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1 ght-handed spiral to match the spiral of the clamp loader.
2 nded DNA-binding protein (SSB), binds to the clamp loader.
3 9-1-1) clamp complex together with Rad17-RFC clamp loader.
4 ded onto DNA by a replication factor C (RFC) clamp loader.
5 clamp, and, replication factor C (RFC), the clamp loader.
6 ubunit to the function of the M. acetivorans clamp loader.
7 physically or genetically with a replication clamp loader.
8 clamp loading activity of the M. acetivorans clamp loader.
9 previously crystallized extended form of the clamp loader.
10 a highly asymmetric and extended form of the clamp loader.
11 conformation seen earlier for the bacterial clamp loader.
12 n conformation to be assembled onto DNA by a clamp loader.
13 t PCNA loading or unloading activity of each clamp loader.
14 Pase active subunits of the Escherichia coli clamp loader.
15 C-C serves as a critical swivel point in the clamp loader.
16 aces of the delta and delta' subunits of the clamp-loader.
17 the mechanism of eukaryotic and prokaryotic clamp loaders.
21 lize a fundamentally different mechanism for clamp loader activation than do these other organisms.
23 rystal structure, suggesting that eukaryotic clamp loaders adopt a similar autoinhibited state early
24 is subunit initiates RFC activation, and the clamp loader adopts a spiral conformation that stabilize
25 d possibly serves as a scaffold on which the clamp loader adopts the appropriate conformation for DNA
28 tion of the FRET pair in the presence of the clamp loader and ATP may be ascribed to either further o
30 ysis, the Rad1731 clamp is released from the clamp loader and can slide across more than 1 kb of dupl
31 interaction between the E.coli gamma complex clamp loader and DNA using UV-induced protein-DNA cross-
32 g of the multistep mechanism of a eukaryotic clamp loader and furthermore facilitates comparative ana
33 The switch requires the tau subunit of the clamp loader and is regulated by different DNA structure
35 fic interactions between S. solfataricus RFC clamp loader and PCNA permit us to superimpose our data
37 re performed to test for dissociation of the clamp loader and primase from an active replisome in vit
38 ally similar to the replication factors, RFC clamp loader and proliferating cell nuclear antigen poly
41 merase, (3) clamp binding to DNA followed by clamp loader and then polymerase, and (4) polymerase bin
43 s and clamps coordinate their actions with a clamp loader and yet other proteins to form a replisome
44 aB by a mechanism akin to that of polymerase clamp loaders and indicate that bacterial replicative he
46 presence of primase, helicase, Pol III core, clamp loader, and beta-clamp initiates DNA synthesis on
47 tion between replication factor C (RFC), the clamp loader, and DNA ligase I in human cell extracts.
48 eterodimer interacted normally with the DnaX clamp loader, and was loaded onto DNA slightly more effi
49 unit of the hRad17-RFC cell cycle checkpoint clamp loader, and with each of the subunits of its DNA s
51 ia coli, Saccharomyces cerevisiae, and human clamp loaders, and the two protein Pyrococcus furiosus a
52 sus and Methanobacterium thermoautotrophicum clamp loaders, and thus far the site(s) responsible for
60 Therefore, this work identifies the DNAP III clamp loader as a new target for inhibition of bacterial
61 ring interactions of the clamp with the DnaX clamp loader, as well as the replicative DNA polymerase,
63 richia coli DNA polymerase III gamma complex clamp loader assembles the ring-shaped beta sliding clam
64 ntameric tau3-delta-delta' Bacillus subtilis clamp-loader assembles via multiple pathways, which diff
65 a conformation before PCNA opening, with the clamp loader ATPase modules forming an overtwisted spira
67 onserved both in bacterial and in eukaryotic clamp loader ATPases appears to play a critical role.
69 ow that four ATP ligands must bind to the T4 clamp loader before the loader can be fully "activated"
72 amps that have transiently opened or whether clamp loaders bind closed clamps and actively open clamp
73 x binding to DNA followed by polymerase, (2) clamp loader binding to DNA followed by clamp and then p
74 ree-step 'bind-open-lock' model in which the clamp loader binds a closed clamp, the clamp opens, and
79 ot due to altered interactions with the DnaX clamp loader, but rather was the result of impaired beta
80 osed of either form of DnaX are fully active clamp loaders, but tau confers important replicase funct
81 ovides a unique perspective into the E. coli clamp loader by providing a measure of the relative timi
82 here that the Escherichia coli gamma complex clamp loader can load the beta clamp onto a 5' primed si
84 defect was measured with a mutant RFC-Rad24 clamp loader carrying a rfc4K55R ATP-binding mutation, w
87 tudies, charged/polar amino acids inside the clamp loader chamber interact with the double-stranded (
88 We reveal an additional role for the DnaX clamp loader: chaperoning of the replicative polymerase
90 on identifies MgsA enzymes as members of the clamp loader clade of AAA+ proteins, but structural info
92 ation of a functional holoenzyme on DNA: (1) clamp loader-clamp complex binding to DNA followed by po
93 ent conformational rearrangements 'lock' the clamp loader-clamp complex in a stable open conformation
94 neither facilitates the formation of an open clamp loader-clamp complex in experiments presented here
95 o determine whether the formation of an open clamp loader-clamp complex is dependent on spontaneous c
100 y new crystal structures of bacteriophage T4 clamp loader-clamp-DNA complexes that capture two distin
101 structural work has been carried out on the clamp-loader-clamp-DNA polymerase alpha interactions in
102 ains of the delta and delta' subunits of the clamp loader close to each other in the inactive state,
103 riants stimulated the ATPase function of the clamp loader, complemented cell growth of a temperature-
105 ication complex, initiation factors, and the clamp loader complex (replication factor C) remained tet
106 rt the crystal structure of the five-protein clamp loader complex (replication factor-C, RFC) of the
107 lements are involved, the tau subunit of the clamp loader complex and an OB domain within the DNA pol
108 ntrast, the ATPase rate profile of the clamp-clamp loader complex exhibits a marked peak at an input
109 nt structures for the ATP-bound state of the clamp loader complex from bacteriophage T4, bound to an
110 The crystal structure of the pentameric clamp loader complex from Escherichia coli (the gamma co
115 stigate the structural changes in the E.coli clamp loader complex that result from ATP-binding and in
116 and are loaded onto DNA by an ATP-dependent clamp loader complex that ruptures the interface between
118 y proteins: gp45 (sliding clamp), gp44/gp62 (clamp loader complex), gp55 (late sigma-factor), and gp3
119 e-dimensional models of one form of the full clamp loader complex, gamma3deltadelta'psichi (254 kDa).
120 sembly of this holoenzyme, the seven-subunit clamp loader complex, is responsible for loading the sli
121 clamp is loaded onto DNA and unloaded by the clamp loader complex, the delta subunit of which by itse
122 t with the spiral interaction surface of the clamp loader complex, we have performed molecular dynami
123 Rad17 is a subunit of the Rad9-Hus1-Rad1 clamp loader complex, which is required for Chk1 activat
124 s need to be opened and loaded onto DNA by a clamp loader complex-a process, which involves disruptio
128 i heterodimer serves as a bridge between the clamp-loader complex and the single-stranded DNA-binding
129 e describe crystal structures of the E. coli clamp-loader complex bound to the ATP analog ATPgammaS (
134 he replicative helicase, DNA polymerase, and clamp loader complexes are consistent with the presence
136 mps, which are loaded onto DNA by pentameric clamp loader complexes belonging to the AAA+ family of a
137 there may be a conserved need for alternate clamp loader complexes during DNA damaging conditions.
144 it and one large subunit, the M. acetivorans clamp loader comprises two similar small subunits (M. ac
145 ither yeast RFC itself nor two other related clamp loaders, containing either Rad24 or Elg1, catalyze
147 previously and led to the proposal that the clamp-loader cycles between an inactive state, in which
149 ggest that the more open form of the E. coli clamp loader described earlier and in the present work c
150 interplay between gp32, primase, clamp, and clamp loader dictates the rate and efficiency of primer
151 obacter viability, and identifies a role for clamp loader diversity in responding to DNA damage.
152 dy-state FRET measurements, we show that the clamp loader-DNA complex is functional in clamp loading.
154 ition of nucleotide and clamp to the labeled clamp loader does not appreciably alter these FRET dista
155 uggested that the similarity between the two clamp loaders does not translate into the complete conse
156 targeting the delta subunit of the DNAP III clamp loader; E. coli mutations conferring gp8 resistanc
157 nitiates a slow conformational change in the clamp loader, enabling it to bind and open PCNA and to b
158 ding to RFC initiates slow activation of the clamp loader, enabling it to open PCNA (at ~2 s(-1)) and
160 i subunit also increases the affinity of the clamp loader for the clamp in assays in which ATPgammaS
161 not appear to be due to DNA binding, as the clamp loader forms an avid complex with beta at a 5' sit
165 insights into the evolution of more complex clamp loaders from simpler ones as more complex organism
166 tearothermophilus and the tau subunit of the clamp-loader from Bacillus subtilis we show that changes
167 ignal indicated that the dissociation of the clamp-loader from this complex occurred after guiding th
171 asuring the activities of three forms of the clamp loader, gamma(3)deltadelta', gamma(3)deltadelta'ps
172 sed assay in which the E. coli gamma complex clamp loader (gamma3deltadelta'chipsi) was labeled with
173 a clamp loading pathway that utilizes the T4 clamp loader (gp44/62) and ATP hydrolysis initially to f
174 ture of the nucleotide-free Escherichia coli clamp loader had been determined previously and led to t
175 ot impair clamp loading activity, any mutant clamp loader harboring a mutation in MacRFCS1 was devoid
176 Crystal structures of an Escherichia coli clamp loader have provided insight into the mechanism by
178 alpha interactions in Escherichia coli, the clamp-loader-helicase interaction is poorly understood b
182 orresponds to a stable inactive state of the clamp loader in which the ATPase domains are prevented f
183 tic analyses further support the role of the clamp-loader in bacteriophage T4 as a catalyst which loa
184 The eukaryotic replication factor C (RFC) clamp loader is an AAA+ spiral-shaped heteropentamer tha
187 nterestingly, the chi subunit of the E. coli clamp loader is not required for SSB to inhibit clamp lo
188 tion between DNA ligase I and the checkpoint clamp loader is regulated by post-translational modifica
193 remarkable progress in our understanding of clamp loaders, it is still unclear how recognition of pr
194 h budding yeast showed that the 'alternative clamp loader' known as Ctf18-RFC acts by an unknown mech
196 be suppressed by overexpression of the PCNA clamp loader large subunit, Rfc1p, and by inactivation o
198 sion and signaling mechanisms as the gp44/62 clamp loader levels changed but was insensitive to chang
204 ge subunit) suggests that the M. acetivorans clamp loader may be an intermediate form in the archaeal
205 clamp loader, suggesting that the S. aureus clamp loader may have difficulty ejecting from heterolog
206 has been done studying the sliding clamp and clamp loader mechanism, kinetic analysis of the events f
209 the RFC structure, provides clues regarding clamp-loader mechanisms--suggesting, for example, that R
211 d resealed at primer-template junctions by a clamp loader molecular machine, replication factor C (RF
213 neither the function of the Rad24 checkpoint-clamp loader nor the Rad6-Rad18-mediated ubiquitination
215 r C (RFC) is a heteropentameric AAA+ protein clamp loader of the proliferating cell nuclear antigen (
218 e phage T4 sliding clamp gp45 by the gp44/62 clamp loader onto DNA to form the holoenzyme and their d
219 o each other in the inactive state, with the clamp loader opening in a crab-claw-like fashion upon AT
222 e/function of the Methanosarcina acetivorans clamp loader or replication factor C (RFC) homolog.
225 open conformation, and in the second stage, clamp loaders place the open clamps around DNA so that t
226 To form a productive holoenzyme complex, clamp loader protein gp44/62 is required for the loading
227 Due to the closed ring shape of the clamp, a clamp loader protein, belonging to the AAA+ class of ATP
229 r results were obtained with antisera to the clamp loader proteins Rfc3 and Rfc4, and to PCNA, i.e. L
230 ame site as that of the delta-subunit of the clamp loader, providing the basis for a switch between t
231 as Rad24, members of the putative checkpoint clamp loader (Rad24) and sliding clamp (Rad17, Mec3) com
232 actor C (RFC), and the DNA damage checkpoint clamp loader, Rad24-RFC, using two separate fluorescence
234 s led to the hypothesis that a similar clamp-clamp loader relationship exists for the DNA damage resp
235 nd simple modeling studies indicate that the clamp loader releases DNA prior to the clamp and that DN
238 s proliferating cell nuclear antigen and the clamp loader replication factor C facilitated DNA synthe
239 with the proliferating cell nuclear antigen clamp loader replication factor C, DNA polymerase delta,
241 l structure of a nucleotide-bound eukaryotic clamp loader [replication factor C (RFC)] revealed a dif
242 A onto duplex DNA requires the activity of a clamp-loader [replication factor C (RFC)] complex and th
243 and opening by the Saccharomyces cerevisiae clamp loader, replication factor C (RFC), and the DNA da
244 unit-subunit interfaces by the ATP-dependent clamp loader, Replication Factor C, whose clamp-interact
245 omyces cerevisiae replication factor C (RFC) clamp loader, respectively, and assessed the impact on m
246 proposed to mirror those of the replication clamp loader RFC and the sliding clamp proliferating cel
247 protein RPA, the sliding clamp PCNA, and the clamp loader RFC slightly increase the processivity of y
248 We have purified the putative checkpoint clamp loader RFC-Rad24 and the putative clamp Rad1731 fr
249 te that the replication factor C (RFC)-CTF18 clamp loader (RFC(CTF18)) controls the velocity, spacing
250 nce assays to study the clamp (PCNA) and the clamp loader (RFC) from the mesophilic archaeon Methanos
253 R ATP-binding mutation, whereas the rfc4K55E clamp loader showed partial loading activity, in agreeme
255 We find that the replication factor C (RFC) clamp loader specifically inhibits Pol epsilon on the la
256 scherichia coli and Saccharomyces cerevisiae clamp loader specificity toward 3'DNA, fluorescent beta
257 nct conformations of the ATPase domains, the clamp loader spiral is symmetric and is set up to trigge
258 mble models of psichi-SSB4 (108 kDa) and the clamp loader-SSB4 (340 kDa) consistent with IM data.
259 asured collision cross-section (~10%) of the clamp loader-SSB4 complex upon DNA binding suggests larg
264 The gamma complex structure shows that the clamp loader subunits are arranged as a circular heterop
265 the clamp can easily match the spiraling of clamp loader subunits, a feature that is intrinsic to th
267 In particular, studies of sliding clamps and clamp-loader subunits elucidate the mechanisms of replis
268 mpare the constraints imposed on various RFC clamp-loader subunits, each of which performs a related
270 nt on the presence of the chi subunit of the clamp loader, suggesting recruitment of Pol III HE at si
271 en they are loaded onto DNA by the S. aureus clamp loader, suggesting that the S. aureus clamp loader
272 selectivity to differing degrees for the two clamp loaders, suggesting variations in the mechanism by
273 that ATP utilization by the checkpoint clamp/clamp loader system is effectively different from that b
275 has been suggested that clamp opening by the clamp loader takes advantage of spontaneous opening-clos
278 tion in the C-terminal domain of the E. coli clamp loader that contributes to DNA binding and helps d
280 reminiscent of the minimal Escherichia coli clamp loader that exists in space as three gamma-subunit
283 e loaded onto primer-template DNA (ptDNA) by clamp loaders that open and close clamps around ptDNA in
285 DnaB is attached to the tau subunit of the clamp-loader that loads the beta clamp and interconnects
286 ase activity drives interactions between the clamp loader, the clamp, and the ptDNA, leading to topol
287 ase, the Pol epsilon DNA polymerase, the RFC clamp loader, the PCNA sliding clamp, and the RPA single
288 de that gp59 acts in a manner similar to the clamp loader to ensure proper assembly of the replisome
290 the psi protein, essential for coupling the clamp loader to single-stranded DNA-binding protein (SSB
291 ighlight a common role for SSBs in directing clamp loaders to 3'DNA, as well as uncover nuances in th
294 s, including DnaA, helicase, primase and the clamp loader, TrfA interaction with the beta-clamp contr
296 ow how the different subunits of an archaeal clamp loader use ATP binding and hydrolysis in distinct
298 (PCNA, clamp) and replication factor C (RFC, clamp loader), we have examined the assembly of the RFC.
299 e relatedness of the archaeal and eukaryotic clamp loaders (which are made up of four similar small s