, we compared the EphA2 binding
201 ormed, using CRISPR-Cas9 to delete MafK-int6 binding region in IRF8 expression-restrictive cells.
203 ent at the central transcription factor (TF) binding regions and at the flanking eRNA initiation regi
204 mall changes outside of highly conserved DNA-binding regions can lead to profound changes in protein
205 munication between the actin- and nucleotide-binding regions of myosin assures a proper actin-binding
206 that increase the surface area of the actin-binding regions promoting myosin interaction with actin,
207 a-interface, mapped to Switch I and effector-binding regions, (ii) alpha-interface at the allosteric
213 n the microtubule-bound state by slowing ATP-binding, resulting in high-force production at both homo
215 rinted as a glycan microarray to examine the binding selectivities of several HS-binding proteins.
216 hanism of the Ealpha and its downstream CTCF binding site (here named EACBE) in dynamic chromatin reg
220 nal repression of Wapl through a single Pax5-binding site by recruiting the polycomb repressive compl
223 ering such a selective multivalent metal ion binding site into target macromolecules for structural a
225 hylated context, either deletion of the CTCF binding site or depletion of RAD21 cohesin complex prote
227 bound MHB can be correlated to the change of binding site polarity and that a tyrosine to phenylalani
228 tides ('msR4Ms') designed to mimic the CXCR4-binding site to MIF, selectively bind MIF with nanomolar
233 e MITF as a model, we show that low-affinity binding sites act as a competitive reservoir in vivo fro
234 zation that depend on direct competition for binding sites among protective RNA-binding proteins and
236 lycomb repressive complex occupancy and CTCF binding sites are associated with cancer-specific gene d
237 nalysis of the data allowed pinpointing CodY-binding sites at close to single-nucleotide resolution.
238 ally identify ZMAT3-regulated RNAs and their binding sites at nucleotide resolution in intact colorec
241 during infection without the need to evolve binding sites for antisilencing proteins at each foreign
242 reporter assay (MPRA) libraries composed of binding sites for SOX2, POU5F1 (OCT4), KLF4, and ESRRB.
244 of both the allosteric ligands and receptor binding sites important for these allosteric activities.
245 PSF30-hFip1 complex in vitro, and both hFip1 binding sites in CPSF30 can support polyadenylation.
246 e searches resulted in only 13 similar metal binding sites in other proteins, indicative of the raren
248 ed in this way often contain multiple ligand binding sites or modification sites, which can operate t
249 t for smaller oligonucleotides the number of binding sites remained unchanged with pressure rise whil
251 8 forms a dimeric structure with four Zn(2+) binding sites within each subunit: a highly conserved pr
256 ides were printed as a microarray to examine binding specificities of lectins, anti-ganglioside antib
258 ffold with basic patches constituting an RNA-binding surface exhibiting a preference for binding doub
259 ious DNA motifs are mediated by its flat DNA-binding surface, which is centered on a short loop spann
260 nding to the same consensus motif, their DNA-binding syntax is different, suggesting discriminatory f
264 sites enabled chemoselective and reversible binding to acetylene through the formation of metastable
266 which functions as a stabilizer of MEILB2 by binding to an alpha-helical N-terminus of MEILB2 and pre
267 ) changes significantly, consistent with BVM binding to an internal ring of hydrophobic side chains o
270 , multivalent interactions couple productive binding to efficient deacetylation of histones on endoge
272 dium containing eGFP-Wnt-3a to visualize its binding to FZD and to quantify Wnt-FZD interactions in r
276 as been proposed to also contribute to toxin binding to neurons by interacting with lipid membranes (
278 rved for estradiol but not testosterone, IPI binding to SHBG was reduced by ~20-fold in the presence
280 enza IgG monoclonal antibodies for selective binding to the activating Fcgamma receptor FcgammaRIIa r
282 otes immunostimulatory secondary necrosis by binding to the phagocytic marker phosphatidylserine on d
284 thambutol inhibits arabinosyltransferases by binding to the same site as both substrates in EmbB and
286 s, which bind NC with exothermic energetics, binding to these sites occurs endothermically due to con
288 ulin); 5) is competitive with paclitaxel for binding to tubulin but not with vinblastine, crocin, or
289 and pro-metastatic effects through directly binding to Vimentin and competitively abrogating Trim16-
292 experiments, and inhibition analysis of GD3-binding toward Siglec-7 using synthetic sialoglycoconjug
300 inst non-specific, adventitious nanoparticle binding, without the need for complex surface chemistrie