ライフサイエンスコーパス: browser

1 to explore this data set easily in a genome browser.

2 hown as tracks in the 1D sequence/annotation browser.

3 ted/created and links out to the UCSC genome browser.

4 with any programming language or viewed in a browser.

5 and further explored in the WashU Epigenome Browser.

6 iation data and associated metadata in a web browser.

7 s to the DAPAR functionalities through a web browser.

8 gress and view results in the context of the browser.

9 es are easily visualized directly in the web browser.

10 is open source and runs through R and a web browser.

11 ly available via the web using any major web browser.

12 eractive and fast open source desktop genome browser.

13 make available through the slncky Evolution Browser.

14 available via a user friendly Transcriptome browser.

15 their genomic context on the Ensembl genome browser.

16 through an interactive, multi-tissue network browser.

17 interactions and adopted the JBrowse genome browser.

18 nomics datasets via links to the UCSC genome browser.

19 Requires R and a modern web browser.

20 The output can be filtered and sorted in the browser.

21 nder two conditions is also available in the browser.

22 s to display our SNP data in the UCSC genome browser.

23 isplaying protein sequence features in a Web browser.

24 mapped 3D image data in the context of a web browser.

25 the cDNA coverage plots, in an online genome browser.

26 resolution DNA methylation data on a genome browser.

27 elopmental enhancers from the VISTA Enhancer Browser.

28 visualization environment in any modern web browser.

29 e University of California Santa Cruz Genome Browser.

30 in a single view using the integrated genome browser.

31 ude Ensembl, Ensembl genomes and UCSC Genome Browser.

32 data formats, such as the SARS-CoV-2 Genome Browser.

33 ation data using a lollipop-diagram in a web browser.

34 es through an integrated sequence/annotation browser.

35 on of corrected ATAC-seq signals in a genome browser.

36 ts, and release the results at the 3D Genome Browser.

37 the newly developed Morphonet morphogenetic browser.

38 s a web application which runs in a standard browser.

39 n visualized along the parent protein in the Browser.

40 s deployed via Docker and supports all major browsers.

41 ntific applications that run directly on web browsers.

42 PathwayMapper, which runs in most common web browsers.

43 ble to or better than those of common genome browsers.

44 isualized on both linear and circular genome browsers.

45 rotein structure visualization in modern web browsers.

46 data visualization platforms such as genome browsers.

47 not be easily rendered using standard genome browsers.

48 imensional (3D) structure of proteins in web browsers.

49 for mobile genetic elements in public genome browsers.

50 rich genome context provided by UCSC genome browsers.

51 provided via direct links to the UCSC genome browsers.

52 -node data annotations or even simple genome browsers.

53 enome-based view common to most current read browsers.

54 otspots can be visualized directly in genome browsers.

55 erl and SQLite and is compatible with modern browsers.

56 allelic tracks ready to be viewed on genome browsers.

57 users to create their own visualizations and browsers.

58 res the use of public or commercially hosted browsers.

59 esource is freely distributed via the gnomAD browser(8) and will have broad utility in population gen

60 n expression images with the Zebrafish Brain Browser, a cellular resolution atlas of 264 transgenic l

61 terms/codes, the availability of terminology browsers, a recommended list of codes and mechanisms to

62 open problem, we developed an Assembly Graph Browser (AGB) tool that visualizes large assembly graphs

63 Current sequence alignment browsers allow visualization of large and complex next-g

64 Though several tools, including genome browsers, allow such comparison at a single gene level,

65 an interactive application running in a web browser allowing fast exploration of large-scale populat

66 Additionally, we have provided a web browser allowing interactive exploration of the dataset,

67 Canvas, are now supported by most modern web browsers allowing the blossoming of powerful visualizati

68 The gEVAL browser allows the user to interrogate an assembly in an

69 of gene targeting vectors in the same genome browser, along with gene models, protein translation and

70 We present the Genome Tolerance Browser: an online genome browser for visualizing the pr

71 University of California Santa Cruz genome browser analysis of PACS-1 micro RNAs (miR), revealed tw

72 rsity of California Santa Cruz (UCSC) Genome Browser and accessed through the familiar browser interf

73 the visualization of graphical maps within a browser and allows the user to draw new primers directly

74 can be used as a variant calling format file browser and as a tool to compare different genome assemb

75 le sources of omics data with the nucleosome browser and make side-by-side comparisons.

76 say record page, new BioAssay classification browser and new features in the Upload system facilitati

77 More broadly, these data, available as a web browser and our analyses, demonstrate the genetic mechan

78 microbiome data that runs on any modern Web browser and requires no programming, increasing the acce

79 validation tools and our move towards a new browser and retrieval infrastructure.

80 1KG variants can be accessed through a browser and through the raw and annotated data that are

81 It works on any browser and users can select from a range of stored phyl

82 New genome browsers and annotation tools based on JBrowse/WebApollo

83 ill be accessible via organism pages, genome browsers and BLAST search engines, which are implemented

84 ary is used in the JBrowse and IGV-JS genome browsers and can readily be used by other JavaScript app

85 ly in JavaScript, compatible with modern web browsers and does not require any specialized software.

86 Differences were also observed between browsers and grazers as well as between carnivores that

87 with two functional types of mammals: large browsers and medium-sized mixed feeders.

88 h attendant reductions in the proportions of browsers and mixed feeders through time.

89 hibited greater TDD, but lower PDD, than did browsers and non-ruminants.

90 All major browsers and operating systems are supported.

91 alyses initiated by the user from within the browser, and other dynamic features.

92 ontroller design principles, existing genome browsers, and existing molecular visualization tools.

93 species can be explored via dedicated genome browsers, and searched by Blast.

94 e data can be configured in web-based genome browser applications for display to the general public.

95 lant-borne vibrations introduced by foraging browsers are confirmed as the cue that directs ants to a

96 Current genome browsers are designed to work via graphical user interfa

97 Current genome browsers are not optimized for visualizing the experimen

98 zilla Firefox, Google Chrome, and Safari web browsers are supported.

99 Hub which can be integrated into USCS Genome Browser as an official track for convenient visualizatio

100 redictions for comparison, visualized in the browser as circle plots and topology diagrams.

101 of RNA-seq alignments summarized in eFP-Seq Browser as coverage graphs.

102 le and are accessible through a powerful web browser as well as a variety of annotation file formats.

103 several bioinformatics tools via the user's browser as well as programmatically via Web Services API

104 Despite the large number of web-based genome browsers available nowadays, none of the existing tools

105 the maize electronic Fluorescent Pictograph Browser (bar.utoronto.ca/efp_maize).

106 Here, we describe a novel genome browser based on the Biodalliance platform developed to

107 opFly, a population genomics-oriented genome browser, based on JBrowse software, that contains a comp

108 output readily available, we developed a web browser-based application that visualizes antigenic data

109 P: ileup.js is a new browser-based genome viewer.

110 loped for use by researchers consisting of a browser-based interface, a command-line interface (CLI),

111 virtual screening queries in an interactive browser-based interface.

112 sed strain analysis can be performed using a browser-based interface.

113 and role of genomic features in a graphical browser-based platform.

114 actively fit kinetic traces using convenient browser-based selection tools, ameliorating tedious step

115 Here we present a browser-based Semi-Automated Metabolic Map Illustrator (

116 their dynamical properties explored through browser-based simulations.

117 duce a comprehensive analytical pipeline and browser-based software suite, called MetaOmics, to meta-

118 ave thus developed a processing pipeline and browser-based visualization that allows convenient explo

119 CRIPTION: We have developed a database and a browser-based visualization tool, riboviz, that enables

120 We introduce here oxView, a web browser-based visualizer that can load structures with o

121 sting MS viewers, such as a dependency-free, browser-based, one click, cross-platform install and bet

122 tware suite that provides a dependency-free, browser-based, one click, cross-platform solution for cr

123 This browser brings new insights into the cellular and biolog

124 JBrowse is a fast and full-featured genome browser built with JavaScript and HTML5.

125 a participant's viewing distance in the web browser by detecting a participant's blind spot location

126 download data, visualize results on a genome browser, calculate RPKMs (reads per kilobase per million

127 Any modern web browser can submit those tasks and/or volunteer to execu

128 SNPDelScore comes with a genome browser capable of displaying and comparing large sets o

129 by a diverse range of clients including web browsers, command terminals, programming languages and s

130 display output in a public or private genome browser complete with accessory tools.

131 The Cranfield Genome Browser (CRAMER) is an open-source, lightweight and high

132 The Cancer Genomics Browser currently hosts 575 public datasets from genome-

133 draft human genome assembly, the UCSC Genome Browser database and associated tools continue to grow,

134 The Cistrome Data Browser (DB) is a resource of human and mouse cis-regula

135 The current release of the HIV mutation browser describes the phenotypes of 7,608 unique mutatio

136 Links to the Integrated Genome Browser desktop visualization tool allow researchers to

137 the web' for DNA sequences and expanded the browser display with stacked color graphs and region hig

138 We present the Danish Disease Trajectory Browser (DTB), a tool for exploring almost 25 years of d

139 We support major open source browsers (e.g. Firefox and Chromium/Chrome).

140 are fully compatible with modern mobile web browsers (e.g., phones and tablets), allowing easy integ

141 xplored through three complementary types of browsers, each offering a different view-point.

142 and select optimal CRISPR sites in a genome browser environment.

143 alysis, metabolic pathway analysis, a genome browser, etc.

144 A Genomicus synteny browser explores the conservation of local gene order ac

145 s from common genomic data formats including Browser Extensible Data (BED), bedGraph and Browser Exte

146 n tools can convert genome interval files in browser extensible data or general feature format, but n

147 Browser Extensible Data (BED), bedGraph and Browser Extensible Data Paired-End (BEDPE).

148 Here we introduce GEO2Enrichr, a browser extension for extracting differentially expresse

149 e tool, freely available for installation as browser extensions at the Chrome Web Store and FireFox A

150 Finally, we present a splicing browser Eye Splicer, to facilitate exploration of develo

151 first time, individuals can use the complete browser feature set to view custom datasets without the

152 We present four cases of use of the eFP-Seq Browser for ABI3, SR34, SR45a and U2AF65B, where we exam

153 Our Genome Browser for DNA shape annotations (GBshape) provides min

154 uced in real time and are linked to a genome browser for easy follow-up analysis.

155 in MG-RAST; and use the results presented in-browser for exploration, development, and debugging.

156 domains affected by the LSV, on UCSC Genome Browser for further downstream analysis.

157 ing or display the HTML information on a web browser for human users.

158 g with open access to the data and an online browser for results.

159 ts of the past year include the release of a browser for the first new human genome reference assembl

160 ngs to other bioinformatics resources, a new browser for the PDB archive based on Gene Ontology (GO)

161 Results are displayed directly in the browser for the structure being interrogated enabling th

162 Lastly, we built an interactive data-browser for visualization of our atlas resource.

163 e Genome Tolerance Browser: an online genome browser for visualizing the predicted tolerance of the g

164 easily personalized and customizable genome browsers for effective visualization of diverse types of

165 We created browsers for new species (Chinese hamster, elephant shar

166 and custom regions visualization; new genome browsers for three species (brown kiwi, crab-eating maca

167 of this year include new and updated genome browsers for various assemblies, including bonobo and ze

168 Here, we present a lightweight, flexible browser framework to display large population datasets o

169 ftware that can be loaded offline on the web browser from a local copy of the code, or over the inter

170 (ii) using Epiviz to create a custom genome browser from the Epigenome Roadmap dataset.

171 It is freely available on the Ensembl browser, from the Ensembl Regulation MySQL database serv

172 We released new browser functionality and tools, including improved filt

173 that provide search, data mining, and genome browser functionality, and also by bulk download and web

174 ) and a novel distribution mechanism for the browser (GBiB: Genome Browser in a Box).

175 ganism genomics include Ensembl, UCSC Genome Browser, GENCODE and Flybase.

176 small demersal invertivores, small demersal browsers, generalist carnivores, and piscivores remained

177 Genome browsers generated for four parasitoid wasp species have

178 NCBI's flagship genome browser, Genome Data Viewer (GDV), displays our in-house

179 almost-exclusive grazers to almost-exclusive browsers: Grass consumption inferred from mean sequence

180 patterns characteristic for dietary traits (browser-grazer differences) become indistinguishable.

181 An instance of the JBrowse genome browser has been integrated, facilitating loading of and

182 The UCSC Genome Browser has been under continuous development since its

183 For almost two decades, the Browser has provided visualization tools for genetics an

184 For the past 15 years, the UCSC Genome Browser has served the international research community

185 The Prowler (data browser) has been updated to enable users to more effici

186 Web browsers have long been recognized as potential platform

187 We developed a web browser, HUGIn, to visualize Hi-C data generated from 21

188 ard this end, we developed Integrated Genome Browser (IGB), a highly configurable, interactive and fa

189 ovides 3D molecular visualization in any web browser, improved support for data file download and enh

190 Genome Browser in a Box (GBiB) is a small virtual machine versi

191 tion mechanism for the browser (GBiB: Genome Browser in a Box).

192 ults can be customized and exported from the browser in a format of choice (i.e. JSON, PNG, JPEG and

193 of Health (NIH) will continue to improve the Browser in response to user feedback and believes that t

194 into questions that can be asked from a web browser in seconds.

195 the genome-wide level on the WashU EpiGenome Browser in the context of other rich epigenomic datasets

196 These range from web browsers in mobile phones to the most popular micro serv

197 Assembly Graph Browser includes a number of novel functions including r

198 ubsequent analysis can be viewed using a web browser, including interactive 3D visualizations of the

199 er, in which case users need only have a Web browser installed.

200 Advanced genomic browsers integrate the genetic features surrounding gene

201 s include: a new Mouse Developmental Anatomy Browser; interactive tissue-by-developmental stage and t

202 riable Analysis (V-SVA)] that provides a web-browser interface for the identification and annotation

203 e web application has a user-friendly genome-browser interface to facilitate the selection of the bes

204 by displaying the information through a web browser interface.

205 me Browser and accessed through the familiar browser interface.

206 Both the genome and pathway browsers interface with the EMBL-EBI's Expression Atlas

207 te collections of Web-accessible UCSC Genome Browsers interrelated by an alignment.

208 This browser is designed for the automatic analysis and displ

209 The VEGA browser is unique in that annotation is updated via the

210 Once GBiB is installed, a standard web browser is used to access the virtual server and add per

211 tools, which include JavaScript-based genome browser (JBrowse) and Basic Local Alignment Search Tool

212 e structures with millions of atoms in a web browser, keep the whole PDB archive in memory or parse i

213 tralopithecus anamensis clusters with mammal browsers, Kenyanthropus platyops is distinct from A. ana

214 works on all modern computer and mobile web browsers, making pleiotropic information readily availab

215 rove European access, we have added a Genome Browser mirror hosted at Bielefeld University in Germany

216 tural macroalgal beds, and high abundance of browsers nearby the farms.

217 -person workshops, which produced >20 genome browsers now available for research and education.

218 m the Global Biobank Engine (GBE), an online browser of genome-wide associations in UK Biobank partic

219 the most abundant and ecologically important browsers of coastal saltmarsh grasses of eastern North A

220 of the columns, either for display in a web browser or in JSON format for subsequent programmatic us

221 by other JavaScript applications, in the web browser or in Node.

222 user-friendly interface directly from a web browser or via a standardized RESTful web API to allow e

223 e tools to visualize genomic tracks in a web browser or with a stand-alone graphical user interface.

224 The browser output page provides a 3D interactive display of

225 servers that make Galaxy available via a web browser, performs and publishes analyses using Galaxy, l

226 e from other labs on a widely-used community browser platform with standardized machine-readable data

227 We introduce HiPub, a seamless Chrome browser plug-in that automatically recognizes, annotates

228 f molecular data without the need to install browser plugins or Java.

229 in the classroom demonstrate that the genome browsers produced by G-OnRamp are effective tools for en

230 The genome browsers produced can be transferred to the CyVerse Data

231 The HIV mutation browser provides a valuable new resource for the researc

232 The genome browser provides access to published high-throughput dat

233 The ExAC browser provides gene- and transcript-centric displays o

234 end, the Geography of Genetic Variants (GGV) browser provides maps of allele frequencies in populatio

235 ended to democratize our comparative genomic browser resources, serving the broad and growing communi

236 The browser's publicly accessible databases are the backbone

237 The dbGaP Data Browser serves as a third solution, providing researcher

238 Webina runs Vina entirely in a web browser, so users need only visit a Webina-enabled webpa

239 Similarly to generic genome browser software, svist4get visualizes signal tracks at

240 able VR headsets or in a two-dimensional web browser such as Google Chrome.

241 application is tested to work in modern web browsers such as Firefox or Chrome.

242 A developmental browser summarizes the information in a gene- or territo

243 t using the Vue.js framework, with all major browsers supported.

244 PostgreSQL, Apache, and Perl, with all major browsers supported.

245 lemented in Python and MySQL, with all major browsers supported.

246 SQL, JSP, JavaScript and HTML with all major browsers supported.

247 Additionally, the browser supports direct Javascript coding for personaliz

248 Currently, the browser supports visualizing a large number of file form

249 pecies can be viewed through the new synteny browser, SynView.

250 an optional expansion to the JBrowse genome browser, targeted at developers.

251 sity of California, Santa Cruz (UCSC) Genome Browser team has provided continuous support to the inte

252 redesigned to reduce dependency on outdated browser technologies, and the database can now also be q

253 Recent advances in browser technology may allow for the sharing of trajecto

254 this early eusauropod as a more capable high browser than more basally branching sauropods.

255 rsity of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer.

256 /or developmental stage; an enhanced anatomy browser that now provides access to expression data and

257 all viral gene products and provide a genome browser that visualizes all the obtained data from whole

258 Genome browsers that support fast navigation through vast datas

259 q data exploration tool, called the 'eFP-Seq Browser', that shows the read map coverage of a gene of

260 e quality checked and shared publicly on the browser the next day.

261 With a Web browser, the results of such analyses can be filtered wi

262 d performs data analysis directly in the web browser through modern web and cloud technologies as an

263 e-built, customizable and interactive genome browser to aid combined visualization and interpretation

264 ownload of Viral RP protein sequences, and a browser to facilitate the visualization of Viral RPs.

265 e University of California Santa Cruz Genome Browser to investigate the genomic characteristics of th

266 ns of interest can be identified using a web-browser to perform a 3D spatial search (zbbrowser.com).

267 s from the ENCODE project in a modern genome browser to present a comprehensive atlas of m(6)A methyl

268 h information, MeT-DB also provides a genome browser to query and visualize context-specific m(6)A me

269 rovided by RPF, RPFdb also provides a genome browser to query and visualize context-specific translat

270 genomic sequences; (iv) an intuitive genome browser to support visualization of user-selected data;

271 We have developed a specialized browser to visualize the evidence for retrotransposon in

272 This generates a custom Web browser to visualize, sort, and filter the RNA-seq data

273 This requires access to good genome browsers to enable annotators to visualize and evaluate

274 gine on the Chrome and Internet Explorer web browsers to identify suppliers selling selective androge

275 shape annotations qualitatively in a genome browser track format, and to download quantitative value

276 results are available through a UCSC Genome Browser track hub.

277 y downloadable and accessible as UCSC genome browser tracks.

278 xons, and known/novel splice-junctions), and browser tracks.

279 gorization of searches, data sets and genome browser tracks; redesigned gene pages; effective integra

280 rdware-accelerated applications in the local browser undermine the feasibility of such utilities.

281 Using just a browser, users have access to results as web reports in

282 ults as overlays on the raw data via any web browser using a personal computer or mobile device.

283 Data are visualized in the web browser using an interface based on JavaScript, allowing

284 dels can also be trained and tested in a web browser using free platforms such as Google Colab.

285 We have developed new genome and annotation browsers using JBrowse and WebApollo for two Bos taurus

286 ference Consortium Human Reference 37 genome browser, using predefined criteria guided by known trans

287 The browser view facilitates examining the evidence for or a

288 leles are then displayed in a scrollable web browser view, enabling a more intuitive visualization of

289 We adapted our genome browser visualization tool to the viral genome for this

290 Nucleosome browser was built to visualize the profiles of nucleosom

291 ase of Genotypes and Phenotypes (dbGaP) Data Browser was developed in response to requests from the s

292 Two new tools on the UCSC Genome Browser web site provide improved ways of combining info

293 urativa using Baidu, Bing, Google, and Qwant browsers were performed.

294 major operating systems, and the UCSC Genome Browser, which is open source and free for non-commercia

295 icing factor and RNA binding proteins in the browser window for comparison with m(6)A sites and for e

296 hat we support to 77 and expanded our genome browser with a new scrollable overview and improved vari

297 UCSC Assembly Hubs and JBrowse/Apollo genome browsers with evidence tracks derived from sequence alig

298 The Plant Single Cell RNA-Sequencing Browser, with its comprehensive visualization tools, pro

299 have also developed an NGS resequencing data browser within SoyKB to provide easy access to SNP and d

300 r of a graphics-processing unit (GPU) from a browser without any third-party plugin.