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1 or each case and detected by qPCR within the cell-free DNA.
2 nology was also used to remove contaminating cell-free DNA.
3 crobial samples and removal of contaminating cell-free DNA.
4 t DNA extracted from plasma reflected fungal cell-free DNA.
5 performed to identify the tissue sources of cell-free DNA.
6 overy tool for fragmentation analyses and in cell-free DNA.
7 rotic plaques via an increase of circulating cell-free DNA.
8 ng shallow whole genome sequencing (sWGS) of cell-free DNA.
9 oplets to represent circulating viral DNA or cell-free DNA.
11 es by parallel sequencing of maternal plasma cell-free DNA, 3 aberrant genome representation (GR) pro
12 proach to evaluate fragmentation patterns of cell-free DNA across the genome, and found that profiles
13 for cell growth inhibition and -log AE (AE = cell-free DNA alkylation efficiency) were observed, with
14 Combining our approach with mutation-based cell-free DNA analyses detected 91% of patients with can
18 ome sequencing of post-mortem plasma-derived cell-free DNA and eight frozen metastatic cancer tissues
20 e analyses highlight important properties of cell-free DNA and provide a proof-of-principle approach
21 Markov Model, to predict DNA methylation of cell-free DNA and, therefore, tissues-of-origin, directl
22 oRNA, circulating tumor cells, exosomes, and cell-free DNA, and discuss the opportunity of utilizing
23 NA-elastase and histone-elastase complexes), cell-free DNA, and neutrophil biomarkers were quantified
26 mparing placenta to non-pregnant circulating cell-free DNA are recapitulated in pregnant circulating
29 ional blood cultures were compared to plasma cell-free DNA-based 16S ribosomal RNA (rRNA) gene polyme
30 Complementary to existing screening tests, cell-free DNA-based multicancer early detection (MCED) t
31 ian proportion of tumor-derived DNA in total cell-free DNA before treatment was 0.07%, indicating tha
32 2AX activation was in the same rank order as cell-free DNA break induction, although the amount of br
33 , which exploits the diagnostic potential of cell-free DNA by determining not only the presence but a
36 Although Ov16R failed to detect circulating cell-free DNA (ccfDNA) in the plasma of individuals infe
39 ing and whole-genome bisulfite sequencing of cell free DNA (cfDNA) and of matched metastatic tumor bi
40 ssociated copy number variation (CNV) in the cell free DNA (cfDNA) fraction of patient blood plasma.
42 of circulating tumor DNA (ctDNA) from plasma cell free DNA (cfDNA) has shown promise for diagnosis, t
44 ate somatic variant detection in circulating cell free DNA (cfDNA) NGS data requires filtering strate
45 atic disease, deep sequencing of circulating cell free DNA (cfDNA) obtained from patient's blood yiel
49 ively parallel sequencing of maternal plasma cell-free DNA (cfDNA testing) accurately detects fetal a
50 the utility of high-throughput sequencing of cell-free DNA (cfDNA) after bisulfite conversion to map
51 unities for detection of residual disease in cell-free DNA (cfDNA) after surgery but may be confounde
53 ging technologies are reliant on circulating cell-free DNA (cfDNA) and cell-free RNA (cfRNA) applicat
54 ts against IBD by scavenging proinflammatory cell-free DNA (cfDNA) and reactive oxygen species (ROS).
55 on status between tumor-specific circulating cell-free DNA (cfDNA) and tumor tissue, and the evaluati
59 on (MCD) assays, we desire an extra 80 mL of cell-free DNA (cfDNA) blood, but this much extra blood i
60 We hypothesize that targeting of circulating cell-free DNA (cfDNA) by DNases might represent a feasib
64 sis or necrosis, and the load of circulating cell-free DNA (cfDNA) correlates with tumor staging and
69 Here, we demonstrated the use of circulating cell-free DNA (cfDNA) for detection of tissue turnover a
70 g the effectiveness of utilizing circulating cell-free DNA (cfDNA) for disease screening remains a ch
73 ellular damages after liver transplants from cell-free DNA (cfDNA) fragments released from dying cell
74 er 16, 2014, to August 26, 2015, we analyzed cell-free DNA (cfDNA) from baseline plasma samples from
78 patients with mCRPC, the analysis of plasma cell-free DNA (cfDNA) has recently emerged as a minimall
81 measured by (18)F-FDG PET/CT and circulating cell-free DNA (cfDNA) have been separately validated as
82 ng for aneuploidy by analysis of circulating cell-free DNA (cfDNA) have shown high sensitivity and sp
89 hat detection of Borrelia burgdorferi (B.b.) cell-free DNA (cfDNA) in plasma can improve diagnosis of
95 ribed the observation of increased levels of cell-free DNA (cfDNA) in the serum of patients with canc
100 next-generation sequencing (mNGS) of plasma cell-free DNA (cfDNA) is commercially available, but its
106 e of Kaposi sarcoma herpesvirus sequences in cell-free DNA (cfDNA) isolated from the blood of patient
109 currently implemented, unlike non-SCLC where cell-free DNA (cfDNA) mutation profiling in the blood ha
112 hat the majority of somatic mutations in the cell-free DNA (cfDNA) of patients with lung cancer and o
113 een circulating tumor cells (CTCs) or plasma cell-free DNA (cfDNA) on one side and a comprehensive ra
115 rived somatic variants in plasma circulating cell-free DNA (cfDNA) requires understanding of the vari
116 r follow-up investigations, such as prenatal cell-free DNA (cfDNA) screening or cytogenetic testing.
122 eports the performance of an optimized urine cell-free DNA (cfDNA) test using sequence-specific purif
126 e found in an unbiased manner in circulating cell-free DNA (cfDNA) to predict treatment response in H
130 suggested that liquid biopsy (specifically, cell-free DNA (cfDNA)) may better capture the heterogene
132 le-nucleotide variants (SNVs) in circulating cell-free DNA (cfDNA), a mixture of DNA molecules origin
133 ion, immature granulocyte (IG) count, plasma cell-free DNA (cfDNA), and plasma citrullinated histone
134 lored to infer gene expression profiles from cell-free DNA (cfDNA), but current fragmentomic methods
135 A tumor-derived fraction of circulating cell-free DNA (cfDNA), isolated from blood samples, cont
137 omarkers, circulating tumor cells (CTCs) and cell-free DNA (cfDNA), with regard to pancreatic ductal
145 p Sequencing, [CAPP-Seq]) analyses of plasma cell-free DNA collected from 45 patients before and afte
147 irculating leukocytes) and acellular (plasma cell-free DNA) compartments of peripheral blood to clini
148 NA are recapitulated in pregnant circulating cell-free DNA, confirming the ability to detect differen
149 l of the metabolites, including amino acids, cell-free DNA, creatinine, and bilirubin, assigned for t
150 present FinaleDB (FragmentatIoN AnaLysis of cEll-free DNA DataBase), a comprehensive database to hos
153 anti-HLA antibodies (DSA) and donor-derived cell-free DNA (dd-cfDNA) have lead to substantial progre
156 sing marker is the presence of donor-derived cell-free DNA (dd-cfDNA) in the urine or blood of transp
166 loped a pilot study to explore donor-derived cell-free DNA (dd-cfDNA) performance in predicting biops
168 ods present an opportunity for donor-derived cell-free DNA (dd-cfDNA), which can accurately and rapid
173 (V600E) allele load, assessed as circulating cell-free DNA, decreased after starting VMF but remained
176 of a variety of human genetic diseases using cell-free DNA extracted from maternal plasma samples in
178 s in the context of prenatal diagnosis using cell free DNA for monogenic diseases that segregate in a
179 recommendations on the use of donor-derived cell-free DNA for monitoring pancreas graft recipients a
180 the classifier to include information about cell-free DNA fragment size and abundance across the gen
183 methylcytosine (5hmC) changes in circulating cell free DNA from a PDAC cohort (n = 64) in comparison
184 265P mutation was detected in cell-based and cell-free DNA from 15 (83%) of 18 eyes with biopsy-confi
186 next-generation sequencing (mNGS) test using cell-free DNA from body fluids to identify pathogens.
188 We sequenced 341 cancer-associated genes in cell-free DNA from cerebrospinal fluid (CSF) obtained th
189 ive diagnosis of fetal genetic disease using cell-free DNA from maternal plasma samples obtained in t
190 t of unmatched samples including circulating cell-free DNA from non-pregnant and pregnant female dono
193 ingle-stranded DNA sequencing (ssDNA-seq) of cell-free DNA from plasma and other bodily fluids is a p
195 gh massive shotgun sequencing of circulating cell-free DNA from the blood, we identified hundreds of
196 d observed significantly increased levels of cell-free DNA from the donor genome at times when an end
200 , such as deep sequencing and utilization of cell-free DNA, have improved diagnosis and refined both
201 placental apoptosis/necrosis and release of cell-free DNA, hence confirming that maternal serum/plas
202 thylation and fragment length in circulating cell-free DNA, identify differentially methylated region
203 ed that pristane-injected mice had increased cell free DNA in serum, which was not impacted by inhibi
204 ted methods, sequencing identified microbial cell-free DNA in 62, likely derived from commensal organ
205 ns and the tissue-of-origin of tumor-derived cell-free DNA in a blood sample using genome-wide DNA me
211 redictive impact of ultra-deep sequencing of cell-free DNA in patients before and after cystectomy an
212 est that identifies and quantifies microbial cell-free DNA in plasma from 1,250 clinically relevant b
213 ext-generation sequencing in tumor tissue or cell-free DNA in plasma to detect PIK3CA mutations.
221 ostics using free circulating nucleic acids (cell-free DNA) in plasma samples of septic patients.
227 hus, this study analyzed the effect of tumor cell-free DNA, isolated from the blood of prostate cance
231 t MDS genome would be a major contributor to cell-free DNA levels in MDS patients as a result of inef
234 ructural motifs which relies on splint-free, cell-free DNA ligations and recycling of side-products b
235 ural variants as highly sensitive endogenous cell-free DNA markers, enabling the relative abundance m
236 hat maternal serum/plasma concen-trations of cell-free DNA may act as a biomarker of trophoblast well
239 ficient differentiation between cellular and cell-free DNA may have confounded analyses of genome-wid
240 Emerging evidence suggests that microbial cell-free DNA (mcfDNA) and metagenomic testing can enhan
241 MPORTANCEMetagenomic sequencing of microbial cell-free DNA (mcfDNA) enables the identification and qu
242 d to examine the ability of a novel panel of cell-free DNA methylation markers to predict survival ou
244 s multiple challenges: low fraction of tumor cell-free DNA, molecular heterogeneity of cancer, and sa
245 Detection of actionable drug targets in cell-free DNA, more comprehensive molecular profiling in
246 d mortality, whereas other NET assays (e.g., cell-free DNA, myeloperoxidase, and myeloperoxidase-DNA
248 te that TP53 mutations appear in circulating cell-free DNA obtained from patients with de-differentia
249 tissue-of-origin mapping in the circulating cell-free DNA of 59 patients with lung or colorectal can
251 lecular diagnostics based on the analysis of cell-free DNA or single-nucleotide variants (SNVs) out o
254 htened degree of tissue injury with elevated cell-free DNA, primarily originating from innate immune
255 these trials by applying single-cell RNA and cell-free DNA profiling to longitudinal cerebrospinal fl
258 A replication by geminin that is observed in cell-free DNA replication extracts is reversed by the ad
264 mes of placenta and non-pregnant circulating cell-free DNA reveal many of the 51,259 identified diffe
266 es in understanding circulating tumor cells, cell-free DNA/RNA, and exosomes in blood have laid a sol
267 ic analysis of 1,122 EGFR-mutant lung cancer cell-free DNA samples and whole-exome analysis of seven
268 lyze whole genome sequencing data for >1,000 cell-free DNA samples from cancer patients and healthy c
269 2878) and genomic data from paired tumor and cell-free DNA samples revealing loss of heterozygosity.
272 liquid biomarkers identified from methylated cell-free DNA sequenced in plasma were used to generate
274 luated the performance of a plasma microbial cell-free DNA sequencing (mcfDNA-Seq) test for diagnosin
275 ve method for assessing TF activity based on cell-free DNA sequencing and nucleosome footprint analys
277 ptomatic pregnant women who underwent plasma cell-free DNA sequencing for clinical prenatal aneuploid
279 ual care in 52/173 (30.1%), plasma microbial cell-free DNA sequencing in 49/173 (28.3%) and the combi
282 ottleneck by developing a workflow combining cell-free DNA template generation, cell-free protein syn
285 discovered fragmentation disparities in the cell-free DNA that characterize lymphoma-derived ctDNA a
286 ed a blood-based biomarker assay using tumor cell-free DNA to measure systemic tumor burden longitudi
287 ited for liquid biopsy applications based on cell-free DNA to stratify patients and monitor disease p
288 rimary brain tumor in adults, examination of cell-free DNA uncovered patterns of tumor evolution, inc
289 ically and by determination of donor-derived cell-free DNA) until last follow-up at 23 months after C
292 points within the 28-day observation period, cell-free DNA was isolated and analyzed by next-generati
298 cific anti-HLA antibodies, and donor-derived cell-free DNA were monitored in KTRs undergoing MPA with
299 rst confirmed that substantial quantities of cell-free DNA were present in the post-mortem plasma of