ライフサイエンスコーパス: catalog

1 sion and the Genome Wide Association Studies catalog).

2 n the genome-wide association studies (GWAS) catalog.

3 entally obtained, single-base resolution CGI catalog.

4 ized as sunscreens in the Amazon.com, online catalog.

5 ison to those present in the Integrated Gene Catalog.

6 nified Human Gastrointestinal Protein (UHGP) catalog.

7 rces of uncertainty affecting the historical catalog.

8 t of which have been deposited into the GWAS Catalog.

9 ome Atlas) PanCancer Atlas missense mutation catalog.

10 ad sequencing data require predefined repeat catalogs.

11 y current expression quantitative trait loci catalogs.

12 es in which PS ASOs are active, or inactive, cataloged.

13 A that only recently has been identified and cataloged.

14 ts substrate, Gag, have not been extensively cataloged.

15 ed two redundancy-filtered reference protein catalogs, 2 billion sequences from 640 soil samples (soi

16 We cataloged 28 Nephila spidroins, representing all known o

17 nified framework, we present IntronDB, which catalogs ~50 000 000 introns from over 1000 genomes span

18 We cataloged 809 polymorphic Alu elements mapping to 1,159

19 n exploration with Binner have allowed us to catalog a number of previously unrecognized complex addu

20 q provides an important tool to identify and catalog all classes of open chromatin in plants.

21 mutant primary macrophages to systematically catalog all of the genes bound by (cistromes) and transc

22 single, cell type-agnostic encyclopedia that catalogs all human regulatory elements.

23 This viral catalog and functional analyses provide a necessary foun

24 Here we report a catalog and hierarchy of driver lesions using sequences

25 ancestry, providing a high-resolution allele catalog and linkage-disequilibrium structure of both cla

26 nk (UKBB) and 596 from other resources (GWAS Catalog and literature mining), totaling 5019 unique GWA

27 This study further expands the catalog and properties of organic salts for inexpensive,

28 to the genome-wide association study (GWAS) catalog and the lung and blood eQTL annotation data from

29 tablish a comprehensive antibiotic resistome catalog and to obtain co-occurrence patterns between ARG

30 For these reasons, a cataloging and appraisal of the T-cell epitopes targeted

31 t the computational level by comprehensively cataloging and characterizing its cellular building bloc

32 e samples reduces the material available for cataloging and introduces a bias toward the earlier stag

33 Course catalogs and archival sources show that lectures on ethi

34 This review catalogs and contextualizes all of the plant genes curre

35 tial for the reconstruction of paleo-tsunami catalogs and should be preferentially investigated for c

36 rom 640 soil samples (soil reference protein catalog) and 292 million sequences from 775 marine eukar

37 n genome-wide significant SNPs from the GWAS catalog, and are also more likely to be tissue specific

38 sources: published GWASs, the NHGRI-EBI GWAS Catalog, and UK Biobank-based GWASs.

39 cribes how to use the viral protein families catalog ( approximately 7 h) and recommended filters for

40 hing rate changes, short duration earthquake catalogs are commonly used, and triggered sequences are

41 Complementing the genomic data catalogs are those associated with phenotypes and diseas

42 Earthquake catalogs are thus dominated by small earthquakes yet are

43 ope Database and Analysis Resource (IEDB) to catalog available data related to other coronaviruses.

44 of 3D structures translated into 3D graphs, cataloged based on the connectivity between their second

45 offers several new functions including read cataloging based on genome annotation, optional seed reg

46 Integration could take us beyond cataloging biodiversity losses, and toward predicting ec

47 c information on tumors from 50 cancer types cataloged by the International Cancer Genome Consortium

48 This catalog can function as a critical addition to the pre-e

49 We systematically catalog cancer genes and show that genes vary extensivel

50 To catalog cell types in an unbiased way, we profiled gene

51 ls have provided the tantalizing prospect of cataloging cell type diversity and developmental dynamic

52 (e.g., those produced by the microbiome) and cataloging cell types expressing these receptors.

53 ents, making it suitable for discovering and cataloging chromosomal translocations associated with sp

54 Med, Web of Science, Embase and the NIH GWAS catalog complemented by data extraction from pre-existin

55 dition, we used our REL2 interaction data to catalog conserved repression motifs present on REL2 inte

56 This catalog, containing over 280,000 mutations, reveals a wi

57 As of September 2018, the Catalog contains 5687 GWAS comprising 71673 variant-trai

58 This catalog contains more genome-wide significant eQTLs per

59 This coronavirus essentiality catalog could inform ongoing drug development efforts ai

60 al groups have used single-cell profiling to catalog DA neurons based on their gene expression profil

61 The range of available Catalog data has also been extended with structured ance

62 , using genome-wide association study (GWAS) catalog data, we identified 1 180 132 sQTLs overlapping

63 Protein cluster cataloging defined pelagic upper-ocean viral community p

64 The GWAS Catalog delivers a high-quality curated collection of al

65 The catalog expands the known phylogenetic diversity of bact

66 RNA sequencing (RNA-Seq) make it possible to catalog expressed genes in each cell line.

67 Initial optimization by catalog followed by iterative parallel synthesis guided

68 tablished transcriptomes provide a reference catalog for further detailed studies on human spermatoge

69 ovide an online conditional cis eQTL mapping catalog for whole blood, which can be used to lookup eQT

70 Allele statistics were cataloged for each genomic position that consistently sh

71 provide an effective means for leveraging SV catalogs for short-read SV genotyping experiments.

72 troduce ExpansionHunter Denovo, an efficient catalog-free method for genome-wide repeat expansion det

73 Using a recently generated seismicity catalog from a local network in Oaxaca, we identified 20

74 ta Release 24 (Q1-Q17 DR24) planet candidate catalog from NASA's Kepler mission, specifically compari

75 gene expression profiles or somatic mutation catalogs from tumor cells.

76 emonstrates that metabolomics can be used to catalog FSC, which can be detected in participant urine

77 the number of genome-wide significant loci, catalog functional insights, and enhance our understandi

78 -genome sequencing data from 268 patients to catalog gene-intergenic and intergenic-intergenic fusion

79 ect, which is another large-scale repository cataloging gene expression from healthy individuals.

80 In eQTL catalogs, gene expression is often strongly associated w

81 genotypers using three sequence-resolved SV catalogs generated by recent long-read sequencing studie

82 e Cancer Dependency Map, the latter of which catalogs genes driving cancer progression.

83 collaborative studies around the globe have cataloged genomic and epigenomic alterations in gliomas

84 The scope of the Catalog has also expanded to targeted and exome arrays w

85 ough this data, a comprehensive fistula risk catalog has been created and the most clinically-impactf

86 en GWAS's inception and March 2017, the GWAS Catalog has collected 2429 studies, 1818 phenotypes, and

87 The NHGRI-EBI GWAS Catalog has provided data from published genome-wide ass

88 le eQTL (expression quantitative trait loci) catalogs have become available that can help understand

89 3 probands (69.6%) presented with previously cataloged human genetic disorders and/or defined CNV hot

90 gh HTS technologies have proven their use in cataloging human genome variation, computational analysi

91 y gene expression to annotate these data and cataloged hundreds of thousands of candidate regulatory

92 The resulting catalog illustrates the diversity of sensory types and t

93 379 novel reactions in 2014 that were later cataloged in KEGG 2018, BridgIT predicted the exact or h

94 ss 44 tissues and 6320 pathways or gene sets cataloged in MSigDB as annotation resource, our method s

95 rther, the appearance of renal MCCs has been cataloged in several kidney conditions, where their func

96 Expression of an oncogenic mutant of GIV (cataloged in TCGA) that cannot be phosphorylated by AMPK

97 lysis, and the final autopsy report were all cataloged in the Johns Hopkins Post-mortem CIED Registry

98 ese desired compounds by in vivo experiments cataloged in the LASER database.

99 When applied to the IGC gene catalogs in human gut microbiome ( approximately 10M gen

100 there has been a rapid expansion of circRNA catalogs in the last few years through the utilization o

101 ompared to graphs built from intermediate SV catalogs in the VCF format.

102 This comprehensive catalog includes 52,515 metagenome-assembled genomes rep

103 The catalog includes the calendar date and phenomena descrip

104 ntestinal microbiota has begun to shift from cataloging individual members of the commensal community

105 decomposition of a cancer genome's mutation catalog into mutations consistent with such signatures c

106 The gene catalog is functionally and taxonomically annotated.

107 quently, the completeness of a species' gene catalog is measured using a set of marker genes that are

108 A large part of functional genomics' public catalogs is based on ChIP-seq data.

109 STITCH and STRING are sister databases that catalog known and predicted drug-protein interactions an

110 nted by functional information from the GWAS Catalog, libraries of transcription factor binding sites

111 The results provide the first genome-wide catalog linking gene promoters to their long-range inter

112 ith sufficient resolution to comprehensively catalog mechanosensory neurons and trace individual moto

113 f 99 individuals from present-day Lebanon to catalog modern Levantine genetic diversity.

114 e we exploited this property to sequence and catalog more than 10 million mutations in the protein-co

115 p to 13 vertices (~260 nucleotides), thereby cataloging more than 10 times as many secondary structur

116 miRBase catalogs, names and distributes microRNA gene sequences.

117 The field of metabolomics continues to catalog new compounds, but their functional analysis rem

118 y and hTERT-immortalized human cell lines to catalog NORs in terms of their relative rDNA content and

119 diction supported by RNA-seq data produced a catalog of 1703 predicted microRNAs, 18,882 long noncodi

120 With a comprehensive catalog of 3,915 mammalian EGs, we provide compelling ev

121 mation to create a phased "Platinum" variant catalog of 4.7 million single-nucleotide variants (SNVs)

122 Here, we provide a comprehensive catalog of 419 vTRs belonging to 20 different virus fami

123 We have mapped a comprehensive catalog of 47 321 putative human heart enhancers and pro

124 n this study, we present the first reference catalog of 682 high-confidence lncRNAs based on analysis

125 P DNA (VLP DNA-seq) revealed a comprehensive catalog of active LTR retrotransposons without the need

126 ads to both the human reference genome and a catalog of all possible splicing events developed from t

127 We generated a genomic catalog of almost 200 LASV sequences from clinical and r

128 Our goal is to establish a complete catalog of annotation, expression, processing, conservat

129 the National Human Genome Research Institute catalog of associations to generate instrumental variabl

130 vides links to pathway information, the ZINC catalog of available compounds, and other resources.

131 oupled to the virtually unlimited commercial catalog of available starting materials bodes well for i

132 g eleven stator units, adding to our growing catalog of bacterial flagellar diversity.

133 between protein domains, presents a complete catalog of both structurally resolved and predicted inte

134 We have compiled the largest catalog of breast cancer-associated mencRNAs to date and

135 The catalog of cancer driver mutations in protein-coding gen

136 A comprehensive catalog of cancer driver mutations is essential for unde

137 Finally, we provide OncoNAT, a catalog of cancer-related genes with significant antisen

138 In summary, we present a catalog of candidate genes regulated by coronary artery

139 We created the largest existing catalog of canine genome-wide variation and compared it

140 We generated a comprehensive catalog of changes in macrophage number, origin, and gen

141 By compiling a catalog of characteristics about the 98 prediction metho

142 sequencing, we built the most comprehensive catalog of circRNA species to date: MiOncoCirc, the firs

143 It not only extends the most up to date catalog of circRNAs but also provides a thorough express

144 The catalog of CNVs, CNV-overlapping genes, and their genoty

145 tumor and normal adjacent tissues produced a catalog of colon cancer-associated proteins and phosphos

146 These data provide a comprehensive catalog of common genetic variation in baboons, as well

147 These data provide a catalog of copy-number associated gene dependencies and

148 complete genome assembly and creating a full catalog of correctly predicted genes.

149 The catalog of dCIN genes presented here provides a candidat

150 s required for moving toward a more complete catalog of disease-related genes and variants.

151 This study also provides a catalog of diverse exRNAs useful for biomarker discovery

152 sis of pathway-specific enhancers provides a catalog of diverse transcription factor codes for biolog

153 ranscriptome resource and produced the first catalog of expression quantitative trait loci (eQTLs) in

154 its third phase of creating a comprehensive catalog of functional elements in the human genome.

155 ion can be a powerful tool for expanding the catalog of functional elements.

156 These results provide a comprehensive catalog of functional non-coding regulatory variants tha

157 This study provides a catalog of gene expression changes in human pancreatic i

158 rtium is creating a genome- and phenome-wide catalog of gene function by characterizing new knockout-

159 combination of these two effects governs the catalog of genes encoded on MGEs.

160 Here we present a comprehensive catalog of genes important for meiosis in the fission ye

161 This catalog of genes reveals human orthologs known to be rec

162 the ultimate goal of discovering a complete catalog of genes truly associated with cancer.

163 hromatin structure and function, we create a catalog of genetic variants associated with three stages

164 most cost-effective approach to complete the catalog of genetic variation in a study population.

165 ucleotide and small indels, creating a large catalog of genomic variation for a companion animal spec

166 Construction of a near-complete catalog of HERV-T fossils in primate genomes allowed us

167 e data requires a comprehensive, genome-wide catalog of high-confidence variants called in a set of g

168 To extend the catalog of human core and context-dependent fitness gene

169 ociation Predictions) database, an extensive catalog of human genetic associations mapped to effector

170 nalysis through Proteoform Suite to create a catalog of human heart proteoforms and facilitate the id

171 A comprehensive catalog of human metabolites originated in microbes is c

172 In order to construct an up-to-date catalog of human snoRNAs we have combined data from vari

173 NGS studies have uncovered an ever-growing catalog of human variation while leaving an enormous gap

174 rosophila melanogaster embryos to extend the catalog of in vivo translated small ORFs, and to reveal

175 Although the catalog of known AS events has grown ever since, novel t

176 sequencing efforts have vastly expanded the catalog of long non-coding RNAs (lncRNAs) with varying e

177 ith this aim we constructed a new historical catalog of major explosions and paroxysms through a deta

178 As a result of the expanding catalog of metagenomic viral sequences, there exists a n

179 microbiome-based genomic information into a catalog of microbial traits.

180 ing data from 461 samples into a coordinated catalog of microRNA expression.

181 oject and 1000 Genomes Project resulted in a catalog of millions of single nucleotides and insertion/

182 In conclusion, this work provides a novel catalog of mouse ESCs-expressed lincRNAs with the relati

183 We generated an extensive catalog of nascent and steady-state transcripts in Arabi

184 Overall, our catalog of neuronal subclasses provides new understandin

185 Furthermore, using this catalog of newly discovered lncRNAs, we show that PAX5,

186 ined with in situ hybridization to develop a catalog of nox1, nox2/cybb, nox5, and duox expression in

187 a range of different organisms, to provide a catalog of nucleosome positioning signals in promoters a

188 As the catalog of oncogenic driver mutations is expanding, it b

189 ondarily, this study provides a contemporary catalog of over 100 mechanophores developed to date.

190 ping PDX Finder, a comprehensive open global catalog of PDX models and their associated datasets.

191 ect, which provides easy access to a growing catalog of published simulation models from a range of o

192 Our study provides a catalog of rare epigenetic changes in the human genome,

193 These fused compounds add to the growing catalog of RAS protein-protein inhibitors and show that

194 automated mathematical analysis to derive a catalog of realistic Turing networks.

195 These data expand the catalog of Rkr1 substrates and highlight a previously un

196 controlled by an expanding, yet incomplete, catalog of RNA-binding proteins (RBPs), many of which la

197 aft sequence makes available a comprehensive catalog of sequence differences between the CB4856 and N

198 We generated a catalog of sex differences in gene expression and in the

199 Thus, we present the most comprehensive catalog of similarities and differences in gene expressi

200 analysis identifies and characterizes a wide catalog of somatically acquired and undescribed extrachr

201 discovery of a large but previously unknown catalog of splicing variations in human populations.

202 these conformations, a structurally rigorous catalog of states has not been achieved.

203 This catalog of superlattices allowed us to not only study th

204 We outline the extensive catalog of superlattices prepared to date using hydrocar

205 could diagnose CMV status from the resulting catalog of TCRbeta sequences with high specificity and s

206 ovo database, which provides a comprehensive catalog of the DNMs identified in neuropsychiatric disor

207 To define a complete catalog of the genes that are activated during mouse scl

208 We established a catalog of the mouse gut metagenome comprising approxima

209 types are highly concordant with the current catalog of the National Institute of Standards and Techn

210 cant gains rely on obtaining a comprehensive catalog of the neurons and associated GAL4 lines that ar

211 ification of loci into chromatin types and a catalog of the positions of chromatin loops.

212 e climate factors to produce a comprehensive catalog of trait-climate relationships that differ drama

213 We report the compilation of a large catalog of transcription factor-binding sites across Bac

214 Collectively, we expand the catalog of ubiquitylation targets in Arabidopsis and sho

215 sing gold-standard variant call sets and the catalog of variants from the 1000 Genomes Project.

216 The density of this catalog of variation allowed us to construct high-resolu

217 undance in the gut of children and provide a catalog of viruses to be interrogated further to determi

218 We describe a developmental single-cell catalog of ~220,000 zebrafish brain cells encompassing 1

219 ulture in the laboratory, which can confound cataloging of members and understanding of how communiti

220 ng these molecular defects allows an initial cataloging of molecular pathways that lead to hereditary

221 A challenge to comprehensive cataloging of mosaic mutations and their consequences is

222 With advances in sequencing, the cataloging of personal genetic variation has been expedi

223 racterization of copepod transcripts and the cataloging of the complete set of 79 eukaryotic cytoplas

224 A careful cataloging of the genomic alterations and their response

225 onucleotide microsatellites, allowing a full cataloging of the true targets of MSI in colorectal canc

226 The cataloging of the vascular plants of the Americas has a

227 Deep catalogs of genetic variation from thousands of humans e

228 As expanding catalogs of genome-wide DAP binding maps reveal thousand

229 Our results demonstrate that comprehensive catalogs of GxE interactions are indispensable to thorou

230 d indicate the need to develop more complete catalogs of HOCs from various marine environments.

231 etic mapping, data banks, gene-disease maps, catalogs of human genes and genetic disorders, CRISPR/Ca

232 Comprehensive catalogs of IFN-stimulated genes have been established a

233 Although catalogs of noncoding regulatory elements are steadily i

234 ccessibility profiling studies have provided catalogs of putative open regions, where TFs can recogni

235 CODE/Roadmap Epigenomics Project, we provide catalogs of putative tissue- or cell-type-specific regul

236 n-coding variants can be greatly enhanced by catalogs of regulatory genomic regions in cell lines and

237 ch combines multiple reference sequences and catalogs of variation.

238 pipelines that rely on mapping reads to gene catalogs or genome databases for cultured strains yield

239 riation and disease are well-covered by GWAS Catalog, PopHumanScan, OMIM and COSMIC, CADD being anoth

240 many areas of science and medicine, such as cataloging population genetic variation and diagnosing g

241 stic of senescence-associated phenotypes and catalog potential senescence biomarkers to assess the bu

242 Our findings catalog preparation-dependent sex differences in neurona

243 acids can be removed from either end of the cataloged protein structure before converting it from a

244 The new CGI catalog provides a comprehensive and integrated list of

245 This catalog provides a useful reference for future studies.

246 These catalogs rely on peak calling algorithms that infer prot

247 Linking DEG and molecular eQTLs to GWAS catalog represents an important avenue for identifying b

248 matter." Here, we introduce an algorithm to catalog RiPP biosynthetic gene clusters and chart geneti

249 RAG was first reported in 2004 for cataloging RNA secondary structure motifs using graph re

250 In the last 12 months, the Catalog's user interface was accessed by ~90000 unique u

251 optimized these ligands through an analog-by-catalog search that yielded compound 4, which binds to P

252 manually curated data management system that catalogs sequencing projects with associated metadata fr

253 The number of GWAS catalog SNPs identified as eQTL in the conditional analy

254 scale genomic analyses of human cancers have cataloged somatic point mutations thought to initiate tu

255 GAC cis-elements in the upstream sequence to catalog StBEL5 target genes.

256 We argue that cataloging TE diversity and dissecting the idiosyncratic

257 nd indels (99.92%) and add a validated truth catalog that has 26% more SNVs and 45% more indels.

258 The objective of this review is to catalog the differences observed in the nomenclature use

259 To catalog the diversity and abundance of halogenated organ

260 While major efforts continue to catalog the genomic events associated with human cancer,

261 trometry (MS) or RNA-sequencing (RNA-seq) to catalog the proteins and RNA associated with sites of ac

262 The creation of structured resources that catalog the relationships between drugs and genes would

263 We proceeded to catalog the response of all bud-expressed ERFs, and iden

264 We are only just beginning to catalog the vast diversity of cell types in the cerebral

265 We cataloged the cis elements in embryonic stem cells and f

266 In this study, we have cataloged the isomerization reactions known to occur in

267 It initially cataloged the known X-linked, autosomal recessive and au

268 We have cataloged the relative expression and splicing of SLC2 m

269 focus on emerging themes from recent studies cataloging the diversity of ERV LTRs acting as important

270 By cataloging the effects of every possible mutation within

271 ODE Project have made tremendous progress in cataloging the genomic binding patterns of DNA-associate

272 ctional capacity of a microbial community by cataloging the protein-coding sequences (CDS) present in

273 The first half of this review catalogs the identification and diversity of DNA modific

274 In summary, this high-throughput technique catalogs the potential phosphorylation substrates of mul

275 atranscriptomes (marine eukaryotic reference catalog), the largest free collections of protein sequen

276 ion of cortical circuits, it is necessary to catalog their cellular diversity.

277 decades, but there have been few attempts to catalog their scope or effectiveness.

278 reads from whole-genome clinical samples and cataloging them in "Incremental Databases" that maintain

279 Therefore, it is important to identify and catalog these events.

280 (2020) catalog these redistributed proteins and pinpoint nonsen

281 Here, we catalog this heterogeneity and use it to identify functi

282 human microbiome field has transitioned from cataloging this rich diversity to dissecting molecular m

283 , exome and sequencing studies, allowing the Catalog to adapt to the needs of evolving study design,

284 LDtrait searches the NHGRI-EBI GWAS Catalog to identify susceptibility loci in linkage diseq

285 ng and de novo assembly of an expressed gene catalog (transcriptome) from the giant horsetail (Equise

286 We could catalog two nonoverlapping molecular signatures that wer

287 A recent study cataloging variation in continental African populations

288 mprehensive human vaginal non-redundant gene catalog (VIRGO) that includes 0.95 million non-redundant

289 Using this catalog, we characterize shared and unique cellular gene

290 te the value of such a more complete variant catalog, we conducted a GWAS meta-analysis of kidney fun

291 (NHGRI) genome-wide association study (GWAS) catalog, we determined that 528 unique sQTLs were signif

292 With a high-resolution earthquake catalog, we observe propagating foreshocks leading to th

293 and four western USA 33-yearlong earthquake catalogs, we compare the ability of three different stat

294 such trait-associated SNPs have already been cataloged, which we believe form a great resource for ge

295 The rich detail resolved in this type of catalog will facilitate the next generation of analyses

296 This catalog will serve as a foundation for the development o

297 Additionally, this catalog will serve as reference to screen for possible a

298 o generate an ocean microbial reference gene catalog with >40 million nonredundant, mostly novel sequ

299 This effort resulted in a catalog with 1.81 million earthquakes, a 10-fold increas

300 ChIP-seq studies; and (iii) the latest GWAS catalog with 67,230 published variant-trait associations