ライフサイエンスコーパス: clade

1 ocks, shed little light on the origin of the clade.

2 gent phylogenetic topology for the white oak clade.

3 insight into the Laurasian evolution of this clade.

4 evelopmental percentage of embryos from that clade.

5 ce of locomotor diversity within the hominin clade.

6 cholocation being an ancestral trait in this clade.

7 gher levels in mammalian cells than pandemic clade.

8 ecies clustered into one distinct and robust clade.

9 re collectively known as the nitrogen-fixing clade.

10 o the little-characterized gamma(2)-fimbrial clade.

11 s in human pathogenic yeasts of the CUG-Ser1 clade.

12 etwork data to evaluate consequences of this clade.

13 100-fold depending on the bNAb and the HIV-1 clade.

14 nd XDR-TB particularly involving the Lisboa3 clade.

15 o determine its placement within the hominin clade.

16 phenotypic polymorphism in many species of a clade.

17 s underlying cell-type specification in this clade.

18 obably represents a novelty in the Acrodonta clade.

19 logy of anoles, a diverse Neotropical lizard clade.

20 stence of an AC (Archaeplastida + Cryptista) clade.

21 ectly repressing genes of the APETALA2 (AP2) clade.

22 is shows that FabIs fall into four divergent clades.

23 ion of hgcAB sequences affiliated with other clades.

24 ogeny containing eight highly resolved major clades.

25 ominantly associated with the Lisboa3 and Q1 clades.

26 llen dispersal on plant speciation for model clades.

27 f the sampled tea accessions into five major clades.

28 jecting pollen from foreign species or whole clades.

29 roup I, II) and Southeast Asia (subgroup II) clades.

30 nging to males and females of five different clades.

31 asive throughout the evolutionary history of clades.

32 netically differentiated from other M. bovis clades.

33 behind the origin and early evolution of new clades.

34 ffected genus-rich, ecologically homogeneous clades.

35 romosome evolution across different nematode clades.

36 to angiogenic and proliferative/ immunogenic clades.

37 sed identification and visualization of cell clades.

38 HIV-1 Env and can impact a variety of viral clades.

39 ancestral character states of major mollusc clades.

40 ulation was dominated by sequence type ST258 clade 1 (86%) with variations in capsular locus (cps) an

41 Clade 1 (odds ratio [OR], 3.36; 95% confidence interval

42 We also show that strains from clades 1, 2, 3, and 5 derived a major proportion of thei

43 Members of clades 1-3 have been structurally and biochemically char

44 so found in other members of the spinosaurid clade(15,16), which had a near-global distribution and a

45 itol polyphosphate phosphatases (MINPPs) are clade 2 histidine phosphatases (HP2P) able to carry out

46 ed chromosome-level genome sequences of four Clade 2 isolates, which displayed differences in genomic

47 ter, ACE1, in a clonal M. oryzae population (Clade 2).

48 the exceptionally high mortality related to clade 2.1 H5N1 infections in Indonesia.

49 iruses of all three genotypes and a parental clade 2.3.2.1a strain (H5N1-R0) infected and replicated

50 5N8 highly pathogenic avian influenza (HPAI) clade 2.3.4.4 virus spread to North America by wild bird

51 h increased virus fitness in chickens as the clade 2.3.4.4.

52 was updated from clade 3C.3a in 2015-16 to a clade 3C.2a strain for both 2016-17 and 2017-18.

53 th A(H1N1)pdm09 and 1350 (49%) with A(H3N2); clade 3C.3a accounted for 977 (93%) of 1054 sequenced A(

54 e influenza A(H3N2) vaccine was updated from clade 3C.3a in 2015-16 to a clade 3C.2a strain for both

55 illness due to antigenically drifted A(H3N2) clade 3C.3a influenza viruses prompted concerns about va

56 The predominance of A(H3N2) clade 3C.3a viruses during the latter part of the 2018-2

57 N2); VE was 5% (-10% to 19%) against A(H3N2) clade 3C.3a viruses.

58 We conclude that the clade 4 FabI, found in the Bacteroidetes inhabitants of

59 and conformational changes that distinguish clade 4 FabIs.

60 tified multidrug-resistance (MDR)-associated clade 4.3.1 as the dominant genotype.

61 me low-level admixture was also observed for clade 5 genomes, but only for non-African viruses.

62 the VZV phylogeny, including the ancestor of clade 5 strains.

63 This pattern indicates that the clade 5 VZV strains do not represent recent introduction

64 1N1)pdm09 viruses with antigenically drifted clade 6B.1A 183P-5A+156K HA genes (VE 7%; 95%CI: -14 to

65 racts with and ubiquitinates the Arabidopsis clade A type 2C phosphatases (PP2Cs) ABI/HAB group and A

66 neutralizing activity of nine bNAbs against clade A, C, and D HIV isolates derived from cells of Afr

67 ypsin, SERPINA1 (serpin peptidase inhibitor, clade A, member 1), in determining chronic obstructive p

68 clinical isolates into two sub-clades within clade A.

69 Here, we show that the rapid activation of clade-A mitogen-activated protein kinases (MAPKs) MPK3 a

70 1,477 isolates (95%) in the hospital-adapted clade A1.

71 extinction within Neoaves, in which multiple clades achieved higher relative brain sizes because of a

72 eohistological sampling of 17 mostly extinct clades across the amniote tree revealed preservation of

73 Within-clade allometric relationships represent standard laws o

74 ut we did observe more oligotrophic ASVs and clades along with depth variation in Synechococcus diver

75 body size evolution in five major vertebrate clades (amphibians, birds, mammals, ray-finned fish and

76 The reconstruction and characterization of clade ancestors demonstrated that the differences among

77 Both enzymes belong to the UGT family d-clade and are specific for flavonol glycosides and their

78 s amplicon sequence variants (ASVs) and that clade and ASV composition can change over the course of

79 volution are detected at the origin of major clades and body plans, but not concurrent with previousl

80 yse the dispersal dynamics of different H5N1 clades and investigate the impact of environmental facto

81 yly and early emergence of the various DPANN clades and their role in life's evolution are debated.

82 ought to identify over-represented microbial clades and understand how landscape variables and host t

83 correlated with taxonomic diversity in many clades, and ecological divergence is often assumed to be

84 s first split into Sinitic and Tibeto-Burman clades, and support the existence of key internal relati

85 d encourage a more thorough investigation of clade- and parasite-specific facets of nematode sensory

86 cycads from angiosperm hosts, yet only a few clades appear to have radiated following their transitio

87 a minority of lineage-specific genes in both clades are not well explained by this novelty-free model

88 These clades are now thought to be evolving in a polycentric m

89 Species in certain Pooideae clades are predisposed to evolve annuality from perennia

90 as morphologists have generally placed this clade as the sister taxon of the rest of Conchifera wher

91 Most studies on this topic have used clades as phylogenetically independent replicates for pa

92 ffer markedly among the three major dinosaur clades, as do the configurations of respiratory pores.

93 development of similar approaches for other clades, as well as exploration of functional diversifica

94 ncing were successfully employed for isolate clade assignment.

95 ese organisms form an oil-reservoir specific clade based on the phylogenies of both 16S rRNA genes an

96 ryzae) into three major globally distributed clades based on population genomic analyses.

97 ant to allow identifying known symbiont-host clades based on routes of gene transfer.

98 Ecologically differentiated clades became taxonomically diverse over time because th

99 ained unresolved within the multiple-species clade because of inconsistent gene trees.

100 With Synechococcus clades being prominent from the tropics to the Arctic an

101 hologous genes, revealing several geographic clades but also high levels of gene discordance.

102 ooms, with this switch occurring in multiple clades, but we present initial evidence that this appare

103 ID 896 resulted in augmented killing of the clade by LL-37.

104 sentatives from all three classes in the APM clade by using transcriptomic and metagenomic data and p

105 he early evolution of giant body size in the clade (by ~ 50 Ma), and they likely represent not only t

106 rticipants in the per-protocol set developed clade C Env binding antibodies after the second vaccinat

107 per 0.5 mL) combined with 250 mug adjuvanted clade C gp140 protein.

108 ylactic or therapeutic interventions against clade C HIV-1.IMPORTANCE We sought to enhance the infect

109 Moreover, the clade C SHIV-325cH challenge stock may prove useful for

110 VF) and observed a 3mut-stabilized consensus clade C-Env trimer with FP8v2 to boost the breadth elici

111 glycine-helix breaking) yields well-behaved clade C-Env trimers capable of boosting the breadth of F

112 ence of plasma bnAbs in a cohort of 51 HIV-1 clade-C infected infants and identify viral factors asso

113 Competition among species and entire clades can impact species diversification and extinction

114 We present CLADES (cell lineage access driven by an edition sequenc

115 pleted a draft genome sequence of an African clade (clade III) strain cultured from the urine of a pa

116 logenetic analysis places Ptr1 in a distinct clade compared with Mr5 and RPS2, and it therefore appea

117 for conifers, we tested the hypotheses that clade competition or climate change led to the decline o

118 und to be dominated by an endemic and unique clade composed of strains evolved from a common ancestor

119 tochondrial and nuclear trees, including the clade comprising the asexual vagrant species R. arbuscul

120 the V280A variant (P < 0.0001 in both the C clade consensus and in the Indian study cohort consensus

121 lly-informed algorithm to identify bacterial clades conserved across the metapopulation.

122 Curiously, the clade containing the lapinised vaccine viruses that were

123 aining NrfA proteins are also represented in clades containing Ca(2+)-dependent enzymes, suggesting c

124 Clade D strains that are rarely detected in the United S

125 is of highly pathogenic avian influenza H5N1 clade data in the Mekong region.

126 e unique to vertebrates and form an array of clade-defining adult features.

127 Five clades, determined by genomic analysis and named by the

128 revealed that the Caudovirales RNAP forms a clade distinct from cellular homologs, suggesting an anc

129 These observed clade distributions are in line with previous observatio

130 volved independently in different bilaterian clades during the Cambrian Explosion.

131 ositive fitness effects for individuals of a clade (e.g. insect pollination for plants) generally inc

132 ., [13-16]) or been restricted to individual clades (e.g., [11, 12, 16]).

133 ecies and dated molecular phylogenies for 21 clades endemic to the CFR.

134 ncluding strain transitions within the SAR11 clade, enrichment of Prochlorococcus, predicted smaller

135 arcticus within the Vacatina (i.e., Robusta) clade, estimated to have occurred in the Mesozoic (ca. 1

136 grouped into three phylogenetically distinct clades: Eurasian and American wolves and domestic dogs.(

137 h lack root hairs and the root hair expansin clade EXPA-X.

138 is an ancient and frequently-studied lizard clade for which phylogenetic resolution is notoriously e

139 Both gene orders have persisted within these clades for ~200 Ma.

140 regarding the function of specific expansin clades, for which there are at least 16 in flowering pla

141 biochemically characterized, but the fourth clade, found in members of phylum Bacteroidetes, is unch

142 function remains unknown, constitute a third clade from the RsbQ-like protein family.

143 In the clade G1, exCNLs have evolved through recent proliferati

144 In the clade G3, exCNLs have substantially elongated their N-te

145 es, including the enigmatic Saccharibacteria clades G3 and G6, which had distinct functional repertoi

146 ncreased relative abundance of the bacterial clades Gammaproteobacteria and Desulfovibrionaceae and d

147 of positive selection on full length gamma-c clade genes.

148 This clade has been responsible for outbreaks of urethritis i

149 One clade has replaced others at several sites, and rates of

150 bic ciliates, all studied species of the APM clade host symbionts, which we propose to be a significa

151 South Asia clade I was identified as the major genotype, while Sout

152 roin, and (d) predominance of the South Asia clade I with intrinsic resistance to fluconazole and ele

153 tors demonstrated that the differences among clades I-III were already present in their ancestors.

154 PS-a subfamily consists of five well-defined clades I-V, the common ancestor of which probably origin

155 dont teeth found in lizards of the Acrodonta clade (i.e. agamas, chameleons) are symmetrically ankylo

156 of these are unambiguous synapomorphies for clades identified by phylogenetic analysis.

157 sence of normally oligotrophic Synechococcus clade II.

158 a draft genome sequence of an African clade (clade III) strain cultured from the urine of a patient h

159 most C. auris clades, with the exception of clade III.

160 a the transcriptional regulation of upstream clade-III MAP3Ks, particularly MAP3K14.

161 omologs are clustered as a plant-specific TA clade in class I carboxylesterases.

162 h initially uncommon, reports of the African clade in the United States have grown to include a recen

163 pported reciprocally monophyletic mitogenome clades in the cave lion, and an additional third distinc

164 ur species tree analyses recovered four main clades in the genus based on consensus nuclear phylogeni

165 referenced occurrence records to 1) identify clades in the phylogeny that are characterized by either

166 y expanded the known pangenomes of many oral clades, including the enigmatic Saccharibacteria clades

167 The sampled clades incorporate all animals and land plants, encompas

168 nonnodulating species in the nitrogen-fixing clade indicated that the nodulation trait has a shared e

169 clustering of viral sequences into divergent clades, indicating that these genes are virus-specific a

170 Each clade is composed exclusively of either chromosome-encod

171 The mangrove killifish clade is composed of the two only known examples of self

172 es in 50% of cases where the same crAss-like clade is detected in both the mother and the infant, sug

173 origin of phenotypic diversity among higher clades is one of the most fundamental topics in evolutio

174 in the gene SlHAK20 encoding a member of the clade IV HAK/KUP/KT transporters.

175 as the major genotype, while South American clade IV was a minor genotype.

176 red as a member of the Triassic ornithodiran clade Lagerpetidae, expanding the range of this group in

177 logenetically closely related species at the clade level revealed neoplasia rates as low as 3.1% and

178 We discovered rampant expansin gene and clade loss among the three, including a complete absence

179 Among the non-dicot AGO1 clade members in monocots, AGO17 expresses highly in rep

180 with its likely competition with other AGO1 clade members.

181 ules formed by plants of the nitrogen-fixing clade (NFC) are symbiotic organs that function in the ma

182 rs ago whereas the split within the clinical clade occurred ~302 years ago (previous studies showed a

183 he branching of animal isolates and clinical clades occurred ~502 years ago whereas the split within

184 mmon ancestor of mycenoid and the marasmioid clade of Agaricales and was maintained through at least

185 Spiralia is a large, ancient and diverse clade of animals, with a conserved early developmental p

186 ique NAC transcription factor within the VND clade of Arabidopsis NUT1 localizes to the developing pr

187 tudy we mine metagenomic data and identify a clade of Caudovirales that encodes the beta and beta' su

188 o the first member of a predominantly marine clade of GH110 enzymes while also illuminating the struc

189 on caused range contraction, restricting one clade of Heterometrinae to refugia in southern India (th

190 in cultured SAR11, the ocean's most abundant clade of heterotrophic bacteria(16,17).

191 belonging to a functionally uncharacterized clade of KCS enzymes involved in cuticular wax biosynthe

192 tures uniquely with some megalosauroids (the clade of megalosaurids + spinosaurids + piatnitzkysaurid

193 logenomic studies have generally recovered a clade of Monoplacophora + Cephalopoda.

194 hereas earlier molecular studies supported a clade of Monoplacophora + Polyplacophora (Serialia) and

195 st show the origin of Andean Leishmania as a clade of near-clonal lineages that diverged from admixed

196 ther with the class Armophorea, form a major clade of obligate anaerobes (APM ciliates) within the Sp

197 The rapid evolution of a trait in a clade of organisms can be explained by the sustained act

198 Our study characterizes a clade of RNAP-encoding Caudovirales and suggests the anc

199 bligately unattached to substrates) within a clade of rock-dwelling, sexually reproducing species in

200 A sub-clade of the Cameroon genotype, which emerged ~22 years

201 A sub-clade of the Ghana genotype that arose approximately 30

202 O in mycorrhizal roots and its presence in a clade of the MLO family that is specific to mycorrhizal-

203 nd the sequences reveal a now-extinct sister clade of the modern variola viruses that were in circula

204 ato and Arabidopsis shows expansions in each clade of the TPS gene family in each lineage (and inferr

205 conserved among Chlorophyceae and the Ulvale clade of Ulvophyceae at the 5' end of triphosphorylated

206 These enzymes are encoded by ismA genes in a clade of uncultured microorganisms, which are prevalent

207 phyletic and nested within a closely related clade of western North American haplotypes, suggesting a

208 At least five and up to eight distinct clades of ABC ATPases are reconstructed as being present

209 lved independently in many distantly related clades of animals.

210 Most genera from the exclusive clades of Arg-containing NrfA proteins are also represen

211 tination inhibition titers against different clades of H1N1 subtype influenza A viruses.

212 lls and inhibited Nef alleles from divergent clades of HIV and simian immunodeficiency virus, includi

213 f recombinant gp120 proteins from four major clades of HIV-1 (A, B, C, and AE), produced either as re

214 For individual clades of interest, it reconstructs strain-level phyloge

215 bundant hgcAB sequences were associated with clades of Methanomicrobia, sulfate-reducing Deltaproteob

216 ABC ATPases form one of the largest clades of P-loop NTPase fold enzymes that catalyze ATP-h

217 important source of human infection by some clades of Salmonella Enteritidis ST11 in East Africa, bu

218 pothesized to be a giant marine reptile, all clades of which have previously been proposed to show li

219 ot clades") or an underrepresentation ("cold clades") of antiinfective compounds and 2) assess the sp

220 erized by either an overrepresentation ("hot clades") or an underrepresentation ("cold clades") of an

221 nd in its entirety in any other C. difficile clade, or indeed, in any other microbial genome; however

222 other but distantly related to other African clade organisms recovered in the United States or elsewh

223 Early members of the dinosaur-pterosaur clade Ornithodira are very rare in the fossil record, ob

224 otential synapomorphies for various hominoid clades, our results confirm the relevance of vestibular

225 ingbird species in eight of nine hummingbird clades over a sixfold size range of body size (2.7-17.5

226 oteins (activation pH 5.5-5.9) than pandemic clade (pH 5.0-5.5).

227 ndwanatheria is one of the most poorly known clades, previously represented by only a single cranium

228 ematically increases signal diversity during clade radiation remains debated.

229 the African isolates form a single disparate clade, rather than two separate clades, which is more in

230 ported AAA unfoldases, including the meiotic clade relative Vps4, and supports a model in which spast

231 CLADES relies on a system of genetic switches to activat

232 results support the hypothesis of an active clade replacement, implying that direct competition with

233 dicate that direct repression of WOX9 by WUS clade repressor STF/LAM1 is required for correct blade a

234 ster at the base of gnathostome GHR and PRLR clades, respectively.

235 lination for plants) generally increase that clade's diversification rates.

236 diversification rates, accounting for among-clade sampling biases.

237 to, firstly, establish the variation of this clade, secondly, relate stress and shape variables, and

238 sms involving R1 oligomerization belong to a clade separated from the two subclasses forming R1-R2 oc

239 We discovered a phylogenetic clade shared between bryophytes and higher land plants o

240 uence comparisons showed that aside from one clade shared with other monocot plants, the Poaceae TPS-

241 state reconstructions across this ant-plant clade show that a full-sun farming strategy has existed

242 ity among northern mastodons than in endemic clades south of the continental ice sheets.

243 ogenies from among the closest species using clade-specific maximally informative markers.

244 Clade-specific ontogenetic differences in skull organiza

245 g that life history characteristics of these clades structure diversity differently across space and

246 ption to the paradigm that, in the CY spigot clade, such spigots are restricted to female spiders.

247 ularia expansins failed to branch within any clade, suggesting that they may be the result of neofunc

248 sonnei infections was attributed to a novel clade that emerged from a Central Asia sublineage exhibi

249 ological diversity within Vombatiformes, the clade that includes wombats (Vombatidae), koalas (Phasco

250 f other sauropsid species in a gamma (gamma) clade that predates the divergence of different avian li

251 te Phyla Radiation, forming six monophyletic clades that distinctly associate with either plaque or t

252 hly 60% of oak diversity traces back to four clades that experienced increases in net diversification

253 nmar isolates group in two distantly related clades that reside in a more ancestral Asian clade with

254 opes on H5 hemagglutinin (HA) from different clades that were associated with antibody recognition an

255 /AFB proteins representing three of the four clades that were established prior to angiosperm radiati

256 (76%) of the Brazilian strains fell in three clades that were introduced from Europe between 22 Febru

257 dentified another S. capitis subclade (alpha clade) that emerged independently, showing parallel evol

258 highlight a third and deep branching diderm clade, the Limnochordia, strengthening the hypothesis of

259 e framework, we conclude that in the hominin clade there were probably no hard-food specialists.

260 CLADES therefore offers an innovative strategy for makin

261 pability of the members of the Saltatorellus clade to divide by binary fission as well as budding, we

262 rong Yangshan virus assemblage is the sister clade to the expansive class Alsuviricetes and consists

263 es in the annelid Capitella teleta, a sister clade to the mollusks, suggests that the dorsal-ventral

264 odontinae and Trichogeninae forming a sister clade to the remaining trichomycterids and the intrafami

265 The intermediate clade transcriptional activator WOX9 functions together

266 ator WOX9 functions together with the modern clade transcriptional repressor WOX genes in embryogenes

267 aining trichomycterids and the intrafamilial clade TSVSG (Tridentinae-Stegophilinae-Vandelliinae-Sarc

268 stablished G. vaginalis species-specific and clade-typing polymerase chain reaction assays.

269 T. autotrophicus strain EF1 from the SUP05 clade under high DO (22 muM), anoxic, and low DO (3.8 mu

270 al pathotype, the nonencapsulated urethritis clade (US_NmUC).

271 B/Victoria viruses of the globally emerging clade V1A.3 were antigenically drifted from the strain i

272 fluenza viruses isolated in 2009-2016, gamma-clade viruses had less stable HA proteins (activation pH

273 Gamma-clade viruses replicated to higher levels in mammalian c

274 ants reduced viral replicative capacity in C clade viruses, particularly the V280A variant (P < 0.000

275 signal (NLS)-bearing paralogues in the NMCP1-clade was discounted based on recovery of a crwn4-2 miss

276 FHbp ID 896 of the clade was recognized by antibodies elicited by FHbp in M

277 One of these clades was restricted to Beringia while the other was pr

278 The geographic distribution of VZV clades was taken as evidence that VZV migrated out of Af

279 Specific clades were associated with differing behavioral practic

280 ch adaptations is present in the haramiyidan clade, which differed from contemporary mammaliaforms in

281 le disparate clade, rather than two separate clades, which is more in accord with the known history o

282 me aptamers inhibit RT from only a few viral clades, while others show broad-spectrum inhibition.

283 HA gene has resulted in several phylogenetic clades, while reassortment with other avian influenza vi

284 and strength of convergence in a marine fish clade with a worldwide distribution (snappers and fusili

285 bunits further suggests they form a distinct clade with common evolutionary origin.

286 clades that reside in a more ancestral Asian clade with high amounts of genetic diversity.

287 serve to block a variety of different viral clades with additional benefits for their anti-inflammat

288 the relative number of descendants in sister clades with and without a specific allele.

289 In the two main clades with differential diversity in L1, NADC30-like PR

290 t species-rich regions on Earth and identify clades with naturally occurring substances potentially s

291 phylogenomic analyses group tongue-specific clades with other host-associated TM7 genomes.

292 all recognized GSSCP morphotypes and between clades with shared morphotypes.

293 cross the flora of Java, we identify 26 "hot clades" with plant species providing a high probability

294 s activity is conserved across most C. auris clades, with the exception of clade III.

295 FGE profile form a distinct phylogenetic sub-clade within S.

296 More recently, a distinct clade within this lineage has expanded to cause urethrit

297 ther split of clinical isolates into two sub-clades within clade A.

298 Several clades within the Yangshan assemblage independently evol

299 st genes belong to an avian-specific gamma-c clade, within which sequences cluster by species, sugges

300 d and one of the youngest occurrences of the clade worldwide.