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1 microbiomes showed increased Bacteroidia and Clostridia.
2 way for pentose assimilation in cellulolytic clostridia.
3 ad by the strictly anaerobic Bacteroides and Clostridia.
4 a derived cellulolytic organism in the class Clostridia.
5 chnique never used before with solventogenic clostridia.
6 vailable to date on pectate lyase genes from Clostridia.
7 y for purine fermentation in the purinolytic clostridia.
8 both acid formation and solvent formation by clostridia.
9  with members of the classes Bacteroidia and Clostridia.
10 iral genera, such as viruses associated with Clostridia.
11 e, an amino acid and carbohydrate-fermenting Clostridia.
12 ndant and physiologically important class of Clostridia.
13 easier to classify at the species level than clostridia.
14 ovibrionaceae and lower abundance of several Clostridia.
15  promoted butyrate production by co-cultured Clostridia.
16 eneficial taxa, including butyrate-producing Clostridia.
17 ding with an enrichment of endospore-forming Clostridia.
18 o antagonized the colonization of beneficial Clostridia.
19 ong enrichment toward the anaerobic order of Clostridia.
20 cellulosome-localized protease inhibitors in Clostridia.
21 nce factors of various species of pathogenic Clostridia.
22 le in maintaining NADH/NAD(+) homeostasis in clostridia.
23  Desulfovibrionaceae and decrease in several Clostridia.
24 llulosic biomass degradation in cellulolytic Clostridia.
25 tive production of p-cresol from tyrosine in clostridia.
26 stly highly conserved in the Bacilli and the Clostridia.
27 -Megasphaera-Sporomusa group back within the Clostridia.
28 ower MFC anode communities were dominated by Clostridia.
29  which are conserved among other bacilli and clostridia.
30 of sporulation-specific genes in Bacilli and Clostridia.
31 , the highest detected number in cluster III clostridia.
32 t-related amidases almost exclusively target Clostridia.
33 ust of Firmicutes (70%) at the phylum level, Clostridia (44%) at the Class level, and Clostridiales a
34 re highly diverse and primarily dominated by Clostridia (48.5%), Bacilli (27.9%), and beta-Proteobact
35 residues), is conserved throughout the class Clostridia, a distribution inconsistent with putative ba
36 with shifts to predominantly Bacteroidia and Clostridia, a significant increase in Microbiome Health
37         Unlike the Gram-positive Bacilli and Clostridia, A. longum spores retain their outer spore me
38                            Butyrate restored Clostridia abundance by stimulating epithelial peroxisom
39 hat increased Enterobacteriaceae and reduced Clostridia abundance distinguish the fecal microbiota of
40 ing sorbitol intolerance in mice by reducing Clostridia abundance, which impaired microbial sorbitol
41 oducer Anaerostipes caccae restored a normal Clostridia abundance, which protected mice against sorbi
42 nst sorbitol intolerance but did not restore Clostridia abundance.
43 dividual genomes within Firmicutes (Bacilli, Clostridia), Actinobacteria, and y-proteobacteria.
44  gamma-Proteobacteria, delta-Proteobacteria, Clostridia, Actinobacteria, Deinococcus-Thermus species
45  in Science, Kim et al. (2017) revealed that Clostridia added to mouse infant gut microbiota are suff
46 escribed previously from different groups of clostridia, along with differences in flanking sequences
47  selected strains of high butyrate-producing Clostridia also decreased GVHD.
48 ; 38% of Bacilli species, followed by 14% of Clostridia and 2.7% of other Firmicutes species, have P4
49 s (BoNTs) are produced by various species of clostridia and are potent neurotoxins which cause the di
50 ng seven bacterial classes with Bacteroidia, Clostridia and Bacilli dominating the microbiota.
51 ve DdlR targets in other bacteria of classes Clostridia and Bacilli, indicating a similar mode of reg
52                  Diverse families within the Clostridia and Bacteroidetes taxa discriminated human wa
53                        Bacterial taxa within Clostridia and Firmicutes could be studied as probiotic
54 ars (PERMANOVA P = .047), with enrichment of Clostridia and Firmicutes in the infant gut microbiome o
55                                              Clostridia and Fusobacteria, widely pathogenic to other
56  Inappropriate immunoglobulin A targeting of Clostridia and increased Desulfovibrio antagonized the c
57 ked to fecal signatures of Bacteroidetes and Clostridia and increases glutamate/glutamine and hypoxan
58 nderstanding of sporulation in solventogenic clostridia and its relationship to solvent formation and
59 ion has been detected in anaerobes, first in clostridia and later in acetogens and methanogens.
60 e system to become active against pathogenic Clostridia and multidrug-resistant strains.
61 ram-positive bacteria (Firmicutes), Bacilli, Clostridia and Negativicutes, include numerous members t
62 ae and Lactobacillus ; and increases in some Clostridia and opportunistic taxa) in many cohorts that
63 ude of regulatory function that CaCO3 has in clostridia and provides detailed insights into degenerat
64 e divergence of the branches leading to the 'Clostridia and relatives' and the remaining low-G+C Gram
65 Bacillus and Staphylococcus rather than the 'Clostridia and relatives' as suggested by the sequences
66 sted almost entirely of sequences similar to Clostridia and showed a decrease in bacterial abundance
67 similarities among the F1 subunits from both clostridia and the beta subunit of F1 from E. coli.
68 heifers, and we show that it is dominated by Clostridia and/or Bacilli but also harbors Bacteroidetes
69 iotic-mediated depletion of anaerobes (e.g., Clostridia) and associated decreases in butyrate result
70  deep groundwater, phylum Chloroflexi, class Clostridia, and candidate division OD1 were the major ta
71  increased abundance of Clusters IV and XIVa Clostridia, and decreased abundance of Bacilli and Prote
72 icrobes, including staphylococci, listeriae, clostridia, and enterococci.
73 ted declines in the phylum Firmicutes, class Clostridia, and order Clostridiales This ancillary analy
74 es in selective pressure between eukaryotes, Clostridia, and other bacteria, our results are consiste
75 re seen for Proteobacteria, Deferribacteres, Clostridia, and others; however, changes in Enterobacter
76              Anaerobic bacteria of the genus Clostridia are a major threat to human and animal health
77                                              Clostridia are anaerobic Firmicutes producing a large ar
78                                Solventogenic clostridia are strictly anaerobic, endospore forming bac
79               Spores produced by bacilli and clostridia are surrounded by a multilayered protein shel
80       It has recently been proposed that the Clostridia are the oldest Eubacterial class and the ubiq
81 cant enrichment of individual species within Clostridia as well as particular functional pathways in
82 indicate that C. difficile, and likely other clostridia, assemble a distinct divisome that therefore
83                            Colonization with clostridia, at the age of 5 and 13 weeks was also associ
84 s was executed and COGs were mostly found in Clostridia, Bacilli (Firmicutes), and in alpha and beta
85 iverse human gut microbial classes including Clostridia, Bacilli, and Coriobacteriia, with the capaci
86 y in males, including species within classes Clostridia, Bacilli, and Mahellia within Firmicutes.
87 naerobic species affiliated with the classes Clostridia, Bacilli, Gammaproteobacteria, Epsilonproteob
88 ated with genus MGYG-HGUT-02719 within class Clostridia (beta = -2.26 to -0.09 per 1 drink/d increase
89 10, Oscillibacter, and Gemmiger within class Clostridia (beta = -3.88 to -2.69), whereas positively a
90                       Treatment of SMCs with Clostridia botulinum C3 exoenzyme, which inhibits RhoA a
91          Colonization of germ-free mice with Clostridia, but not Desulfovibrio, down-regulated genes
92 rease in Desulfovibrionaceae and decrease in Clostridia (Butyrivibrio, Coprococcus 2, Lachnospiraceae
93 cteroidales, with an unexpected finding that Clostridia can outperform Bacteroidales at foraging fuco
94                  Lysine 2,3-aminomutase from Clostridia catalyzes the interconversion of L-lysine and
95 the healthy twins were largely taxa from the Clostridia class.
96  composition with decreased Bacteroidia- and Clostridia-class bacteria, whereas after treatment, resp
97 icute phylum, which includes the Bacilli and Clostridia classes, are their ability to form endospores
98 s that infect members of the Bacteroidia and Clostridia classes.
99  microbiota (increases relative abundance of Clostridia clusters IV and XIVa) and a concomitant incre
100 nally, how does the germination of spores of clostridia compare with that of spores of bacilli?
101 llergy-protective capacity is conferred by a Clostridia-containing microbiota.
102 equenced to date, including actinomycetales, clostridia, corynebacteria, and streptococci.
103 001) populations but significantly decreased clostridia counts (P < 0.001).
104 roides (P = .02) increased, whereas rates of clostridia decreased (P < .001).
105 and recent efforts to metabolically engineer clostridia demonstrate their potential for biofuel and b
106                                              Clostridia depletion and aerobic Salmonella expansion we
107  matched healthy subjects and identified two Clostridia-derived BGCs that are significantly associate
108              Streptomycin treatment depleted Clostridia-derived butyrate to increase epithelial oxyge
109 acillus subtilis, and most other bacilli and clostridia, DHDPA is oxidized to DPA by the products of
110  the risk of hospital-acquired pneumonia and Clostridia difficile infection.
111             The genomes of most cellulolytic clostridia do not contain genes annotated as transaldola
112              Depletion of butyrate-producing Clostridia, either through oral antibiotic treatment or
113 veal that F-ENA are conserved in Bacilli and Clostridia, featuring head-neck domains with beta-barrel
114      By leveraging pathways in solventogenic clostridia for co-producing acyl-CoAs, acids and alcohol
115  (containing the type I reaction center) and Clostridia (forming heat-resistant endospores).
116 tment depleted commensal, butyrate-producing Clostridia from the mouse intestinal lumen, leading to d
117                                  Bacilli and Clostridia generate dormant, highly resistant cells, cal
118  was evidenced in seven species belonging to Clostridia, Halothermothrix, and Tepidanaerobacter.
119 indicates that the PP(i)-PFK of cellulolytic clostridia has evolved the use of S7P.
120          The increased relative abundance of Clostridia in all three early MS cohorts compared to con
121               Analysis of the genomes of the clostridia in Cluster I, including the pathogens Clostri
122  substantial differences between bacilli and clostridia in the engulfment and spore coat formation st
123                                    The class Clostridia in the phylum Firmicutes (formerly low-G+C Gr
124 se degradation pathways encoded by commensal Clostridia, in addition to glycoside hydrolases putative
125 ion of immune-modulating microbiota, such as Clostridia, in SL/vulnerable rats.
126            The reconstructed Rex regulons in clostridia included the genes involved in fermentation,
127 ith a higher abundance of species from class Clostridia, including [Eubacterium] eligens, Butyrivibri
128 josui, they seem to be typical of mesophilic clostridia, indicating that the large gene clusters may
129 rst step in the establishment of Bacilli and Clostridia infections, we analyzed the requirements for
130 asses from Bacilli to Gammaproteobacteria to Clostridia, interrupted by abrupt population changes.
131                               Central to all clostridia is the orchestration of endospore formation (
132 grafted with a defined community of 17 human Clostridia isolates, S. Typhimurium infection inhibited
133  mice engrafted with a community of 17 human Clostridia isolates, S. Typhimurium virulence factors tr
134 biquity of TFP in this class suggests that a Clostridia-like ancestor possessed TFP, which evolved in
135 had lower abundances of members of the class Clostridia, lower counts of butyrate producers, and lowe
136 , carbohydrate metabolism by other commensal Clostridia may prevent CDI by inhibiting C. difficile pr
137                             FAAs produced by Clostridia may serve as a mechanism to modulate their ho
138 range: 0.8 compared with 4.3; P = 0.035) and clostridia (median: 10.4% and 3.7%; interquartile range:
139  microbial transcription (for example, among clostridia), metabolite pools (acylcarnitines, bile acid
140 the biochemistry of strict anaerobes such as clostridia, methanogens, acetogens, and sulfate-reducing
141           These findings suggest that BCD in clostridia might interact with the electron transfer fla
142 th Negativicutes (p=0.0013) and the combined Clostridia-Negativicutes class (p=0.0051) in infants who
143 thogenic, nontoxigenic, commensal strains of Clostridia on prevention of Clostridioides difficile inf
144 elative abundance of bacteria from the class Clostridia, order Clostridiales, family Ruminococacceae
145 s had significantly higher concentrations of clostridia (P = 0.026) and lower concentrations (P = 0.0
146                                   Histotoxic clostridia produce collagenases responsible for extensiv
147                                          The clostridia produce more protein toxins than any other ba
148 strate how metabolically distinct species of Clostridia protect against or worsen Clostridioides diff
149 a previously unidentified mechanism by which Clostridia regulate innate lymphoid cell function and in
150 nificantly enriched for species in the class Clostridia relative to those of symptomatic patients.
151 idence that for this connection cellulolytic clostridia rely on the sedoheptulose 1,7-bisphosphate (S
152  gut microbiota, specifically a depletion of Clostridia, reprogram host metabolism to perform lactate
153 uired to prevent disease, and replacement of Clostridia rescued obesity.
154 la; PseudoDB for pseudomonads; ClostriDB for clostridia; RhizoDB for Rhizobium and Sinorhizobium; and
155 rarchical fistulous complexes, enriched with clostridia/segmented filamentous bacteria, running under
156 anisolvens and reduced some strains, such as Clostridia sp. Thus, the potentially prebiotic orange ju
157  with a higher abundance of fiber-fermenting Clostridia species in the gut microbiome, consistent wit
158                                              Clostridia species limit oxygen availability in the larg
159 salicylic acid (5-ASA) functionally replaced Clostridia species to restore epithelial hypoxia and col
160           Some healthy diet pattern-enriched Clostridia species were related to more favorable cardio
161 ts of Lactobacillaceae spp and 3 fold higher Clostridia spp in the sow fed group in comparison to mil
162  of IgA binding, in particular to members of Clostridia spp., which is associated with greater severi
163 escribe VE303, an LBP comprising 8 commensal Clostridia strains under development for rCDI, and its e
164 nced to date, including the Actinomycetales, clostridia, streptococci, and corynebacteria.
165                    The abundance of multiple Clostridia taxa correlated with a microbial exposure ind
166 ate the existence of a group of cellulolytic clostridia that belong to the family Ruminococcaceae.
167 lesser-known family (the Veillonellaceae) of Clostridia that form endospores but that are surprisingl
168 like proteins may be a common feature of the clostridia that may represent the ancestral state before
169 um hydroxylase enzymes in several species of clostridia that specialize in the fermentation of purine
170 data, we identified species within the class Clostridia that were associated with day 100 complete re
171 type cell envelopes, was recently moved from Clostridia to a separate class Negativicutes.
172 piraceae and Ruminococcaceae of the class of Clostridia to be associated with high urinary 3-IS level
173 e mechanism: depletion of butyrate-producing Clostridia to elevate epithelial oxygenation, allowing a
174 s of BoNTs, labeled A-G, and toxin-producing clostridia typically only produce one serotype of BoNT.
175 nera (decreased prevalence of Adlercreutzia, Clostridia UCG 014, and Clostridium sensu stricto 1 and
176 stipes, Ruminococcaceae, Eggerthellaceae and Clostridia-UCG-014 having mediatory effect using disease
177           We observed that 6 taxa within the Clostridia vadin BB60 group were enriched in vancomycin-
178 environmentally transmitted bacteria such as Clostridia was lower in CORAL infants compared to previo
179       Expansion of Desulfovibrio and loss of Clostridia were key features associated with obesity in
180 ions such as the classes Sphingobacteria and Clostridia were observed over the entire filter depth.
181 all leachate samples and cluster III and XIV clostridia were the most abundant (1-6% and 1-17% of tot
182 species, with the only exception detected in Clostridia, where the Rex motif deviates in two position
183 tudy adds to the understanding of acetogenic Clostridia, which are of interest for biotechnological p
184 ntly in genomic islands of Actinomycetes and Clostridia, which, together with their association with
185 bacteria, Geobacter, and to a lesser extent, Clostridia, while low-power MFC anode communities were d
186 ich include important pathogenic Bacilli and Clostridia, whose ability to sporulate contributes to th
187         Comparative genomics of cellulolytic clostridia will provide insight into factors that influe

 
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