ライフサイエンスコーパス: coevolution

1 idence of adaptive signal and sensory system coevolution.

2 ps and exploring the molecular basis of this coevolution.

3 rope is a canonical example of host-pathogen coevolution.

4 s often under selection during host-parasite coevolution.

5 rategies have developed during host-pathogen coevolution.

6 yet largely unexplored, role in plant-insect coevolution.

7 ffer opportunities to capture the process of coevolution.

8 ce tracking than with the arms race model of coevolution.

9 ry into the fascinating field of virus-plant coevolution.

10 gered the lineage and participated in Ab-Env coevolution.

11 d extracellular transmission in fungus-virus coevolution.

12 he best-documented examples of host-pathogen coevolution.

13 ese intriguing signatures of host-microbiome coevolution.

14 ion molecule (SLAM) family during host-virus coevolution.

15 nsect herbivory remains a classic example of coevolution.

16 complex and diverse as a result of long-term coevolution.

17 les could result from plastid-nuclear genome coevolution.

18 ither single-species evolution or reciprocal coevolution.

19 heek teeth have been viewed as an example of coevolution.

20 e family from the viewpoint of host-pathogen coevolution.

21 the host, contrary to models of synchronized coevolution.

22 increase; for example, during host-parasite coevolution.

23 t proposed forms of mitonuclear compensatory coevolution.

24 chemical interactions which drive amino-acid coevolution.

25 mportance of specific factors that structure coevolution.

26 echanism of pheromone-sensor recognition and coevolution.

27 d did not arise by a dominating mechanism of coevolution.

28 vering genes having promising estimations of coevolution.

29 site interactions and the underlying mode of coevolution.

30 mation, as one can include analyses of their coevolution, acquisition or loss of functionalities, str

31 CladePP detects local coevolution across hundreds of genomes and points to the

32 hus, the next step in this canonical case of coevolution after a species jump has been further escala

33 Our data, which demonstrate human TCR-MHC coevolution after divergence from rodents, explain the g

34 cases truly represent sexually antagonistic coevolution; alternatively, ecological or neutral proces

35 of a small number of restraints predicted by coevolution analysis can provide a powerful restriction

36 We found that multiscale coevolution analysis is significantly more biologically

37 ng Gag-protease single genome sequencing and coevolution analysis of protein sequences in 4 patients

38 Using sequence coevolution analysis, we found evidence for a similar an

39 c differences in nonapeptide ligand/receptor coevolution and behavior.

40 for residue-level contact prediction by six coevolution and deep learning-based programs, which resu

41 uires theoretical treatments of gene-culture coevolution and dual inheritance, in addition to purely

42 een the fungus and the host in shaping their coevolution and ecological role in both natural grass ec

43 lation of the response to dopamine drove the coevolution and intramolecular communications between co

44 Our study, therefore, highlights how coevolution and its ecological consequences may result f

45 Our results reveal an unexpected coevolution and kinetic interplay between NNMT and NamPT

46 ology approaches including genomic analysis, coevolution and network-based modeling have provided an

47 Although molecular coevolution and phylogenetic history are interdependent,

48 variants inside cells, minimizing undesired coevolution and propagation of nonfunctional library mem

49 tocol to study the interplay between residue coevolution and structural conservation of protein-prote

50 identified by covariance analysis of residue coevolution and structural-alphabet-based local dynamics

51 differentiate the shared history of genes to coevolution and thus improve their accuracy.

52 perimental work indicating that plasmid-host coevolution, and epistatic interactions on fitness costs

53 atural infections, may help drive virus-host coevolution, and promote virus persistence.

54 tial multiprotein replicase interactions and coevolution, and support future studies aimed at stabili

55 is vaccine-driven example of human/bacterial coevolution appears to confirm the Red Queen hypothesis,

56 at CLPs participate in dynamic host-parasite coevolution, as more mobile hosts can fuel CLP adaptatio

57 By exploring the dynamics of coevolution at the phenotypic and genomic level for both

58 Using two contrasting evolutionary analyses, coevolution-based contact prediction and sequence conser

59 -based contact prediction methods with three coevolution-based methods on 75 CASP13 targets consistin

60 e accurate contact prediction than the local coevolution-based methods, leading to a substantial incr

61 We investigate coevolution between 5.4 million pairs of proteins in Esc

62 mathematical framework for investigating the coevolution between an immune-evasive cancer population

63 or by intrinsic biological interactions like coevolution between antagonists is a matter of active de

64 , and will help quantify complex patterns of coevolution between CLPs and their various hosts.

65 ent theory suggests that a community, due to coevolution between constituent species, may act as a pa

66 ins adaptive changes in brain structure, and coevolution between functionally related structures.

67 An understanding of coevolution between hosts and parasites leads to predict

68 hese changes may drive future adaptation and coevolution between interacting species.

69 However, clear coevolution between plant competitors has been rarely do

70 n space and phenotypes, a classic example of coevolution between predatory common garter snakes (Th.

71 rotein interfaces, but the extent of residue coevolution between protein families on the whole-proteo

72 We also show that coevolution between replicase proteins over long-term pa

73 Coevolution between resource and consumer species genera

74 er, Sharon et al. report direct evidence for coevolution between TCR and MHC genes, helping to explai

75 onal interactions between proteins result in coevolution between the interaction partners, causing th

76 These results suggest a functional coevolution between the Phe43 cavity and the gp120 inner

77 Coevolution between transposable elements (TEs) and thei

78 stimates for the strength of direct pairwise coevolution by coupling a well-established coevolutionar

79 challenge the evidence of tick-host-pathogen coevolution by hypothesizing that A. phagocytophilum uti

80 Our results show that coevolution can be a major process shaping species trait

81 that the direct coupling analysis of residue coevolution can be extended to connect the different sca

82 Our results show that sequence coevolution can be used to understand specificity determ

83 in our simulations, suggesting that sequence coevolution can inform the frequency of interaction and

84 Host-parasite coevolution can maintain high levels of genetic diversit

85 he present study, however, demonstrates that coevolution can maintain stable host mate choosiness and

86 Coevolution can promote long-term coexistence of two com

87 Patterns of molecular coevolution can reveal structural and functional constra

88 study system for investigating plant-insect coevolution, convergent and divergent adaptations, and t

89 her state-of-the-art approaches ranging from coevolution coupling analysis to deep neural network tra

90 f pathogenicity, incorporating both sequence coevolution data and structure- and dynamics-based featu

91 in the absence of reciprocal host evolution (coevolution) described here, future studies should addre

92 these 2 elements are engaged in antagonistic coevolution despite the fact that TART-A is serving a cr

93 cid divergence, presumably due to host-virus coevolution, duck IFITM3 is functional against IAV.

94 The study of molecular coevolution, due to its potential to identify gene regio

95 We introduce a nuanced hypothesis, the 'coevolution effect'.

96 mics in the complex system, where host-virus coevolution facilitated coexistence of predator and viru

97 in Mycobacterium tuberculosis We find strong coevolution for binary complexes involved in metabolism

98 complexes involved in metabolism and weaker coevolution for larger complexes playing roles in geneti

99 signal of the dependent evolution of sites (coevolution) from the effects of shared ancestry of gene

100 The residue coevolution gave a readout of subunit architecture.

101 Our work also demonstrates how coevolution-guided mutagenesis and the mapping of sequen

102 nded in recent years to studies ranging from coevolution-guided rational protein design to protein fo

103 Residue-residue coevolution has been observed across a number of protein

104 The quantitative study of gene-culture coevolution has focused in particular on the mechanisms

105 Coevolution has long been thought to drive the exaggerat

106 ed nature of CRISPR-dependent bacteria-virus coevolution has provided strong selection for the evolut

107 iral restriction, suggesting that virus-host coevolution has required adaptations of enzymatic functi

108 inference methods detecting residue-residue coevolution have recently triggered considerable progres

109 ions between host and pathogens during their coevolution have shaped both the immune system and the c

110 ation, mechanisms, and role in host-pathogen coevolution, highlighting common patterns across hosts a

111 Important insights into adaptation, coevolution, host specialization, and mating system evol

112 c taxa supports the mitonuclear compensatory coevolution hypothesis, but the ubiquity and importance

113 attern that involves the study of amino acid coevolution in an ensemble of sequences comprising a pro

114 ere, we review the evidence for gene-culture coevolution in animals, especially birds, cetaceans and

115 ll-studied interactions reveals evidence for coevolution in both systems.

116 Understanding the mechanisms enabling coevolution in complex mutualistic networks remains a ce

117 s a promising model of host-pathogen-culture coevolution in humans.

118 y coevolution, the importance of mitonuclear coevolution in key biological processes such as speciati

119 Virus-antibody coevolution in macaques can thus recapitulate developmen

120 o develop methods predicting the presence of coevolution in molecular sequences.

121 constitutes a crucial mechanism facilitating coevolution in multispecies plant-pollinator networks.

122 ervations of extant communities suggest that coevolution in nature occurs in networks of antagonism a

123 encourage explicit analyses of gene-culture coevolution in nature.

124 Quantifying coevolution in species-rich communities has several pote

125 We found that the predator slowed host-virus coevolution in the complex system and that the virus' ef

126 ntext, neutral genetic divergence and sexual coevolution in the correlated evolution of antagonistic

127 arn more about the nature of phage-bacterial coevolution in the environment.

128 s or more particularly, host/symbiont genome coevolution in the holobiont is only now being revealed.

129 Here we consider the role of plant-herbivore coevolution in the maintenance and characteristics of di

130 Despite billions of years of cooperative coevolution - in what is arguably the most important mut

131 a DNA binding site and how their independent coevolution, in a stabilizing fitness landscape, of two

132 We take advantage of this coevolution, in combination with structure modeling, to

133 f sequence-specific sensing on host-pathogen coevolution, including endogenous sequences of foreign o

134 s is unique in that it not only uses residue coevolution information in the target protein family, bu

135 luster-wide scale, integrating pairwise gene coevolution information with large-scale phylogenetic an

136 We consider a two-species model of coevolution involving one host and one parasite populati

137 Coevolution is a force contributing to the generation an

138 Culture-led gene-culture coevolution is a framework within which substantive expl

139 This coevolution is consistent with the hypothesis that the e

140 ty fluctuated through time, as expected when coevolution is driven by negative frequency-dependent se

141 theory suggests that the scope for perpetual coevolution is limited, if traits involved in IRSC are s

142 Sexually antagonistic coevolution is predicted to lead to the divergence of ma

143 cies, whereby a shared outcome of virus-host coevolution is the use of CXCR6 or other alternative cor

144 tects functional linkage between genes using coevolution, is a powerful approach to identify factors

145 Here we propose that coevolution leads to a dynamical trade-off.

146 on, and a third one where dislocation/solute coevolution leads to jerky flow as a precursor of dynami

147 Owing to a complex history of host-parasite coevolution, lentiviruses exhibit a high degree of speci

148 Through coevolution, mammals and these microbes have developed a

149 se results as they relate to signal-receiver coevolution, mate choice, and reproductive isolation.

150 ve computational biologists as a resource of coevolution matrices, e.g., for developing machine learn

151 Thus, understanding coevolution may require investigating broad sets of popu

152 Here we investigate the coevolution mechanisms and dynamics between information

153 ding, the empirical research on the systemic coevolution mechanisms connecting these two spreading dy

154 Here, we apply a global coevolution method, statistical coupling analysis (SCA),

155 mals, vertebrates, animals, plants) at which coevolution occurred.

156 We show that (i) coevolution occurs rapidly within few generations, (ii)

157 degree of opening with AimB size, suggesting coevolution of AimB with MreB conformational dynamics in

158 ses total ecosystem biomass and promotes the coevolution of all cells in the ecosystem.

159 atile analysis and visualization of pairwise coevolution of amino acid residues.

160 y related comimics, suggesting that parallel coevolution of ancestral elements facilitated pattern mi

161 se in which continual evolution results from coevolution of at least two species.

162 formation and growth of black holes and the coevolution of black holes and galaxies.

163 Thus, despite the coevolution of both functions, the active site of this p

164 Based on the recognized coevolution of cancer-associated fibroblasts (CAF) with

165 Our results are consistent with the coevolution of CENP-N and CENP-A and establish the struc

166 These results suggest the coevolution of clay minerals and early metabolites in ou

167 tionary theory that describes the reciprocal coevolution of competing species.

168 s if character displacement results from the coevolution of competitors [7, 8].

169 e new insights into better understanding the coevolution of cooperation and phenotypic diversity.

170 Understanding the coevolution of deltaic channels and their flux organizat

171 aling may provide a mechanism to explain the coevolution of developmentally and functionally integrat

172 of editing patterns is largely explained by coevolution of editing sites and PPR proteins.

173 Finally, we study the coevolution of engagement and acculturation.

174 ch dynamics, we propose a novel model of the coevolution of epidemic and awareness spreading processe

175 Based on these data, we suggest coevolution of epigenetic promoter elements during the e

176 Their model shows the coevolution of farming and farming-friendly property rig

177 Coevolution of gammaherpesviruses with their hosts has r

178 Our results suggest global coevolution of GPCRs and RAMPS and support the hypothesi

179 etypical mechanism, which may have supported coevolution of hemolysis and normal vascular function.

180 ir evolutionary context to postulate how the coevolution of host and pathogen shaped the cellular ant

181 The coevolution of hosts and their bacterial pathogens in th

182 landscape will lead to new insights into the coevolution of hosts and their phage, which can ultimate

183 with habitat fragmentation causes localized coevolution of hosts, obligate parasites, and pathogens

184 Our results reveal a historical coevolution of human-water systems, which could inform w

185 nalysis in the conterminous US to assess the coevolution of humans and water resources from 1790 to 2

186 In anglerfishes, coevolution of innate and adaptive immunity has been dis

187 pecies interactome mapping demonstrates that coevolution of interacting proteins is remarkably preval

188 These data demonstrate that the coevolution of LHCPs and cpSRP43 occurred independently

189 ressures (Po2) is inextricably linked to the coevolution of life and Earth's biogeochemical cycles.

190 The coevolution of mammalian hosts and their beneficial comm

191 est possible benefits from understanding the coevolution of many kinds of dueling contagions.

192 t virus-encoded immune inhibitors.IMPORTANCE Coevolution of multicellular organisms and their natural

193 The data support the hypothesis that the coevolution of multiple mechanisms, including cuticular

194 to explore how trait correlations affect the coevolution of mutualistic species not only in pairs of

195 he diversity and taxonomy of mycoviruses and coevolution of mycoviruses and their fungal hosts.

196 e and pace of virus evolution.IMPORTANCE The coevolution of myxoma virus (MYXV) and European rabbits

197 The coevolution of myxoma virus (MYXV) and wild European rab

198 The best-documented field example is the coevolution of myxoma virus (MYXV) in European rabbits.

199 ng active prophages is critical for studying coevolution of phage and bacteria, investigating phage p

200 ages and bacteria, which likely results from coevolution of phages and bacteria.

201 l a These findings provide insights into the coevolution of photosynthetic pigments and pigment-prote

202 , and contribute to our understanding of the coevolution of plant-associated bacteria.

203 The coevolution of plants and microbes has shaped plant mech

204 text of their effects on Family B GPCRs, the coevolution of RAMPs with many GPCR families suggests an

205 Here, we mathematically model the coevolution of sex-specific helping and sex allocation,

206 y and multi-population dynamics to model the coevolution of social behavior and recognition.

207 work thus provides a compelling view of the coevolution of surface states through a topological phas

208 However, further coevolution of the A and B types can perturb and eventua

209 The tight coevolution of the beak and the remainder of the skull i

210 epers seems to be characterized by a tighter coevolution of the beak and the rest of the skull (crani

211 lls in an experimental design that precluded coevolution of the cells with the virus.

212 unity in some plant lineages, as well as the coevolution of the EDS1/PAD4 pathway and drought respons

213 There is no support for the adaptive coevolution of the Galpha:RGS protein pair based on sing

214 ingle amino acid substitution-based adaptive coevolution of the Galpha:RGS proteins was proposed to e

215 t the roles of biogenic nanomaterials in the coevolution of the lithosphere and biosphere and provide

216 The coevolution of the OR repertoire and the olfactory syste

217 en the intein and its exteins, which implies coevolution of the parasitic intein and its host protein

218 and the host grass is presumed to align the coevolution of the species towards specialization and mu

219 unexpected fungal SRP diversity and suggest coevolution of the two most conserved SRP features-SRP R

220 Finally, sequence records reveal that the coevolution of these sites played an essential role in t

221 To gain insights into the coevolution of this interkingdom predator-prey relations

222 Coevolution of ticks and the vertebrate immune system ha

223 other elastic systems suggests that similar coevolution of traits may be found in other ectothermic

224 While coevolution of transporter associated with antigen proce

225 Coevolution of Tribbles and the PSL in metazoans further

226 Reciprocal coevolution of tumors and their microenvironments underl

227 Thus, despite long coevolution of virus and host effectors in the natural h

228 a previously unrecognized complexity in the coevolution of virus and host.

229 RNA modification of host plants and viruses; coevolution of virus-host interactions; viruses as tools

230 Coevolution of viruses and their hosts may lead to viral

231 The resultant antagonistic coevolution often leads to extreme adaptations in both p

232 l a striking pattern of decoupled host/virus coevolution on a continental scale, and highlight knowle

233 ic datasets and challenge our predictions of coevolution on the 16S rRNA molecule by comparing them w

234 ectron microscopy has revealed the effect of coevolution on the mitoribosome with the mitochondrial g

235 lict has contrasting effects on antagonistic coevolution: Pleiotropic constraints stabilize the dynam

236 We explore the hypothesis that coevolution points to structurally conserved contacts at

237 The Geographic Mosaic Theory of Coevolution predicts that coevolutionary arms races will

238 mechanisms for Magnaporthe species, and this coevolution processes is greatly driven by directional s

239 Direct coupling analysis of nucleotide coevolution provides a novel approach to identify which

240 Recent developments have shown that residue coevolution provides accurate predictions of heterodimer

241 ubiquity and importance of such compensatory coevolution remains a topic of debate.

242 Coevolution results in more convex (costly) trade-offs a

243 al success during ecological competition and coevolution (revealed in the evolution experiments).

244 Despite coevolution's long suspected importance, we have yet to

245 l methods that yield numerical estimates for coevolution's strength and significance in the wild.

246 orth America has become a classic example of coevolution, shedding light on predator-prey dynamics, t

247 couplings between IB-GGGG motifs matched the coevolution signal as well as contact couplings.

248 Yet, the significance of coevolution signals remains to be established.

249 PCR interactions has recently been fueled by coevolution studies and orthogonal technological screeni

250 oss-protection mutualism without a period of coevolution, suggesting that similar mutualisms may aris

251 The recent hypothesis of "RNA-peptide coevolution" suggests that the current close relationshi

252 d link these to the long-standing virus-host coevolution that may have allowed a large diversity of e

253 has allowed us to learn about the virus-host coevolution that prevents the damaging effects of the in

254 this integration is presumably maintained by coevolution, the importance of mitonuclear coevolution i

255 onistic relationships are thought to lead to coevolution, this is not always clear in virus-host inte

256 onvergence implies that lineage-specific X-Y coevolution through gene amplification, and the selfish

257 volution of musicality involves gene-culture coevolution, through which proto-musical behaviors that

258 gesting that they may be key in antagonistic coevolution to escape host suppression.

259 ed out an evolution experiment, allowing for coevolution to occur, with the entomopathogenic fungus,

260 l pattern-producing networks and cooperative coevolution to resolve the inverse design of metamolecul

261 one such stabilizing factor is host-plasmid coevolution under antibiotic selection, which facilitate

262 (NKT) cells, respectively, may result from a coevolution under particular selection pressures.

263 s macaques-elicited patterns of Env-antibody coevolution very similar to those in humans, including c

264 omo-oligomeric interfaces by tracing residue coevolution via the global statistical direct coupling a

265 With these simulations and sequence coevolution, we generated a statistical model of interac

266 study the molecular basis for predator-prey coevolution, we investigated how Caenorhabditis elegans

267 ese intriguing features of MHC evolution and coevolution, we offer suggestions for future studies and

268 ng analysis of inter-protein residue-residue coevolution, we provide multi-scale evidence for direct

269 Compensatory coevolution, whereby the nuclear genome evolves to compe

270 model the underlying evolutionary process of coevolution, which enable to differentiate the shared hi

271 ld come fast, but understanding gene-culture coevolution will be hampered by the measured pace of res

272 Here we ranked 17,487 mammalian genes for coevolution with 6 distinct DNA repair pathways.

273 We examine their coevolution with bacterial transition metal acquisition

274 e in double-strand break repair based on its coevolution with homologous recombination.

275 origin of endophytic Epichloe species, their coevolution with host grasses and identification the gen

276 Many microbes, during their coevolution with human subjects, developed mechanisms to

277 pesviruses, EBV has diversified through both coevolution with its host and genetic exchange between v

278 ersistence, a result of millions of years of coevolution with its host.

279 d suggest that dental innovation rather than coevolution with major plant clades was a major driver i

280 em, especially during coinfection and during coevolution with manipulative parasites.

281 ighlights how host diet and metabolism shape coevolution with microbes.

282 y accomplished via convergent intramolecular coevolution with only modest architectural changes in le

283 ction and abortive infections operate during coevolution with phages, driving phages to much lower de

284 Antagonistic coevolution with selfish genetic elements (SGEs) can dri

285 Prior to any subsequent coevolution with social learning, we suggest that aspect

286 Host phylogeny, geographic isolation and coevolution with symbionts derived from very different s

287 For similar reasons, its coevolution with the cestode parasite Schistocephalus so

288 race with pathogen-derived inhibitors or by coevolution with the Cf-2 immune receptor detecting inhi

289 a-globin gene expression is supported by its coevolution with the cryptic donor site in primate speci

290 Through the long history of coevolution with their host plants, insects have develop

291 n events illustrate the pronounced impact of coevolution with these extrachromosomal elements on bact

292 o(8)-OXT), and this ligand shows significant coevolution with traits including social monogamy and li

293 atterns of positive selection that suggest a coevolution with viral pathogens.

294 ial when selection rapidly fluctuates during coevolution with virulent parasites ('the Red Queen Hypo

295 cause of perpetual intersexual antagonistic coevolution with wide-ranging evolutionary consequences.

296 em to study host-pathogen specialization and coevolution, with hundreds of Microbotryum species speci

297 ere distributed in 23 Gag-protease groups of coevolution, with the viral matrix and the capsid repres

298 effects, which is probably driven by genomic coevolution within lineages, might be an important sourc

299 t as directly interacting species in shaping coevolution within mutualistic assemblages.

300 statistical framework that captures residue coevolution within proteins.