ライフサイエンスコーパス: chloroplast genome

1 ating its expression from the nucleus to the chloroplast genome.

2 cleavage site, was expressed via the tobacco chloroplast genome.

3 cated in the large single-copy region of the chloroplast genome.

4 herefore, we expressed the phaA gene via the chloroplast genome.

5 roplasts by inserting the pagA gene into the chloroplast genome.

6 symmetrically transcribed and densely packed chloroplast genome.

7 her vascular plant examined across an entire chloroplast genome.

8 been obtained through transformation of the chloroplast genome.

9 to the codon bias seen in the C. reinhardtii chloroplast genome.

10 stable integration of the CTB gene into the chloroplast genome.

11 e principal mechanism of evolution for their chloroplast genome.

12 vel genetic material into the dinoflagellate chloroplast genome.

13 her than substitution rates elsewhere in the chloroplast genome.

14 with a "lineage effect" acting on the entire chloroplast genome.

15 r which a complementary tRNA is coded by the chloroplast genome.

16 elves are largely based on evidence from the chloroplast genome.

17 ertently contain many reads derived from the chloroplast genome.

18 bp, smaller than 160,100 bp of the C. papaya chloroplast genome.

19 ay of artemisinic acid biosynthesis into the chloroplast genome.

20 gene positively selected in the V. pubescens chloroplast genome.

21 rom Trichoderma reesei and expressed via the chloroplast genome.

22 genetic diversity in any or all regions of a chloroplast genome.

23 e copy region and the inverted repeat of the chloroplast genome.

24 tion, splicing other group II introns in the chloroplast genome.

25 components of the chloroplast, including the chloroplast genome.

26 proclivity for taking up sequences from the chloroplast genome.

27 dentified in both V. pubescens and C. papaya chloroplast genomes.

28 r highly unusual organization of nuclear and chloroplast genomes.

29 and develop a new method GRAPPA-IR to handle chloroplast genomes.

30 ve to the ancestral gene order of angiosperm chloroplast genomes.

31 ces, and by comparing gene arrangements from chloroplast genomes.

32 asymmetric evolution between the nuclear and chloroplast genomes.

33 pa23, which maintained unusual heteroplasmic chloroplast genomes.

34 been reported for at least three land plant chloroplast genomes.

35 t have led to the evolutionary divergence of chloroplast genomes.

36 genomes is eight times lower than among the chloroplast genomes.

37 ed these sequences to 50 modern P. miliaceum chloroplast genomes.

38 l but two of the introns found in angiosperm chloroplast genomes.

39 e potential biotechnological applications of chloroplast genomes.

40 table integration of cry2Aa2 into all of the chloroplast genomes (5, 000-10,000 copies per cell) of t

41 ntegration of the EPSPS gene into all of the chloroplast genomes (5000-10,000 copies per cell) of tra

42 lete nuclear ribosomal cistron, the complete chloroplast genome, a partial mitochondrial genome, and

43 engineering by stable transformation of the chloroplast genome, a technology not afflicted with epig

44 genomic analyses, using both the nuclear and chloroplast genomes, allowed us to detect a speciation e

45 s to assess how more comprehensively sampled chloroplast genome analyses can be used in understanding

46 The chloroplast genome analysis across 12 Morus species iden

47 his is the first report of transcriptome and chloroplast genome analysis of any Anacardiaceae family

48 ots confirmed integration of MSI-99 into the chloroplast genome and achievement of homoplasmy, wherea

49 , demonstrate structural heteroplasmy of the chloroplast genome and announce for the first time the m

50 Therefore, we sequenced the soybean chloroplast genome and compared it to the other complete

51 photosynthetic complexes are encoded in the chloroplast genome and cotranslationally inserted into t

52 Stable transgene integration into the chloroplast genome and homoplasmy were confirmed by Sout

53 he family Caricaceae, only the Carica papaya chloroplast genome and its nuclear and mitochondrial gen

54 ene cluster of the Chlamydomonas reinhardtii chloroplast genome and to assess the role of the photosy

55 localization of the genes in the nuclear and chloroplast genomes and a complex assembly process resul

56 cific transgene integration into the tobacco chloroplast genomes and homoplasmy.

57 ifolia were subsequently evaluated using the chloroplast genomes and individual chloroplast loci.

58 about 30 subunits from both the nuclear and chloroplast genomes and is ubiquitous across most land p

59 the time required for analysis of assembled chloroplast genomes and removes the need for pipelines a

60 coordinate the expression of the nuclear and chloroplast genomes and the expression of genes with the

61 d DNA segments such as the mitochondrial and chloroplast genomes and the nonrecombining portion of th

62 Integration of appropriate transgenes into chloroplast genomes and the resulting high levels of fun

63 the reductive evolution of mitochondrial and chloroplast genomes and the transfer of organellar genes

64 plement of Chlamydomonas with those of other chloroplast genomes and to scan the genomes for sequence

65 The cls8-1 mutant has fewer copies of the chloroplast genome, and fewer, larger chloroplasts than

66 a from the entire nuclear genome, the entire chloroplast genome, and the entire heterostyly supergene

67 nature of essential proteins encoded by the chloroplast genome, and underscores the value of using n

68 arate DNA locations, such as the nuclear and chloroplast genome, and using the split intein to genera

69 new sequences are compared with the tobacco chloroplast genome, and, where data are available, with

70 nces in comparison to eight other angiosperm chloroplast genomes, and these are concentrated near rea

71 92.3% of the genome, including the complete chloroplast genome (approximately 153 kb) and a nearly c

72 f this method has provided new insights into chloroplast genome architecture, gene content and evolut

73 s of occasional paternal transmission of the chloroplast genome are discussed in the framework of usi

74 the expression of bacterial operons via the chloroplast genome are recent landmark achievements in m

75 Chloroplast genomes are commonly used in evolutionary st

76 number of known DNA regulatory sequences in chloroplast genomes are limited.

77 Chloroplast genomes are now produced in the hundreds for

78 Chloroplast genomes are organized as a polyploid DNA-pro

79 Virtually all plastid (chloroplast) genomes are circular double-stranded DNA mo

80 hat can be conducted with publicly available chloroplast genomes as well as methods for building upon

81 Using 19 publicly available reference chloroplast genome assemblies and long-read libraries fr

82 ecies, we show that CLAW can rapidly produce chloroplast genome assemblies with high similarity to th

83 to the growing number of publicly available chloroplast genome assemblies.

84 ird-generation long-read sequencing data for chloroplast genome assembly, these tools may have comple

85 ncing data to describe the variations of pan-chloroplast genomes at the population level for P. euphr

86 atures has not been uniformly applied to all chloroplast genomes available in the sequence databases.

87 Medicago confirm the organization of legume chloroplast genomes based on previous studies.

88 poration was compared at 11 sites within the chloroplast genome between vegetative cells, gametes, an

89 s have been highly expressed via the tobacco chloroplast genome but extending this concept to importa

90 s that requires the interplay of nuclear and chloroplast genomes, but key steps in this developmental

91 ed to Ic (Ic-EPSPSc) was integrated into the chloroplast genome by homologous recombination.

92 ers from the usual gene order for angiosperm chloroplast genomes by the presence of a single, large i

93 for the complete nuclear, mitochondrial, and chloroplast genomes by tiling 5 million 36-mer probes.

94 oenzyme A carboxylase encoded in part by the chloroplast genome can function instead.

95 incompatible species, we show that complete chloroplast genomes can travel across the graft junction

96 The chloroplast genome comparative assessment showed a high

97 Despite the large number of complete chloroplast genomes, comprehensive analyses regarding ge

98 Overall, the chloroplast genomes contained a low amount of diversity

99 We observed that the chloroplast genome contains many more promoters than gen

100 the number of chloroplasts and the number of chloroplast genome copies were significantly higher in t

101 These results indicate that chloroplast genome copy number is a limiting factor for

102 These results highlight the potential for chloroplast genome copy number regulation through altern

103 o low temperatures by examining responses in chloroplast genome copy number, transcript accumulation

104 The small, compact and intronless chloroplast genome (cpDNA) of V. peltata shows striking

105 The lycophyte chloroplast genome data also enable a better reconstruct

106 The Chloroplast Genome Database (ChloroplastDB) is an intera

107 Chloroplast genomes encode approximately 37 proteins tha

108 ale and Dendrobium catenatum, most of the 11 chloroplast genome-encoded ndh genes (cp-ndh) have been

109 In this work, we have characterized the chloroplast genome-encoded ycf4 (for hypothetical chloro

110 The chloroplast genome encodes key components of the photosy

111 Chloroplast genome engineering was applied to express se

112 tilizing valuable information from sequenced chloroplast genomes enhanced expression of eukaryotic hu

113 introduction of any desired change into the chloroplast genome, even in the absence of phenotypic se

114 The increase in the copy number of the chloroplast genome exceeded the rise in the number of ch

115 mparative analyses showed that the Vaccinium chloroplast genomes exhibited an overall highly conserve

116 Nuclear and plastid (chloroplast) genomes experience different mutation rates

117 rB genes to modify plants via the nuclear or chloroplast genome, expressing organomercurial lyase and

118 obtained entire nuclear, mitochondrial, and chloroplast genomes for 15 species representing all majo

119 CLC Genomics Workbench to assemble complete chloroplast genomes for all nine species.

120 We also employed complete chloroplast genomes for phylogenetic analyses including

121 rizontal transfer into the E.myxocylindracea chloroplast genome from a cyanobacterial donor and shoul

122 It is shown that the two strands of the chloroplast genome from Euglena gracilis are asymmetric

123 trate a system for cloning and modifying the chloroplast genome from the green alga, Chlamydomonas re

124 In the last 3 decades, chloroplast genomes from a few economically important cr

125 e introgression by analyzing the nuclear and chloroplast genomes from a panel of wild (Glycine soja)

126 The availability of over 800 sequenced chloroplast genomes from a variety of land plants has en

127 ustomise, and use Snakemake tool to assemble chloroplast genomes from chloroplast long-reads found in

128 across Jersey are attempting to sequence the chloroplast genomes from daffodils that they have collec

129 A test of GRAPPA-IR using divergent chloroplast genomes from land plants and green algae rec

130 still tentative pending the large number of chloroplast genomes from other key lineages that are soo

131 At present, complete chloroplast genomes from over 4000 species have been dep

132 high throughput sequencing to assemble three chloroplast genomes from the medieval grains and then co

133 The psbA gene of the chloroplast genome has a codon usage that is unusual for

134 and accompanying circular mitochondrial and chloroplast genomes have been assembled from the elite c

135 se relatives of Apicomplexa, have an unusual chloroplast genome, highly reduced and fragmented into s

136 chloroplast genes and the tRNAs coded by the chloroplast genome, however, is not observed in all syno

137 rcurial lyase (merB), respectively, into the chloroplast genome in a single transformation event.

138 Chloroplast genomes in land plants harbor approximately

139 Chloroplast genomes in plants and green algae contain nu

140 ranscriptionally active spacer region of the chloroplast genome, in a nuclear RbcS antisense line and

141 s being degraded by the mutation bias of the chloroplast genome, in other words, that the psbA gene i

142 n codon usage in each of the fully sequenced chloroplast genomes, in addition to Chlamydomonas reinha

143 H. akashiwo, not previously reported in any chloroplast genome, include tyrC, a tyrosine recombinase

144 ue genes were identified in P. hysterophorus chloroplast genomes, including 85 protein-coding genes,

145 al quadripartite structure commonly found in chloroplast genomes, including inverted repeat regions (

146 e next few years, as the number of sequenced chloroplast genomes increases rapidly, the tools availab

147 g crop plants for disease resistance via the chloroplast genome instead of the nuclear genome is desi

148 The chloroplast genome is an integral part of plant genomes

149 species from the same family, the tung tree chloroplast genome is distinct with 85 single nucleotide

150 pattern of molecular evolution of the plant chloroplast genome is extremely complex as a result of a

151 Significantly, the incompatible chloroplast genome is naturally found in xeric habitats

152 ous engineering of multiple sites within the chloroplast genome is now possible.

153 xpressed via the tobacco (Nicotiana tabacum) chloroplast genome is reported here.

154 y conserved in bacterial, mitochondrial, and chloroplast genomes, its exact biological function remai

155 eristic rearrangements in both copies of the chloroplast genome large inverted repeat.

156 blocks signaling by limiting nucleotides for chloroplast genome maintenance.

157 ulations from each region, using nuclear and chloroplast genome markers, and combined population gene

158 nd plants, and analyses of the multigene and chloroplast genome matrices provided moderate to strong

159 aneously lose photosynthesis via deletion of chloroplast genome minicircles.

160 The origin of this highly deviant chloroplast genome most likely occurred before the emerg

161 nal forms of cytochromes f and c6 owing to a chloroplast genome mutation that prevents heme attachmen

162 on sequencing and analysis showed a complete chloroplast genome of 150,279 bp, comprising 38.6% GC.

163 of techniques to sequence the first complete chloroplast genome of a lycophyte, Huperzia lucidula.

164 e mutant psaB genes were introduced into the chloroplast genome of Chlamydomonas reinhardtii.

165 Here we report on the highly deviant chloroplast genome of Cladophorales green algae, which i

166 survey of restriction site variation in the chloroplast genome of Coreopsis grandiflora.

167 group II intron from a cyanobacteria to the chloroplast genome of Euglena myxocylindracea.

168 The chloroplast genome of Glycine is 152,218 basepairs (bp)

169 Compared to the chloroplast genome of Jatropha curcas, a species from th

170 The chloroplast genome of land plants contains only a single

171 We found that the chloroplast genome of M. rubra ranged from 159,396 to 15

172 The chloroplast genome of M. rubra was at least 103 bp large

173 equence, assemble, and annotate the complete chloroplast genome of M. rubra, and (2) to perform phylo

174 er in a number of noncoding regions from the chloroplast genome of members of the grass family (Poace

175 re sequencing, assembling, and annotation of chloroplast genome of one of the main Siberian boreal fo

176 Here, we sequenced and annotated the chloroplast genome of P. fraxinifolia from Hyrcanian for

177 The chloroplast genome of P. fraxinifolia was 160,086 bp in

178 We investigated the chloroplast genome of P. hysterophorus in this study.

179 Our analysis revealed that the chloroplast genome of P. hysterophorus spans a length of

180 This lack of biological variation in the chloroplast genome of P. torreyana allowed us to estimat

181 hether there is any variation present in the chloroplast genome of Pinus torreyana (Parry ex Carriere

182 nd a selection of gene-encoding tRNAs in the chloroplast genome of the fern Adiantum capillus-veneris

183 In this proof of concept, we engineered the chloroplast genome of the green microalga Chlamydomonas

184 We sequenced the chloroplast genome of Trachelium caeruleum L.

185 The chloroplast genome of V. litorea was found to be 119.1 k

186 Here, we sequenced and assembled the chloroplast genome of Vasconcellea pubescens A.DC.

187 We report the assembly of the nuclear and chloroplast genomes of D. oligosanthes, from high-throug

188 anelle genome of Cyanophora paradoxa; in the chloroplast genomes of diatoms, dinoflagellates, and red

189 rom Hyrcanian forests and compared it to the chloroplast genomes of five other Pterocarya species.

190 The chloroplast genomes of Pulsatilla were very similar and

191 procedures are applied to 33 genes from the chloroplast genomes of rice, tobacco, pine, and liverwor

192 Here, we compared the complete chloroplast genomes of seven Pulsatilla species.

193 The chloroplast genomes of two wild (undomesticated) accessi

194 Transformation of the chloroplast genome offers key advantages over traditiona

195 lacustris (strain UTEX 2505) has the largest chloroplast genome on record: 1352 kb with ~90% non-codi

196 Of the 12 pre-mRNA introns in the maize chloroplast genome, only one is normally spliced in both

197 with a plasmid that lacked homology with the chloroplast genome or with the same plasmid carrying a p

198 esis in dinoflagellates resulting from their chloroplast genome organization may explain why dinoflag

199 Chloroplast genome organization, gene order, and content

200 The multiple copies of the chloroplast genome (plastome) are condensed and organize

201 noid molecular evolution was investigated by chloroplast genome (plastome) scale analyses.

202 For example, the Huperzia chloroplast genome possesses the bryophyte gene order fo

203 nd that RNA editing may play a major role in chloroplast genome processing.

204 The assembled nuclear, mitochondrial and chloroplast genomes provide a significant source of gene

205 Integration of CPL into the chloroplast genome provides a dramatic demonstration of

206 availability of polymorphic SSR loci in the chloroplast genome provides new opportunities to investi

207 NP number differentiating any two Pulsatilla chloroplast genomes ranged from 112 to 1214, and provide

208 SNPs for any two Echinacea chloroplast genomes ranged from 181 to 910, and provided

209 A genes has been suggested as a mechanism of chloroplast genome rearrangements.

210 ble integration of the merAB operon into the chloroplast genome resulted in high levels of tolerance

211 using specific primers for a locus from the chloroplast genome, ribulose diphosphate carboxylase.

212 However, in phylogenies the chloroplast genomes separated into two clades, similar t

213 enetic markers, (d) generation of a complete chloroplast genome sequence and analyses of chloroplast

214 a genomic structural character matrix, and a chloroplast genome sequence matrix, using maximum likeli

215 We surveyed the chloroplast genome sequence of clade-member Adiantum cap

216 The complete chloroplast genome sequence was obtained for Siberian la

217 geted metagenomics has provided the complete chloroplast genome sequence, and the distribution, for a

218 to 8x depth coverage to obtain the complete chloroplast genome sequence.

219 enomes share little synteny with other algal chloroplast genomes sequenced to date.

220 Surprisingly, chloroplast genome sequences are available only for diat

221 d species identification assays derived from chloroplast genome sequences are discussed in light of p

222 Lack of complete chloroplast genome sequences is still one of the major l

223 oa, we report the complete mitochondrial and chloroplast genome sequences of quinoa accession PI 6148

224 In this review, we discuss the impact of chloroplast genome sequences on understanding the origin

225 e, from an alignment of three complete grass chloroplast genome sequences.

226 A universal challenge to chloroplast genome sequencing studies is the retrieval o

227 senting populations from eight US states for chloroplast genome sequencing.

228 The H. akashiwo chloroplast genomes share little synteny with other alga

229 The Trachelium chloroplast genome shares with Pelargonium and Jasminum

230 Successful transformation of the chloroplast genome should address concerns about transge

231 monas and tobacco, the transformation of the chloroplast genome still represents a challenging techno

232 ts from this study provide insights into the chloroplast genome structure of M. rubra, offering a fou

233 The reference complete chloroplast genomes, such as one described here, would g

234 hlamydomonas strain spa19 bears two distinct chloroplast genomes, termed PS+ and PS-.

235 A chloroplast genome that is composed only of linear DNA m

236 e found to contain related inversions of the chloroplast genome that resulted from recombination betw

237 In the plant chloroplast genome the codon usage of the highly express

238 erved duplicated regions are present in many chloroplast genomes, the inference of inverted repeats i

239 d the availability of at least 200 sequenced chloroplast genomes, the number of known DNA regulatory

240 h the tufA sequence, and introduced into the chloroplast genome; the 3' UTR was also substituted for

241 In the C. papaya chloroplast genome, there are 46 RNA editing loci with a

242 y integrated and expressed using the tobacco chloroplast genome to confer desired agronomic traits or

243 analog of magainin 2, was expressed via the chloroplast genome to obtain high levels of expression i

244 demonstrate the ability of the Chlamydomonas chloroplast genome to undergo a large inversion without

245 Here, we present the use of full chloroplast genomes to distinguish between all 9 reporte

246 dination between nuclear, mitochondrial, and chloroplast genomes to form essential multi-enzyme cyton

247 a His-Asp phosphorelay mechanism may affect chloroplast genome transcription in a manner similar to

248 egrated into the tobacco (Nicotiana tabacum) chloroplast genome under the control of the light-regula

249 few, if any, of the group II introns in the chloroplast genome undergo autocatalytic splicing in viv

250 on of an unmodified CTB-coding sequence into chloroplast genomes (up to 10,000 copies per cell), resu

251 e characterized mango leaf transcriptome and chloroplast genome using next generation DNA sequencing.

252 n of the petunia EPSPS gene into the tobacco chloroplast genome using the tobacco or universal vector

253 yses, including data from cyanobacterial and chloroplast genomes using a Bayesian approach, with the

254 developed a simplified method for sequencing chloroplast genomes, using fosmids selected from a total

255 rscore the need for sequencing complete crop chloroplast genomes, utilization of endogenous regulator

256 irmed transgene integration into the lettuce chloroplast genome via homologous recombination at the t

257 ccurring in noncoding sequences of the plant chloroplast genome violate the independence of sites tha

258 sources, including the cucumber nuclear and chloroplast genomes, viruses, and bacteria.

259 Length of the assembled chloroplast genome was 122,561 bp, which is similar to 1

260 merAB operon was stably integrated into the chloroplast genome was confirmed by polymerase chain rea

261 homologous region present in the black pine chloroplast genome was incorporated, virtually no editin

262 When the sequence of the Euglena gracilis chloroplast genome was reported in 1993 the alpha-subuni

263 The chloroplast genome was sequenced with 161,528 bp in leng

264 A maximum-likelihood tree based on the chloroplast genomes we sequenced here was constructed, a

265 Using stable transformation of the chloroplast genome, we have generated ycf4 knockout plan

266 By making use of the plasmid-like fragmented chloroplast genome, we have introduced novel genetic mat

267 ss to the historical record contained within chloroplast genomes, we have adapted multiplex sequencin

268 Transgenes stably integrated into the cotton chloroplast genome were maternally inherited and were no

269 ar DNA fibers with one to four copies of the chloroplast genome were present, with monomers being the

270 2 coffee genotypes was sequenced, and entire chloroplast genomes were de novo assembled.

271 The chloroplast genomes were fairly conserved, but the mitoc

272 Twenty-five chloroplast genomes were sequenced, and 1127 plant acces

273 Genetic relationships between chloroplast genomes were studied to trace the evolutiona

274 mitochondrial genomes were sequenced, and no chloroplast genome-wide comparison across genera was con

275 psaA, and may be rescued by transforming the chloroplast genome with an intron-less version of psaA.

276 al transformation, and transformation of the chloroplast genome with synthetic operon constructs.

277 gs, AP003280, includes almost 57 kb (45%) of chloroplast genome with the intact copies of 22 KPC gene

278 braries can additionally be used to assemble chloroplast genomes with little to no extra cost.

279 These organisms have a highly unusual chloroplast genome, with genes located on multiple small

280 BTD, Verdant provides accurate annotation of chloroplast genomes without manual intervention.