ライフサイエンスコーパス: code

1 regulatory response inherent to the genetic code.

2 criptome by using a specific TSS recognition code.

3 d activity in the low-dimensional population code.

4 ween the bases that define the complementary code.

5 ntains Supplementary File 1 material and the code.

6 standardized extraction tool, compiled, and coded.

7 by representing them with overlapping neural codes.

8 lassification of Disease-9th edition (ICD-9) codes.

9 ation of Diseases, Ninth and Tenth Editions, codes.

10 acterial peritonitis identified by ICD-9/CPT codes.

11 esponse element in pattern-based information codes.

12 ational Classification of Diseases diagnosis codes.

13 terviews, and hospital and death certificate codes.

14 nt subset of neurons than experiential value coding.

15 on and its rather distant cousin, predictive coding.

16 ll, and therefore may not affect information coding.

17 cal layers, and rhythms implement predictive coding.

18 n induced a switch from absolute to relative coding.

19 d thematically using deductive and inductive coding.

20 specifically interneuronal, affiliations and coded a network of proteins comprising a few highly inte

21 istinct steps in 10 unique modules, with the code able to access 17 different reactions.

22 DNA is a threat to the genomic integrity and coding accuracy of the chromosomes of all living organis

23 Given our publicly available R code and data, others can complete a broad assessment of

24 ed in the structure of the universal genetic code and may have contributed to shaping it.

25 ase (>150 ms from image onset) IT population code and produced commensurate behavioral deficits for l

26 These tools are implemented in custom code and separate packages, often requiring different so

27 Others can integrate the codes and implement the method in academic software.

28 the implications of our findings for neural coding and for brain-controlled bionic hands.

29 ogical processes had variable proportions of coding and non-coding mutations, with chromatin remodeli

30 ys, including Wnt and Notch, altered by both coding and non-coding mutations.

31 y deliver more meaningful prediction in both coding and non-coding regions of the cancer genome.

32 ed for processing and/or degradation of both coding and non-coding RNAs.

33 MRX restricts transcription of coding and noncoding DNA by a mechanism that does not re

34 res from neutrality across the locus in both coding and noncoding regions.

35 ly recruits the Set3 complex to both protein-coding and noncoding RNA (ncRNA) genes via a SUMO-intera

36 refore enables cells to selectively regulate coding and noncoding RNAs.

37 late the stability and, hence, expression of coding and noncoding RNAs.

38 provides a blueprint for dissection of their coding and noncoding roles.

39 We designed a 20.5 Mb array targeting coding and regulatory regions of genes with a known role

40 In particular, using Freedom House's coding and terminological classifications, the proportio

41 Ranking data using transplant recipient zip code, and nationwide County Health Rankings were created

42 result from difficulties related to landmark coding, and predict recovery of allocentric strategies i

43 Pseudocode and source code are provided.

44 tional Classification of Diseases diagnostic codes are used to estimate acute gastroenteritis (AGE) d

45 cules can silence the gene carrying the same code as the particular RNA of interest.

46 ficiaries were more likely to have surgeries coded as complex (15.6% of cases vs 8.8%, P < .0001), an

47 andom forests using diagnostic and procedure codes as well as sociodemographic features were used to

48 ticularly, the knowledge learnt from protein-coding ASD risk genes was transferred to the prediction

49 ife Identification Numbers (LINs), which are codes assigned to individual genomes based on reciprocal

50 The concentration-dependent spatio-temporal code at the output of the antenna circuits determines th

51 ptured in UHDDS); 406 (86.0%) were correctly coded based on chart review.

52 read divergence remains a major issue for MC codes based on acceptance-rejection sampling.

53 The code-based incidence of SCAD has increased over time, hi

54 Then, signals are reformatted to reduce the coding biases inherent in peripheral mechanics, and wind

55 ars: -26 [95% CI: -31, -21]) coinciding with code-bundling events instituted by Medicare (CT, nuclear

56 HGNC) guidelines for naming not only protein-coding but also RNA genes and pseudogenes, and outline t

57 rial transcriptomic data commonly ignore non-coding but functional elements e.g. small RNAs, long ant

58 Disruption of this stem abolishes the non-coding, but not the coding, function of the endogenous x

59 transmitting information according to Morse code by blowing the sensors, monitoring increasing and d

60 [Z = A or G]), glycine (coded by GGX), Ser (coded by AGY), and Arg (coded by CGX and AGZ).

61 (coded by GGX), Ser (coded by AGY), and Arg (coded by CGX and AGZ).

62 ty, including cut-like homeobox 2 (a protein coded by CUX2), Glu504Lys of acetaldehyde dehydrogenase

63 G]), alanine (coded by GCX), aspartic acid (coded by GAY [Y = U or C]), glutamic acid (coded by GAZ

64 (coded by GAY [Y = U or C]), glutamic acid (coded by GAZ [Z = A or G]), glycine (coded by GGX), Ser

65 (coded by GUX [X = U, C, A or G]), alanine (coded by GCX), aspartic acid (coded by GAY [Y = U or C])

66 c acid (coded by GAZ [Z = A or G]), glycine (coded by GGX), Ser (coded by AGY), and Arg (coded by CGX

67 e only seven primordial amino acids: Valine (coded by GUX [X = U, C, A or G]), alanine (coded by GCX)

68 as methylation can modulate the information coded by the sequence, process named epigenetics.

69 creasingly stable in time as the information coded by those patterns transitioned from low-to-high le

70 iodically repeating events and that the rate code can flexibly transfer to new situations.

71 decreased correlations increased information coding capacity.

72 ge N = 320K), conditioning on a broad set of coding, conserved and regulatory annotations.

73 dors is believed to begin as a combinatorial code consisting of distinct patterns of responses from o

74 rom information theory, an efficient retinal code could be defined as one that reduces redundancy to

75 l cortex: the Allen Brain Observatory Visual Coding dataset.

76 The same procedure code definitions for NDI were applied to both Medicare a

77 Models incorporating coded diagnoses and procedures yielded a mean area under

78 omic regions or de novo, from previously non-coding DNA.

79 least as high as that observed for damaging coding DNVs.

80 Dementia was identified from diagnosis codes documented in a beneficiary's first 3 years of obs

81 uction hypothesis, a theory of retinal color coding emerged in which the three most common retinal ga

82 ncounter between 2008 and 2018 who moved zip codes exactly once or never moved.

83 By providing coded examples using integrated nested Laplace approxima

84 The phase-of-firing code exceeds information that can be obtained from firin

85 llelic deletions were predicted to result in coding exon disruption.

86 Two ophthalmologists without coding experience used an interactive application in MAT

87 In predictive coding, experience generates predictions that attenuate

88 Here we investigate amino acid code for fuzzy binding in terms of the entropy of the pr

89 ical diagrams, a full parts list, and source code for its firmware included as Supplementary Informat

90 onal firing rates of hippocampal place cells code for periodically repeating events and that the rate

91 However, the population code for space did not generalize across tasks, particul

92 R code for the proposed methods is available at github.com

93 pital admission including an explicit sepsis code for those beneficiaries in those calendar years ros

94 Robust population code for viewpoint and actor's body posture emerged shor

95 ng frames predicted from the genomic islands coded for enzymes belonging to the Nitro-FMN-reductase s

96 nriched for innate immune-related functions, coded for nonrandom protein-protein interaction networks

97 These findings are notable because SLC7A11 codes for a cysteine-glutamate anti-porter regulating le

98 le neurons can generate complementary neural codes for acoustic stimuli.

99 tion of Disease for Oncology, Third Edition, codes for both morphologic features (melanoma, 8720-8790

100 proximately 350 kb downstream of GDF6, which codes for growth and differentiation factor 6.

101 ification of Diseases, 9thRevision diagnosis codes for infective endocarditis (IE) in the National In

102 PYGM codes for myophosphorylase, the enzyme catalyzing the in

103 nce imaging (fMRI) to investigate the neural codes for representing stimulus information held in diff

104 ed presence of a microbiology order, billing codes for surgical site infections and post-procedural a

105 hine learning, CEFCIG reveals unique histone codes for transcriptional regulation of reported CIGs, a

106 to have missense mutations in VPS4A, a gene coding for an ATPase that regulates the ESCRT-III machin

107 GRM3 (the gene coding for mGluR3) is also genome-wide associated with r

108 RNAs coding for nAChR monomeric subunits and/or concatamers w

109 Compared to FF, FFPE transcripts coding for nuclear/cytoplasmic proteins involved in DNA

110 e show that an OCS pipeline focused on genes coding for transcription factors increases isoform detec

111 Here, we develop an efficient coding framework for higher-level cognitive processes in

112 Within a predictive coding framework sensory information could be down-weigh

113 s from patients with at least one AF billing code from 2010 to 2017: a training set (n=886), an inter

114 Crashes were coded from the video and other data streams by trained a

115 hrough Systematized Nomenclature of Medicine codes from the ESPRESSO (Epidemiology Strengthened by hi

116 s stem abolishes the non-coding, but not the coding, function of the endogenous xbp-1 transcript.

117 inversions associated with expressed protein-coding fusions, breakend hypermutation, and acral, but n

118 cient translational bypassing of a 50-nt non-coding gap in a phage T4 topoisomerase subunit gene (gp6

119 luenced by a single QTL encompassing the Adh-coding gene and its known regulatory locus, delta-1.

120 sly undescribed mechanism of de novo protein-coding gene evolution.

121 verlap was found in plastid-targeted protein-coding gene families compared with Arabidopsis, but an a

122 The postsynaptic adapter protein-coding gene, SHANK2, located on Chromosome 11q13, was di

123 e new Brian2GeNN software uses a pipeline of code generation to translate Brian scripts into C++ code

124 50.37-50.58 Mb, mm10) containing two protein-coding genes (Hnrnph1, Rufy1) that was necessary for red

125 stream genes in mouse, including 117 protein-coding genes and 144 lincRNA genes, 93.7% of which are m

126 We identify 1434 protein-coding genes and 39,806 noncoding regions for which mole

127 ndings implicate more than 5% of all protein-coding genes and provide evidence for gene sets involved

128 SSP-coding genes are frequently overlooked, because genome a

129 show that homologs of the identified protein-coding genes as well as genes in close proximity to the

130 response to P starvation, 40% of all protein-coding genes exhibit a transition from one chromatin sta

131 sis that gene expression profiles of protein-coding genes expressed in peripheral white blood cells (

132 we used new pol II promoters from endogenous coding genes to express crRNA for Cas12a and obtained a

133 istinct proteins covering 95% of Mtb protein-coding genes using artificial antigen-presenting cells (

134 Of the 23,248 predicted protein-coding genes, 12,346 venom-gland-expressed genes constit

135 o 24 chromosomes and annotate 32,690 protein-coding genes.

136 accessions as the outcome of SNPs in enzyme-coding genes.

137 INFERence of the molecular mechanisms of NOn-coding genetic variants (SparkINFERNO), a scalable bioin

138 fy novel therapeutic targets in the vast non-coding genome to enhance radiation therapy.

139 e bioinformatics pipeline characterizing non-coding genome-wide association study (GWAS) association

140 pe of infrequent driver mutations in the non-coding genome.

141 GCaMP6s mosquitoes, we show that Ae. aegypti code geosmin in a qualitatively similar fashion to flies

142 Chirality codes, global, multivariate descriptors, are then introd

143 patient code or >=2 outpatient CHD diagnosis codes >30 days apart documented outside of pregnancy and

144 -productive splicing events in 7,757 protein-coding human genes, of which 1,246 are disease-associate

145 According to the efficient coding hypothesis, sensory systems are adapted to maximi

146 AP firing, emphasizing the role of temporal code in conveying key information about changes in nocic

147 oding analyses suggested observational value coding in amygdala neurons occurred in a different subse

148 tions for using XDream to investigate neural coding in biological preparations.

149 mon neurophysiological substrate for spatial coding in navigation and episodic recall.

150 he order of 10(-3)), they affect information coding in populations on the order of 100 s of neurons.

151 smitter systems in modulating working memory coding in prefrontal circuits.SIGNIFICANCE STATEMENT Ong

152 ibition of MEC led to a disruption of border coding in RSC, but not vice versa, indicating allocentri

153 We examined preparatory coding in the human hippocampus and mPFC, two regions th

154 arthritis were labeled as IDRIs if discharge codes included opioid and/or amphetamine misuse.

155 ch category-selective neurons do not in fact code individual categories in isolation but are also sen

156 Non-coding IPS1 RNA is highly expressed during Pi starvation

157 Access to analytical code is essential for transparent and reproducible resea

158 Furthermore, the differential adhesion code is regulated by the sonic hedgehog morphogen gradie

159 Our code is released open source and freely available to the

160 motion-related VIP neuron activity to visual coding is not known.

161 ses and the detection of novel expressed non-coding loci.

162 edical record abstractions and available ICD codes (median age, 69 years [interquartile range, 54 to

163 Switching between these two spatial coding modes was supported by the interaction between ex

164 microRNAs (miRs) are small non-coding molecules that regulate post-transcriptional targ

165 Code-multiplexing of distributed Coulter sensors enables

166 We propose that the song system motor code must compensate for these changes to achieve its ac

167 genes and mechanisms that are altered by non-coding mutations and offer insights into additional canc

168 r gene expression signatures as samples with coding mutations in these genes.

169 RNA splicing is primarily altered by non-coding mutations in this cohort, and samples containing

170 s in this cohort, and samples containing non-coding mutations in well-known RNA splicing factors exhi

171 ilitate the identification of functional non-coding mutations, we present dbInDel, a database where w

172 proliferation pathways altered primarily by coding mutations, while developmental pathways, includin

173 s had variable proportions of coding and non-coding mutations, with chromatin remodeling and prolifer

174 nt and Notch, altered by both coding and non-coding mutations.

175 hat an inpatient stay that included a sepsis code not only identifies beneficiaries who were less res

176 n the DNA that modulates the position of the coding nucleotide and thereby impacts the identity of th

177 fied for exception from informed consent (21 Code of Federal Regulations 50.24).

178 The International Code of Nomenclature of Prokaryotes (ICNP) only recogniz

179 racterized by the transcription factor motif codes of their promoters.

180 Here, we hypothesize that the coding of foreseeable outcomes is potentially unclear fr

181 ed sensory receptors able to provide dynamic coding of sound signals.

182 Adaptive coding of stimuli is well documented in perception, wher

183 ined neuron populations for grouped-ensemble coding of survival behaviors.

184 females have anomalies in their gene arrays coded on the X chromosome that result in significantly d

185 s to the reaction knowledge base and further code optimization.

186 CHD was defined as >=1 inpatient code or >=2 outpatient CHD diagnosis codes >30 days apar

187 identification relies on diagnosis/procedure codes or lists of patients diagnosed or treated by speci

188 fication of Diseases, Ninth Revision (ICD-9) codes or their Tenth Revision equivalent were used to de

189 high-resolution surface features, with phase coding organized to support this function.

190 for both the identification of candidate non-coding pathogenic variants and their functional validati

191 t, when a purine nucleotide was in the first coding position, DNA synthesis fidelity was similar to t

192 d messenger RNAs) and others lacking protein-coding potential, named noncoding RNAs.

193 uld generate chimeric human-viral mRNAs with coding potential.

194 Thus, a compositional neural code potentially contributes to efficient reading.

195 n grid spacing, no difference in the spatial coding properties of the grid cells across all three gro

196 thin these three groups have similar spatial coding properties.

197 and protein, the ribosome translates mRNA to coded protein in all living systems.

198 ded in the structure of the standard genetic code, providing robustness against mutations that increa

199 Temporal coding quality was evaluated as vector strength in respo

200 We include step-by-step commented R code (R Foundation for Statistical Computing, Vienna, Au

201 s process requires that the ASOs bind in the coding region and reduce the target mRNA by RNase H1 whi

202 strongly suggest a single-base change at the coding region of ClVST1(97) as a major molecular event d

203 which is an expansion of CAG repeats in the coding region of the causative genes that are otherwise

204 -associated risk loci are located in the non-coding region of the genome and therefore, their target

205 ific HLA peptides derived from annotated non-coding regions could elicit anti-tumor immune responses.

206 mutations in pbp1, pbp2, and/or pbp3 within coding regions near known amoxicillin binding motifs.

207 tructure, expression, or function of protein-coding regions of cancer-biology related genes (gHFI) de

208 tion of VACV transcripts start or end within coding regions of neighbouring genes.

209 Recent genomic analyses revealed that the coding regions of PbANKA and the closely related Plasmod

210 ults uncover a function for ribosomes on non-coding regions of RNAs and reveal the mechanisms underly

211 meaningful prediction in both coding and non-coding regions of the cancer genome.

212 An analysis of the coding regions of the genome in 886 index cases of PID f

213 derstanding of the rules that govern the non-coding regions of the genome is less complete than our u

214 ecular inversion probes that targeted mainly coding regions.

215 less complete than our understanding of the coding regions.

216 affected transcripts but rather the protein-coding regions.

217 most of the sites were located within genes' coding regions.

218 eed to understand the functional role of non-coding regulatory elements (REs).

219 UniRule rules and the code required to run the rules, are publicly available f

220 Metabolism Regulator (lincNMR) is a long non-coding RNA (lncRNA) which is induced in hepatocellular c

221 PPARalpha directly upregulates the long non-coding RNA gene Gm15441 through PPARalpha binding sites

222 The long non-coding RNA NEAT1 serves as a scaffold for the assembly o

223 Long intergenic non-coding RNA-Nucleotide Metabolism Regulator (lincNMR) is

224 (2.94-fold), GWAS loci (1.52-fold), and non-coding RNAs (1.44-fold), compared with random distributi

225 Long non-coding RNAs (lncRNAs) are defined as non-protein-coding

226 Long non-coding RNAs (lncRNAs) are often aberrantly expressed in

227 Non-coding RNAs are fundamental to the competing endogenous

228 Circular RNAs (circRNAs), a class of non-coding RNAs generated from non-canonical back-splicing e

229 We find that alignments for several long non-coding RNAs previously shown to lack covariation support

230 of EVs identifies diverse RBPs and small non-coding RNAs requiring the LC3-conjugation machinery for

231 MicroRNAs (miRNAs) are small non-coding RNAs that have been successfully identified to be

232 Small RNAs are non-coding RNAs that play important roles in the lives of bo

233 MicroRNA-27a/b are small non-coding RNAs which are reported to regulate inflammatory

234 t eukaryotic pre-messenger RNAs and long non-coding RNAs, introns are removed through the process of

235 Enhancer RNAs (eRNA) are unstable non-coding RNAs, transcribed bidirectionally from active reg

236 ons, and regulation of transcription via non-coding RNAs.

237 ng and/or degradation of both coding and non-coding RNAs.

238 nonlinear mixed selectivity may be a general coding scheme exploited by the brain for reliable and ef

239 A stable coding scheme simplifies readout for WM-guided behaviour

240 results indicate that the brain regions and coding schemes supporting relations and movements betwee

241 ds as well as an enhancement of the neurons' coding selectivity.

242 techniques that are needed to interpret the coded sensor outputs.

243 trains have over an order of magnitude fewer coding sequence mutations outside of duplicated domains

244 We then use genome editing to disrupt the coding sequence of a S. rosetta C-type lectin gene, rose

245 The binding site within the beginning of the coding sequence of the prfA gene, which encodes the mast

246 R) and rare codons at the beginning of their coding sequence.

247 AAV-PHP.B vector carrying the mouse Slc25a46 coding sequence.

248 icrobial community by cataloging the protein-coding sequences (CDS) present in the metagenome of the

249 931,698 reads were annotated into 11,676 coding sequences (CDS), which were manually curated into

250 ary transcripts of eukaryotic nuclear genes, coding sequences are often interrupted by U2-type intron

251 ll-known mutagen, has been maintained within coding sequences of crucial plant and animal genes.

252 rnative reading frames, we found a conserved coding signature in an alternative frame in exons 2 and

253 other hand, allows for identification of non-coding somatic variation and expanded estimation of back

254 1 snRNP (U1), vertebrates' most abundant non-coding (spliceosomal) small nuclear RNA, silences proxim

255 ents with preoperative MOLST have documented code status discussions before surgery.

256 ies during new learning leads to dissociable coding strategies in hippocampal subfields, in line with

257 al Classification of Diseases, 10th Edition, coding strategies.

258 me information along with an ensemble pMHC-I coding strategy, and developed a group feature selection

259 rated the mirGFF3 format directly into their code, such as, miRge2.0, IsoMIRmap and OptimiR.

260 ed whether the same brain regions and neural codes supporting spatial navigation are recruited when h

261 al Classification of Diseases, 10th Edition, coding systems, evaluating estimates of two previously p

262 n a specified geography (census tract or ZIP code tabulation area [ZCTA]).

263 selective neuron, we discovered a population code that allowed us to classify action exemplars irresp

264 neration to translate Brian scripts into C++ code that can be used as input to GeNN, and subsequently

265 correction via a standard Reed-Solomon outer code that is interleaved across strands.

266 y Greedy Exhaustive Search) error-correcting code that repairs all three basic types of DNA errors: i

267 rts of an HIV algorithm from Medicaid claims codes that have been compared with an HIV surveillance s

268 For specific codes, the overall PPV, NPV, sensitivity, and specificit

269 ive debriefs between coach/coachee pairs, co-coding themes based on established principles of effecti

270 We provide analysis code to aid future analysts in implementing this method.

271 Using a custom code to find the magnetic co-representations of all band

272 mmalian brain uses a hippocampal prospective code to forecast temporally structured learned associati

273 as measured from the patient's permanent zip code to the transplant hospital using shared access sign

274 3, employing diagnoses, drugs, and procedure codes to define diseases and procedures.

275 nmeasured confounders and the use of billing codes to identify cohorts.

276 ulation of reported CIGs, and utilizes these codes to predict CIGs and their master regulators with h

277 eins at DNA damage sites serve as DNA damage codes to recruit specific DNA repair factors.

278 that lncRNAs are distinct from both protein-coding transcripts and genomic background noise in terms

279 ng RNAs (lncRNAs) are defined as non-protein-coding transcripts that are at least 200 nucleotides lon

280 reviously unreported subset of small peptide-coding transcripts was identified from these lncRNA loci

281 -specific definitions) during follow-up, and code transmission test scores.

282 ate the probing of the spatiotemporal neural codes underlying behaviour.

283 e population sequencing data in studying non-coding variant classes.

284 The strongest coding variant in schizophrenia GWAS is a missense mutat

285 e regulatory role of enhancer-associated non-coding variants in cancer epigenome, and to facilitate t

286 Coding variants in TMEM175 are likely to be responsible

287 Previous genome-wide scans found many non-coding variants under selection, suggesting a pressing n

288 noncoding variants and/or by rare but severe coding variants, many de novo.

289 ast genetic diversity as naturally occurring coding variants, yet the impact of these variants on pro

290 needed to identify individual risk genes, as coding variation across many genes confers risk for SCZ

291 availability' section an incorrect accession code was given.

292 0 weeks after transplantation; adverse event coding was centralised.

293 tely insured, and patients in low-income ZIP codes were less likely than those in higher income areas

294 Diagnostic criteria and procedure codes were used to identify condition at admission, incl

295 t on an example with the perfect [[5, 1, 3]] code, which exhibits a pseudo-threshold of p ~ 0.50 unde

296 misation was done using a computer-generated code with stratification by site.

297 tivity was greater for persons living in zip codes with lower annual household income.

298 ntegrating the concepts of neural population coding with distributed processing.

299 Results are color-coded, with emphasis on buried groups.

300 ality is represented by a spatial population code within regions involved in sensory and appetitive p