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1 evelopmental stages that the clustered genes co-regulate.
2 quence, one might expect that they should be co-regulated.
3 er core and spindle pole are independent and co-regulated.
4 ow processes in muscle and myeloid cells are co-regulated.
5 share activity profiles and may therefore be co-regulated.
6 al antisense transcripts (NATs) are possibly co-regulated.
7 ests that clusters of adjacent CpG sites are co-regulated.
8 in polycistronic arrays but not necessarily co-regulated.
9 ntation of the underlying processes that are co-regulated.
10 er transcytosis and paracellular leakage are co-regulated.
11 th correlated expression profiles may not be co-regulated.
12 of genes that are 'functionally' related or co-regulated.
13 grouping together genes that are putatively co-regulated.
14 al processes, including cAMP metabolism, are co-regulated.
15 NBAS act in concert with core NMD factors to co-regulate a large number of endogenous RNA targets.
17 and U2AF65, revealing that JMJD6 and U2AF65 co-regulated a large number of alternative splicing even
18 transcription in MCF7 cells and with TRIM28 co-regulates a set of genes associated with stem cell ma
20 multiple (rather than single) intermixed and co-regulated actions, even though many species' signal t
21 could account for, at least partially, their co-regulated alternative splicing events, suggesting bot
22 d ChIP-seq, we determined that H-NS and LuxR co-regulate and co-occupy 28 promoters driving expressio
25 ses or defining given cell types are usually co-regulated and co-expressed, forming expression networ
26 tal-biased allelic expression are frequently co-regulated and enriched in common biological pathways.
27 Here, we present methods to robustly detect co-regulated and functionally enriched gene communities
29 ion changes over time; such molecules may be co-regulated and thus involved in similar biological pro
30 co-expressed microRNA target genes are often co-regulated, and different groups of target genes of th
33 ries would thus incorporate tissue-specific, co-regulated as well as housekeeping genes based only on
34 t have related functions and are potentially co-regulated, as well as proteins that are associated wi
35 s (i.e. "co-binding changes") can affect the co-regulating associations between TFs (i.e. "rewiring t
37 or components of specific complexes are also co-regulated at the transcriptional level, and share com
38 re we found that miR-19, miR-101 and miR-130 co-regulate ataxin1 levels and that their inhibition enh
39 wo major isoforms of Pfn (Pfn1 and Pfn2) are co-regulated by a common mechanism involving the action
41 r markers of terminal motor neuron fate, are co-regulated by a shared cis-regulatory signature and a
42 genes that form modules that are potentially co-regulated by a small group of transcription factors.
43 ize orthology assignments for pairs of genes co-regulated by bidirectional promoters to map the ances
46 , as a healthy adult cardiac fibroblast gene co-regulated by cardiogenic transcription factors Gata4
47 nar positioning of cortical neurons are also co-regulated by cell type- and layer-specific transcript
49 d that a significant proportion of genes are co-regulated by DHX34, NBAS and core NMD factors in thes
50 and microarray analyses, to identify targets co-regulated by Eyeless and Hedgehog, Decapentaplegic or
51 show that full expression of somitic Fgf10, co-regulated by GLI3, is required for the anteroposterio
52 o our model of how this central NE system is co-regulated by opioids and stress-related peptides.
53 ntrolled by promoters methylated by CcrM and co-regulated by other global cell cycle regulators, demo
58 In addition, ARGs in specific clusters are co-regulated by the cAMP-response element-binding protei
61 angioblasts and the adjacent heart field are co-regulated, by transcription factors previously associ
65 GA prostate tumour RNA-sequencing identifies co-regulated cancer genes associated with 2-oxoglutarate
67 the positioning of microbial genes that are co-regulated, co-expressed or evolutionarily correlated.
68 in shuttling between DNA and RNA ligands to co-regulate COL2A1 expression at the level of transcript
70 found that hypermethylation of MITF and its co-regulated differentiation pathway genes corresponded
72 functions at genes whose transcription they co-regulate during mouse T helper 17 (Th17) cell differe
79 microRNA sponges - they communicate with and co-regulate each other by competing for binding to share
82 10 of its established targets identified as co-regulated 'ECM organisation' genes and miR-22-3p whic
85 ations and orientations within the different co-regulating enhancers; these elements contain either k
87 RGAP2A, a Rho-GTPase-activating protein, can co-regulate excitatory and inhibitory synapse developmen
89 er, the data suggest that the Wld(S) protein co-regulates expression of a consistent subset of genes
90 Mn(II), and antagonized by Fe(II), PerR may co-regulate Fe(II) homeostasis by modulating BsFur level
95 TWAS power over PrediXcan when >=1% cis-SNPs co-regulate gene expression and gene expression heritabi
96 Interdependent binding serves not only to co-regulate gene expression but also to prevent TFs from
98 meiosis-expressed gene 1 (MEIG1) and Parkin co-regulated gene (PACRG) interact, and that sperm-assoc
99 found that MEIG1 associates with the Parkin co-regulated gene (PACRG) protein, and that testicular P
100 combined with motif conservation upstream of co-regulated gene clusters allowed the construction of p
105 ults in increased expression of the Hha/H-NS co-regulated gene hilA without affecting the expression
106 ning and user-friendly platform for building co-regulated gene modules and the tools necessary for th
107 nisms from diverse phylogenetic clades (4678 co-regulated gene modules, 3466 regulators and 9291 cis-
109 enriched biological processes and discovered co-regulated gene networks and transcription factors pre
114 goal of these analyses is to define sets of co-regulated genes and identify patterns of gene express
115 ne expression paradigm, implying that active co-regulated genes and their regulatory factors cooperat
116 such as the detection of co-expressed genes, co-regulated genes and transcription factor binding moti
123 Transcriptome analyses identify clusters of co-regulated genes during NC specification and migration
125 Combinatorial sequence analysis of these co-regulated genes generated a hypothetical regulatory c
128 cose represses transcription of a network of co-regulated genes in Saccharomyces cerevisiae, ensuring
131 transcriptional patterning model is that the co-regulated genes knirps (a short gene) and knirps-rela
132 ression changes, we demonstrate a cluster of co-regulated genes known to have impact in the extracell
134 ression dataset by looking for enrichment of co-regulated genes relative to an empirical null distrib
135 A major subnetwork containing 61 closely co-regulated genes showed highly significant enrichment
136 l model for biclustering to infer subsets of co-regulated genes that covary in all of the samples or
137 xamined the phenotypes of mutations in seven co-regulated genes that had no published role in chemota
138 model for interrogating the contribution of co-regulated genes to in vivo phenotype as its multinucl
139 nd developmental stages revealed clusters of co-regulated genes with shared cis promoter elements, wh
141 DS but instead result from the clustering of co-regulated genes, a function of mammalian genome organ
143 gulatory modules governing the expression of co-regulated genes, Creme 2.0; and a dynamic portal to m
144 uced well-defined modules of region-specific co-regulated genes, in contrast to standard coexpression
145 1-ICD-overexpressing BS149 cells revealed 42 co-regulated genes, including glycoprotein non-metastati
146 roaches have focused on inferring modules of co-regulated genes, linking these modules with regulator
148 asizing common features of large clusters of co-regulated genes, our results highlight the extent to
149 ative positioning of either co-functional or co-regulated genes, stems from two main approaches.
150 tocyte genes reveal two distinct clusters of co-regulated genes, suggesting that male and female game
151 deled as a collection of regulatory modules: co-regulated genes, the conditions under which they are
152 transcription cofactors p300/HDAC1 to these co-regulated genes, thereby altering the host gene expre
153 popular technique used to identify groups of co-regulated genes, to infer unknown gene functions.
156 p- and down- regulation of several groups of co-regulated genes, with ADR1-dependent genes being the
157 cing experiments further reveals clusters of co-regulated genes, with in situ hybridization confirmin
165 y with Kismet throughout the ISC genome, and co-regulates genes in ISCs, including Cbl, a negative re
166 ing classifies co-expressed, and potentially co-regulated, genes into biologically informative catego
167 de insights into how competing behaviors are co-regulated.Genes and circuits involved in sleep and se
170 cero-phosphorylcholine), was identified in a co-regulated group of genes enriched for components of t
171 transcriptional control circuits that affect co-regulated groups of genes: a key to understanding how
172 wild-type p53 and hypoxia-inducible factor 1 co-regulate hDBR1 expression, and insufficient hDBR1 lea
173 ribe an approach to comprehensively identify co-regulated, heterogeneously expressed genes among cell
174 st to reveal functional associations between co-regulated human proteins from ProteomeHD, a compilati
176 We report that astrocytic insulin signaling co-regulates hypothalamic glucose sensing and systemic g
178 In agreement, EZH2 and Lat1 expression are co-regulated in models of cancer cell differentiation an
179 lin-dependent protein kinase II (CaMKII) are co-regulated in nucleus accumbens (NAc), a brain reward
181 y common biochemical processes; how they are co-regulated in response to specific stressors; and how
183 n and the Pi stress response are intricately co-regulated in the soil bacterium Agrobacterium tumefac
184 urons into different subtypes and discovered co-regulated injury-response genes including novel regen
185 Whatever the molecular mechanism by which CO regulates ion channels, endogenous production of this
187 ough heritable genetic polymorphisms or as a co-regulated mediator of the pathology, and may play a r
188 neurons, upregulated miRNA target genes are co-regulated members of prosurvival pathways associated
189 that TrmB transduces a growth rate signal to co-regulated metabolic pathways including amino acid, pu
191 t the network hub gene Bcat1 and seven other co-regulated MMnet genes out of 13, regulate bone functi
200 iry, and clockwork orange) were predicted to co-regulate nearly half of the genes that were upregulat
201 is unique switch arrangement of overlapping, co-regulated NES/NLS sequences is vital to delineating t
202 d co-methylation network analyses identified co-regulated networks in maternally inherited Ube3a dele
205 point receptors), which are co-expressed and co-regulated on dysfunctional or 'exhausted' T cells in
206 arch for conserved overrepresented motifs in co-regulated operons identified likely -35 and -10 promo
208 nia oxidizer community and ambient substrate co-regulate optimum temperatures (T(opt)), generating di
209 ering groups of correlated genes potentially co-regulated or associated to the disease or conditions
212 We show that the expression of a set of co-regulated ozone-induced genes is Ca(2+)-dependent and
213 pression are generally correlated within the co-regulated pairs and are anti-correlated within the an
214 nalysis showed that most of the genes in the co-regulated pairs participate in biological regulation.
215 alogs of testis-biased genes, we identified "co-regulated" paralogous pairs in which both genes are t
216 ant for revealing the related mechanisms and co-regulated pathways involved in the development of agi
217 beginning to understand the microbiota-host co-regulated pathways underlying these processes, paving
218 thereby preventing elaboration of the toxin co-regulated pilus (TCP) and cholera toxin in vitro and
219 teria by host immune defences, and the toxin co-regulated pilus (TCP) required for colonization.
220 s encoding cholera toxin (ctx) and the toxin co-regulated pilus (tcp), as well as accessory colonizat
223 ation of specific glycans are organized into co-regulated polysaccharide utilization loci, with the a
226 type VI secretion system (T6SS), haemolysin co-regulated protein (Hcp), binds directly to effectors,
228 f secreted proteins, specifically haemolysin co-regulated protein and an RTX toxin-like membrane fusi
229 d procedure yields a 50.9-fold enrichment of co-regulated protein candidates and a 2.5-fold improveme
230 and the founding substrate of the haemolysin co-regulated protein secretion island II T6SS (H2-T6SS).
232 ur discovery of highly localized operon-like co-regulated regions of chromatin modification is unprec
233 oratory has demonstrated that the haemolysin co-regulated secretion island I (HSI-I)-encoded type VI
235 s, analysing expression profiles in terms of co-regulated sets of genes or in terms of higher-order e
236 ght into determining functionally related or co-regulated sets of genes, suggest annotations of previ
237 llular functions of POU3F2 and TRIM8 as they co-regulate several pathways related to neural developme
238 rs participate in dense interactions between co-regulated subnetworks and contribute to therapy resis
241 defined by Oamb and Octbeta3R respectively, co-regulate sugar consumption according to changes in en
242 and several blocks of duplicated genes were co-regulated, suggesting some type of epigenetic or posi
244 ivity of the enhancer in vivo MIST1 and PTF1 co-regulate target genes synergistically or additively,
245 iments have initially validated about 30% of co-regulated target genes identified by ChIP-BIT as bein
247 y influence expression and middle-level ones co-regulate targets to mitigate information-flow bottlen
248 SUZ12 resulted in upregulation of TBX2/EGR1 co-regulated targets accompanied by a dramatic inhibitio
250 GAP2A and its human-specific paralog SRGAP2C co-regulate the development of excitatory and inhibitory
251 le, miR-18a-3p, -320a, -193b-3p, and -92b-3p co-regulate the glycolysis/gluconeogenesis and focal adh
253 s into how climate change and human land use co-regulate the vegetation and carbon cycles of a tropic
254 articles, we demonstrated that PlpA and MglA co-regulated the direction of gliding motility through d
255 Here we reported that GATA-1 and GATA-2 co-regulated the expression of two microRNA genes, micro
256 as a novel IBP cofactor, which specifically co-regulates the chromatin accessibility of hundreds of
258 NRF-2 is of special significance because it co-regulates the expressions of mediators of energy meta
259 g those with undetectable plasma HIV-1 RNA), co-regulates the glucocorticoid receptor and PPARgamma a
260 knock-out rat model, we show that GalNAc-T2 co-regulates the metalloproteinase-mediated limited prot
261 lex is a component of a genetic pathway that co-regulates the stability of the p53 and E2F-1 transcri
262 y, CRC factors exhibit prominent capacity of co-regulating the epigenome in cooperation with EWS-FLI1
263 53 maintains plasticity of imaginal discs by co-regulating the maintenance of genome integrity and di
264 ar, if the core genes for a trait tend to be co-regulated, then the effects of peripheral variation c
268 anscytosis and paracellular permeability are co-regulated through a signaling pathway linking dynamin
269 n, CrMYC2 is capable of activating ORCA3 and co-regulating TIA pathway genes concomitantly with ORCA3
275 However, whether active deubiquitination co-regulates ubH2A levels in ESCs and during differentia
276 al role in flagellar assembly and evolved to co-regulate various cellular processes with motility.
277 ndependent contribution of the three H1-T6SS co-regulated vgrG genes, vgrG1abc, to bacterial killing.
279 proteins with similar abundance profiles are co-regulated, we clustered the proteins with abundance p
281 hierarchical clustering identified 426 genes co-regulated with ENHO in liver, ileum, kidney medulla,
282 mplexan invasion-related motility genes were co-regulated with genes encoding the flagellar apparatus
283 acterium salinarum that is transcriptionally co-regulated with genes of the aerobic physiologic state
286 an intestinal copper transporter (Atp7a) was co-regulated with iron transport-related genes by a hypo
288 These analyses identified novel targets co-regulated with Maspin in human short-term cultures de
290 ng key enzymes of the C4 pathway are already co-regulated with photosynthesis genes and are controlle
293 The closely related protein Dichaete is co-regulated with SoxN and has a partially redundant fun
294 transcription factor binding on one side and co-regulated with the Mediator complex recruitment and H
297 yeast, we discovered that most RBP genes are co-regulated with their target genes, but the RBPs tend
298 find that Set2 has a short half-life and is co-regulated, with RNAPII CTD phosphorylation levels, du
299 any UC risk genes are cell type specific and co-regulated within relatively few gene modules, suggest
300 the balance of its receptors Neo1 and Unc5B co-regulate Wnt and MAPK pathways in both mouse and huma