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2 The delivery of large DNA vectors (>100 000 bp) remains a limiting step in the engineering of mammal
4 ppeared from the fossil record around 40,000 bp, after a demographic history of small and isolated gr
5 ite of El Sidron, Spain, dated around 49,000 bp, constituted a closely related kin group, making thes
6 requency-division multiplexed (0.5 m x 1,000 bps) prototype are demonstrated as proof-of-principle ex
8 sequences from California (mt-CApsy, 15,027 bp) and Florida (mt-FLpsy, 15,012 bp), USA, were acquire
9 s) had genome lengths of 178,262 bp, 171,045 bp, and 171,454 bp, respectively, and were phylogenetica
12 amples, with 94% of deletions larger than 10 bp, and essentially no insertions at all tested target s
13 fragment containing the five motifs (the 10-bp, 10-bp-like, 10-bp-related, Region 2 and Fifth motifs
14 islands are quite short ( approximately 100 bp), are enriched near active genes, and often occur at
15 interactions at a high resolution (e.g. 100 bp), we developed a computational method that integrates
17 lization: large deletions (median size, ~100 bp) with little or no homology at deletion junctions.
19 mplify fragments (horse; 85 bp, soybean; 100 bp, sheep; 119 bp, poultry; 183 bp, pork; 212 bp and cow
20 However, for DNA fragments shorter than 100 bp, all sets of parameters performed poorly yielding res
21 ied out with short (36-50 bps), long (75-100 bps), single-end, or paired-end reads, the impact of the
22 nt distances ( approximately 20, 50, and 100 bps), we analyzed the repair outcomes by deep sequencing
25 s (horse; 85 bp, soybean; 100 bp, sheep; 119 bp, poultry; 183 bp, pork; 212 bp and cow; 271 bp) of th
26 ngth, and 10 dsRNA segments ranged from 1192 bp (S4) to 3958 bp (L1), encoding 12 viral proteins.
27 o different DNA regions in beef (106 and 120-bp) and buffalo (90 and 138-bp) mitochondrial genes to d
28 e associated imaging contrast for up to 1200 bp, enabling us to quantify dsDNA length with up to 2 bp
29 tal monitoring) and long amplicons (800-1200 bps, designed to cover the entire resistance genes).
34 cky ends over three helical periods (100-130 bp) using single-molecule fluorescence resonance energy
35 PB-79 (GenBank accession no. KU901725; 1313 bp), Streptomyces sp. Kz-28 (GenBank accession no. KY000
37 CENP-A protects DNA lengths centered on 133 bp, consistent with octameric nucleosomes with DNA unwra
38 Kz-24 (GenBank accession no. KY000533; 1367 bp) showed only 96.2% sequence similarity to S. malaysie
39 Kz-32 (GenBank accession no. KY000536; 1377 bp) and Streptomyces sp. Kz-67 (GenBank accession no. KY
40 Kz-28 (GenBank accession no. KY000534; 1378 bp), Streptomyces sp. Kz-32 (GenBank accession no. KY000
41 eef (106 and 120-bp) and buffalo (90 and 138-bp) mitochondrial genes to discriminate beef and buffalo
42 Kz-67 (GenBank accession no. KY000540; 1383 bp) showed ~89.5% similarity to the nearest type strain
43 the diffusion of various lengths (99 to 1385 bp) of single DNA molecules at rates up to 10 um(2)/s.
44 ses revealed a VB12-riboswitch, cbiMCbl (140 bp), within the 5' UTR that controls the expression of d
45 bp) and subnucleosome-sized (such as 101-140 bp) peaks of digested chromatin fragments with MPE-seq b
46 lysis of the assembled draft genome (1462509 bp) revealed the presence of 29 putative reductive dehal
48 tively large minimum sequence lengths (>/=15 bp) compared with the average length of known transcript
49 nome sequencing using short-read (e.g., <150 bp), next-generation sequencing technologies has reinvig
50 tradictory reports as to whether wider ( 150 bp) NDRs instead contain unstable, micrococcal nuclease-
51 When homology at the matched end is </=150 bp, efficient repair depends on the recombination enhanc
52 When homology at the second end is </=150 bp, second-end capture becomes inefficient and repair sh
55 Mammalian antibody switch regions (~1500 bp) are composed of a series of closely neighboring G4-c
56 op closure involving closely spaced (131-151 bp) loxP sites to investigate the in-aqueo ensemble of c
59 atosome, containing H1 and approximately 160 bp, and then converts it to a core particle, containing
61 intermediate particles containing 154 or 161 bp, corresponding to 7 bp protruding from one or both si
62 A derived from human chromosomes (103 vs 172 bp, p < 0.0001), corresponding to the 3(rd) percentile o
63 onths (16 of 21 patients; mean increase, 175 bp [95% CI, 79 to 271]) and 12 months (16 of 18 patients
64 ence of croaker elovl4, which contained 1794 bp (excluding the polyA tail), including 909 bp of codin
66 ted p53 REs contain spacers between 1 and 18 bp; however, their functional significance is unclear at
67 (fragments with a length between 140 and 180 bp) DNA fragments are recovered and sequenced on Illumin
68 soybean; 100 bp, sheep; 119 bp, poultry; 183 bp, pork; 212 bp and cow; 271 bp) of the mitochondrial c
70 requently observed nucleosome-sized (141-190 bp) and subnucleosome-sized (such as 101-140 bp) peaks o
71 dicted genes) and P. micropora NZ27 (977,190 bp, GC-content = 39.9%, 911 predicted genes) and compare
72 ngth library (565 bp) and mini-barcodes (193 bp) contain enough taxonomic resolution to differentiate
76 ir has a unique 93 base pair (bp)-long (+/-2 bp) ArgR-binding sequence containing two ARG boxes (39 b
80 npaired guanosines flanking short (12- to 20-bp) dsDNA (Y-form DNA) were highly stimulatory and speci
81 tion events involving relatively short (<200 bp) homologous sequences, where RecA-mediated recombinat
82 e markers (i.e. amplicons with less than 200 bp) suitable for DNA metabarcoding by evaluating the tax
83 ith both short amplicons ( approximately 200 bps, representative of ARG amplicon lengths commonly use
84 ites in long introns (especially those >2000 bp) have significantly lower pi (nucleotide diversity) a
85 MuGENT require large arms of homology (>2000 bp) surrounding each genome edit, which necessitates lab
92 plified specific DNA fragments from dog (230 bp), duck (283 bp), buffalo (363 bp), goat (396 bp), and
94 ic amplification of yfiR (375 bp), hlyA (234 bp) and eaeA (151bp), being one of the primers for each
99 ruses (YSLPVs) had genome lengths of 178,262 bp, 171,045 bp, and 171,454 bp, respectively, and were p
100 , poultry; 183 bp, pork; 212 bp and cow; 271 bp) of the mitochondrial cyt b, lectin, 12S rRNA, 12S rR
101 c DNA fragments from dog (230 bp), duck (283 bp), buffalo (363 bp), goat (396 bp), and sheep (477 bp)
103 that nucleotides in the close vicinity (+/-3 bp) of methylated cytosines mutate less frequently.
104 isting of Alexa Fluor 350 as the donor, a 30 bp (9.7 nm) DNA templated K21 aggregate as the bridge, a
105 the nuclease domains are too far apart (>30 bp) to dimerise and produce a double-strand DNA break us
106 With read lengths of currently up to 2 x 300 bp, high throughput and low sequencing costs Illumina's
107 ntifies binding specificity over a large (31-bp) binding site by iteratively fitting a feature-based
108 arcode primer pairs targeting short (127-314 bp) fragments of the cytochrome c oxidase I (CO1) DNA ba
110 luding large (L) (6766 bp), medium (M) (3244 bp) and small (S) (1608 bp) negative sense, single-stran
111 A proximal promoter sequence (-8 to +33 bp) of Frmpd1 binds to neural retina leucine zipper (NRL
112 ime-stamped second hypervariable region (330 bp) of G-gene sequence data (global, n = 483; and Ontari
114 ify two abundant satellite DNAs, alpha (~340 bp) and CapA (~1,500 bp), from short-read clustering of
115 tric GUS assays showed that the shorter (345 bp) and medium (827 bp) fragments of nsLTP promoter func
116 mitochondrial genome is comprised of 16,345 bp, and contains the expected 37 genes and control regio
118 sequence from P. longichromatophora (979,356 bp, GC-content = 38.8%, 915 predicted genes) and P. micr
119 cing technologies produced reads of 25 or 36 bp, and only from a single-end of the library sequence.
123 for the specific amplification of yfiR (375 bp), hlyA (234 bp) and eaeA (151bp), being one of the pr
126 tion of Frmpd1 promoter region, -505 to +382 bp, activated reporter gene expression in mouse retina i
127 s compared with baseline (mean increase, 386 bp [95% CI, 178 to 593]); in exploratory analyses, simil
128 assay for amplification of the P20 gene (387-bp) characteristic of CTV was first designed/optimized a
133 f cognitive control was approximately 3 to 4 bps, demonstrating that cognitive control as a higher-le
134 Nucleotide sequence analysis revealed a 4-bp (AGTC) insertion in the oprD gene, resulting in a fra
135 , in part, to the small DNA fragments (</=40 bp) directly produced by high LET radiation, the size of
136 eferentially to DNA molecules longer than 40 bp, and two CAF1-H3-H4 complexes concertedly associate w
137 othesis, BoHV-1 DNA fragments (less than 400 bp) containing potential GR and KLF binding sites were i
138 ntergenic viral DNA fragments (less than 400 bp) containing two GREs and putative KLF binding sites p
139 mber of bases in the genome (~6200 vs. ~4000 bp), implying that they may have similar functional cons
142 rrays with linker DNA length of 36 bp and 41 bp (3.5 turns and 4 turns of DNA double helix, respectiv
144 amilies and a large genomic deletion (36,445 bp) encompassing exons 2-7 of TRPM1 present in 13 Ashken
145 In addition to that, we identified about 450 bp (upstream of their transcription start site) of the a
147 ngths of 178,262 bp, 171,045 bp, and 171,454 bp, respectively, and were phylogenetically closely rela
148 vel enhancer, located between +4517 and 4662 bp, but the luciferase reporter assay demonstrated that
150 inii var. chinensis (complete genome 122,492 bp), and L. occidentalis (partial genome of 119,680 bp),
151 ostmortem brain and blood found (i) the 4977 bp 'common deletion' was neither the most frequent delet
152 lysis and identified large indels (50 to 499 bp) and CNVs (500 bp and larger) in these accessions.
157 ation events at both short ( approximately 5 bp) and long ( approximately 1 kb) genomic distances, sh
159 ercoiling in fibers with L = 10n and 10n + 5 bp, different flexibility of the two types of fibers, an
160 DNA packaging step-size of approximately 2.5 bp, such that the step-size is probably determined by th
162 novel large insertions, small indels (10-50 bp), and short tandem repeat expansions and contractions
163 variants (SNVs) plus 0.7 million small (1-50 bp) insertions and deletions (indels) that are consisten
168 Once single-end reads are at a length of 50 bp, the results do not change substantially for any leve
169 f the MHC and 22368 variants smaller than 50 bp, 49% more variants than a mapping-based benchmark.
170 eriments to be carried out with short (36-50 bps), long (75-100 bps), single-end, or paired-end reads
173 llite DNAs, alpha (~340 bp) and CapA (~1,500 bp), from short-read clustering of sequencing datasets f
174 ng mitochondrial DNA (mtDNA) haplotypes (500 bp), microsatellite genotypes (17 loci) and sex from 128
175 in human cells at the 1-3 nucleosome (50-500 bp) scale, obtained using ionizing radiation-induced spa
177 ccumulation over the first approximately 500 bp, suggesting that Spt5 is required for transcription p
178 genomic DNA (gDNA) fragments of length >500 bp, and it can successfully discriminate single mismatch
179 n (2.7), and low linkage disequilibrium (500-bp) were observed in Chikhwawa District, Malawi, an area
180 B virus (WSHBV) has a circular genome (3,542 bp) with the prototypical codon organization of hepadnav
181 the transcription start site (distance: 542 bp) than to the start codon (distance: 704 bp), which co
182 the assembled chloroplast genome was 122,561 bp, which is similar to 122,474 bp in the closely relate
183 onstrated that both full-length library (565 bp) and mini-barcodes (193 bp) contain enough taxonomic
184 e chromosome's relatively small size (16,569 bp) necessitates the ability to detect extremely focal e
187 nly identify the germline microhomology (1-6 bp) anticipated to prime such slippage in one-third of F
192 s able to handle reads with both short (<600 bp) and long (>35 000 bp) insert sizes producing high-qu
193 ion involves step-like events of 200 nm (600 bp) size and is strongly suppressed by forces above 1 pN
195 nnealing linked with NHEJ, inserting 4 to 61 bp, mostly originating from the surrounding of breakpoin
196 sive array of long repeat sequences (65-6499 bp) that are associated with CNV, LOH, and chromosomal i
197 n that it requires a minimal sequence of >65 bp; however, other than a GAGA motif, the three Fab-7 LB
198 ome is tripartite, including large (L) (6766 bp), medium (M) (3244 bp) and small (S) (1608 bp) negati
199 anti-silencing properties for the small (679 bp) CBX3-UCO element and we now confirmed this observati
200 d L. occidentalis (partial genome of 119,680 bp), we identified 110 genes, 34 of which represented tR
201 t to generate high-quality large-insert (680 bp) paired-end libraries using a range of 50 pg to 50 ng
202 urth (YSLGV), with a genome length of 73,689 bp, was related to group III in the extended family Mimi
205 s containing a rat proglucagon promoter (700 bp) driving enhanced green fluorescent protein (AAV GCG-
206 2 bp) than to the start codon (distance: 704 bp), which corresponds to open chromatin, especially in
209 etic enhanced green fluorescent protein (720 bp) clones from 0.93% to 83.22%, corresponding to a decr
211 cies, Diabrotica virgifera virgifera (16,747 bp) and Diabrotica barberi (16,632; Insecta: Coleoptera:
213 2, TL increased in the intervention arm (+76 bp) and decreased in the controls (-23 bp) (p=0.050).
216 osome-sized (fragments with a length of <=80 bp) and mononucleosome-sized (fragments with a length be
217 one pair of inverted repeats (IRs) of 26,819 bp, which were separated by one small single copy (SSC;
218 ed that the shorter (345 bp) and medium (827 bp) fragments of nsLTP promoter function as grain-specif
219 onstructed HBV haplotypes in a region of 836 bp, which contains the major immune epitopes and drug re
220 ic primers that amplify fragments (horse; 85 bp, soybean; 100 bp, sheep; 119 bp, poultry; 183 bp, por
222 erence unique insertions spanning 18,048,877 bp, some of which disrupt exons and known regulatory ele
223 s produced 16,115 contigs with an N50 of 889 bp, over 90% of which has significant sequence similarit
225 esponds to the break site for a large (3,895 bp) deletion observed in mitochondrial disease patients.
227 order of magnitude when positioned close (9 bp) to the promoter, in comparison to that for a distal
228 edian deletion size using single sgRNAs is 9 bp, we also obtain large deletions of up to 600 bp.
231 recognition sites are separated by up to 90 bp, Fis represses IHF binding and weak DnaA interactions
234 utions per site within the concatenated (945 bp) nucleotide dataset, implying that probabilistic phyl
235 SuRCA), with an N50 scaffold size of 464 955 bp (based on a genome size of 606 Mbp), 221 640 contigs
236 hs of TmELO1 and TmELO2 were 1005 bp and 972 bp, respectively and the corresponding peptide sequences
237 ously explained by an initial >457 basepair (bp) HSV-1 x HSV-2 crossover followed by back-recombinati
238 mutant of the KNOX1 mutant brevipedicellus (bp) that we termed flasher (fsh), which promotes stem an
239 ding stronger preferences for A*T versus G*C bps, TA versus GG steps, and also suggests enrichment at
240 th an array of Shockley partial dislocations bp:-bp on every basal plane and the 30 degrees twist GB
241 als that in both cases, m1A forms a m1A*T HG bp, which is accompanied by local and global structural
242 ere, we use structural features unique to HG bps (syn purine base, HG hydrogen bonds and constricted
244 anscription, which are found within areas I (bp -2694 to -2561), II (bp -2139 to -1958), III (bp -187
245 ound within areas I (bp -2694 to -2561), II (bp -2139 to -1958), III (bp -1879 to -1799), and IV (bp
248 es revealed that cytokinin levels are low in bp, but fsh restores cytokinin levels to near normal by
249 h suppressor are significantly lower than in bp, which is likely due to elevated expression of JA ina
251 lilee, Israel) and dated to 54.7 +/- 5.5 kyr bp (arithmetic mean +/- 2 standard deviations) by uraniu
252 During the Last Glacial Maximum (25-15 kyr bp), diversity declined markedly, although forbs remaine
253 d radiocarbon years before present (cal. kyr bp), glacial retreat opened an approximately 1,500-km-lo
254 ence of moose and elk at about 11.5 cal. kyr bp, and boreal forest approximately 10 cal. kyr bp.
255 glaciated North America before 12.6 cal. kyr bp, are unlikely to have travelled by this route into th
256 n and mammoth by approximately 12.6 cal. kyr bp, followed by open forest, with evidence of moose and
257 the stabilization of low-boiling point (low-bp) perfluorocarbons (PFCs) at physiological temperature
260 erse mutations encompassing a 643-base pair (bp) deletion (100% efficiency), a stop codon insertion (
261 d dystrophy (adCORD) caused by 12 base pair (bp) deletion at proline 351 of hAIPL1 (P351Delta12) muta
262 rmed that cats homozygous for a 2 base pair (bp) deletion within IQ calmodulin-binding motif-containi
264 associated with approximately 80 base pair (bp) of DNA, which is located at a position that correspo
265 ribe a novel mutation within a 15 base pair (bp) region of the PDE3A gene and define this segment as
267 t folate-associated DMR was a 400-base pair (bp) spanning region annotated to the LGALS3BP gene.
268 e, recognizes a palindromic eight base pair (bp) symmetric sequence, 5-ATTTAAAT-3, and cleaves that t
269 Each peak-pair has a unique 93 base pair (bp)-long (+/-2 bp) ArgR-binding sequence containing two
270 We found a rare noncoding 12-base-pair (bp) deletion (del12) in intron 4 of ASGR1, which encodes
271 xon 18 of BRCA1, we replace a six-base-pair (bp) genomic region with all possible hexamers, or the fu
273 rtant, highly variable, 5 million base-pair (bp) region where diploid assembly is particularly useful
275 es short paired-end tags (2 x 20 base pairs (bp)) to detect two genomic loci that are far apart on li
276 insert sequences of up to 2,049 base pairs (bp), including enhancers and promoters, into the rice ge
279 ble-stranded DNA (dsDNA) over 40 base pairs (bp) in length has been considered immunostimulatory.
280 pproximately 99% and length 6050 base pairs (bp) in the human genome, and 16 Tol2 elements of identit
281 protein (ZF6-DB) that targets 20 base pairs (bp) of a RHOcis-regulatory element (CRE) and demonstrate
282 nslocations have between 0 and 4 base pairs (bp) of microhomology (n = 26), short inserted sequences
285 ly bell-shaped with a peak at 50 base pairs (bp) upstream of the transcription start site (TSS) and 8
290 double helix, Watson-Crick (WC) base pairs (bps) exist in dynamic equilibrium with sparsely populate
291 map since short reads of 50-100 base pairs (bps) from these regions map to multiple locations in ref
292 behind a footprint of up to five base pairs (bps) of the original VH gene that is often further obscu
297 te of cognitive control (in bits per second, bps) in the model fitting to estimate the capacity of co
298 and constricted C1'-C1' distance across the bp) to search for HG bps in X-ray structures of DNA dupl
299 ctivation of its core promoter, localized to bp -160 to +42 within the proximal 5' flanking region of
300 -5-FX interaction with FX-binding protein (X-bp) inhibited transduction in the presence of C57BL/6 se