ライフサイエンスコーパス: coevolve

1 environment-dependent payoffs and strategies coevolve.

2 ion under conditions with which they did not coevolve.

3 d their opinions and the network connections coevolve.

4 lly dependent on each other that they had to coevolve.

5 That is, black holes and bulges coevolve.

6 to understand how a host and its microbiome coevolve.

7 ap initially, but gets costly when predators coevolve.

8 and suggests the N1 TMD and head domain have coevolved.

9 nication signals and perceptual systems have coevolved.

10 B and LanC enzymes appear to not always have coevolved.

11 he virus and the host's immune response have coevolved.

12 A56, indicating that these proteins may have coevolved.

13 es of terrestrial vertebrates with whom they coevolved.

14 hose motions are thermally coupled have also coevolved.

15 e amongst JDP partners, as many of them have coevolved.

16 both sexes and their lateral mating behavior coevolved.

17 gumes and soil bacteria called rhizobia have coevolved a facultative nitrogen-fixing symbiosis.

18 Thus, yeast and Ty1 have coevolved a form of copy number control that is benefici

19 Creation of optimal coevolving active-site networks is therefore an importan

20 Predators coevolved alongside prey bacteria and so encode diverse

21 Analyses of coevolved amino acid positions suggest that structurally

22 natural proteins in which sparse networks of coevolving amino acids (termed sectors) comprise the ess

23 subset of the H7N9 HA sequences demarcating coevolving amino acids appears to be in the antigenic re

24 ypically coevolve, and the identification of coevolving amino acids can pinpoint residues required fo

25 ent a hypothesis that a network of conserved coevolving amino acids in inteins mediates these long-ra

26 ences has revealed "sectors" of collectively coevolving amino acids in several protein families.

27 ns in an evolutionarily conserved network of coevolving amino acids in the PDZ family (the sector) th

28 sparse networks of physically contiguous and coevolving amino acids underlie basic aspects of structu

29 The animal and bacterial kingdoms have coevolved and coadapted in response to environmental sel

30 We show that coevolved and conserved interactions point to specific c

31 Genes encode components of coevolved and interconnected networks.

32 properties found in streptophyte algae have coevolved and reflect the strength of any CCM or degree

33 mbers with a XX domain, the two modules have coevolved and that the length of a loop within the XX do

34 Interacting proteins typically coevolve, and the identification of coevolving amino aci

35 about how animals and their microbiomes have coevolved, and how these relationships affect the ways t

36 a focal host or pathogen is tested against a coevolved antagonist from the past, present, or future,

37 under which sequence, structure and function coevolve are not fully understood.

38 ts that the structural components of meiosis coevolve as adaptive modules that may change in primary

39 , a symbiotic host-microbial interaction has coevolved as bacteria make essential contributions to hu

40 sal ganglia and that the PPN appears to have coevolved as part of a mechanism for action selection co

41 tified TERTs and find that TEN and TRAP have coevolved as telomerase-specific domains.

42 Most studies involve non-coevolved associations, indicating that fitness alignmen

43 Animals are colonized by coevolved bacterial communities, which contribute to the

44 fitness, genomes and phenotypic diversity in coevolving bacterial communities composed of Myxococcus

45 Our study shows how competition between coevolving bacterial strains can generate antibiotic res

46 thesize that larger brains and smaller teeth coevolved because behavioral changes associated with inc

47 gical function or if their expression levels coevolve between species.

48 , suggesting that reproductive molecules may coevolve between the sexes.

49 inding surface, indicative of a coordinated, coevolving binding surface.

50 exotic species' traits, or (iii) novel (non-coevolved) biotic interactions has never been quantified

51 power and thermal robustness of performance coevolve, both being emergent properties of the same ela

52 capsid antibody evasion and tropism, can be coevolved by combining rational design and library-based

53 te accelerated genomic evolution specific to coevolving communities, including the rapid appearance o

54 ls unanticipated evolutionary modularity and coevolving components.

55 that the Cbeta FG loop and CD3gamma subunit coevolved, consistent with this notion.

56 ons to incorporate costs and benefits of two coevolving costly traits: cooperative and local cohesive

57 , quantified by methane production, requires coevolved cross-feeding interactions between species [12

58 utter ants following full domestication of a coevolving cultivar 30-35 Mya after the first attine ant

59 real-world social behaviors involve dynamic, coevolving decisions by interacting agents, which poses

60 s that GT-A fold glycosyltransferases employ coevolving donor, acceptor, and catalytic subsite module

61 In many cases, host and pathogen have coevolved, each acquiring sophisticated ways of inducing

62 Together, these findings imply that coevolved ecological interactions in species-rich system

63 any invasive species are able to escape from coevolved enemies and thus enjoy a competitive advantage

64 scape can decouple and protect asexuals from coevolving enemies.

65 ics, is but one of the challenges facing the coevolving fields of computational, evolutionary, and th

66 tural environment that is enriched by highly coevolving flexible residues.

67 Humans and viruses have been coevolving for millennia.

68 Using replicate seminatural populations of a coevolving freshwater invertebrate-parasite system (host

69 However, because the coevolving genes are not necessarily in physical linkage

70 Distinct combinations of alleles in coevolving genes interact differently, conferring varyin

71 y among these is the disruption of favorable coevolved genetic interactions that can occur following

72 in Gag is as conserved as other collectively coevolving groups of sites in Gag.

73 hogens should be considered as two extensive coevolving groups rather than as individual host species

74 re are more major-effect genetic variants in coevolved host-pathogen interactions.

75 ll intestinal immune maturation depends on a coevolved host-specific microbiota.

76 omoted greater stability of a plasmid in its coevolved host.

77 its of resistance and virulence in a tightly coevolving host-pathogen pair.

78 persistence is due to robust, and sometimes coevolved, host-microbe and microbe-microbe interactions

79 tent with EAB being a secondary colonizer of coevolved hosts, drought stress decreased the resistance

80 odulated disease risk, and the disruption of coevolved human and H. pylori genomes can explain the hi

81 morphic, physically unlinked, and putatively coevolving human gamete-recognition genes ZP3 and ZP3R.

82 ounding microenvironment are hypothesized to coevolve in a manner that promotes tumor growth, invasiv

83 ation are functionally related and do indeed coevolve in predictable ways.

84 Residue pairs that directly coevolve in protein families are generally close in prot

85 ents [7]-and of how cooperation and conflict coevolve in response to environmental fluctuation repres

86 nteract in gene-for-gene (GFG) relationships coevolve in the familiar boom-and-bust cycle, in which r

87 ction regulation, and population frequencies coevolve in the simple case of two cell types producing

88 ntized native structure and stepwise folding coevolved in ancient repeat proteins and were retained a

89 using and +1 nucleosome positioning may have coevolved in animals.

90 thesis are both derived characters that have coevolved in anophelines, driving the adaptation of a fe

91 DNA binding preferences of nucleosomes have coevolved in different species.

92 vered that PCNA-partner interactions tightly coevolved in fungal species, leading to specific modes o

93 tants and 2) inactivation of H(2)ase by O(2) coevolved in photosynthesis.

94 shows that CD4 T cell memory and lymph nodes coevolved in placental mammals.

95 w is that the ancestral alphaherpesvirus VZV coevolved in simians, apes, and hominins in Africa.

96 levant PLK1 and PP2A-B56 binding motifs have coevolved in the same region on MADBUB homologues.

97 lent health care-associated MRSA strains may coevolve innate host defense peptide and antibiotic resi

98 Coevolving interacting genes undergo complementary mutat

99 These findings suggest that there is a coevolved interaction between the juxtatransmembrane ami

100 Here, I argue that the changing balance of coevolved interactions between hosts and their antagonis

101 tems, food webs are built on a foundation of coevolved interactions between plants and their consumer

102 ommunity might be co-selected as a result of coevolved interactions.

103 how allosteric activators and their targets coevolve is poorly understood.

104 on with the substrate are compensated by the coevolving L449F and S451N cleavage site mutations.

105 thers and cooperative enzymatic activity can coevolve, leading to the evolution of physically linked

106 aptured through small modifications of these coevolving learning and data-acquisition mechanisms, who

107 Plants and their pathogens coevolve locally.

108 The model employs relatively simple coevolving mechanisms of learning and data acquisition t

109 alytic core C-terminal cysteine pairs of its coevolved MerA and by glutathione (GSH), the major compe

110 d by our increasing awareness of the role of coevolved microbial symbionts in health and disease.

111 ey bee gut, which harbors a highly specific, coevolved microbiota heavily involved in bee immune func

112 Tigriopus californicus to disrupt putatively coevolved mitonuclear genotypes in reciprocal F(2) hybri

113 udies in Arabidopsis and tobacco, identify a coevolved module between the EDS1-SAG101 heterodimer and

114 ector targets in plants, support a model for coevolving molecular dialogs between effector repertoire

115 tional design and library-based evolution to coevolve multiple, desirable properties onto AAV by harn

116 Our computational model simulates coevolving multitype virus and antibody populations.

117 egion and part of the capsid region from the coevolved mutant gag gene were sufficient to achieve ful

118 strate interactions reveal that compensatory coevolved mutations in the substrate do not restore inte

119 HIV-1 protease with p1-p6 substrates bearing coevolved mutations.

120 an additional constraint in the selection of coevolved mutations.

121 curring heterotrophic bacterium SAR11 form a coevolved mutualism that maximizes their collective meta

122 es a potent immunomodulatory function in the coevolved network of host-parasite relationships during

123 t noncatalytic sites that restore an optimal coevolving network and vice versa.

124 00-fold range by mutation of residues in the coevolving network.

125 Interacting proteins and protein domains coevolve on multiple scales, from their correlated prese

126 Therefore, black holes coevolve only with bulges.

127 ignificant fitness costs to the interacting, coevolving organisms.

128 res both technical and social innovations to coevolve over time into integrated socio-technical urban

129 cross coupled brains are linked and how they coevolve over time.

130 spheric oxygenation, and marine ecology have coevolved over geologic time.

131 Even Ala substitutions for coevolved pairs of residues at the interface between alp

132 onformations and to the cooperativity of the coevolving pairs.

133 lity is rapidly extinguished by relentlessly coevolving parasites and pathogens.

134 Under the "Red Queen" hypothesis, coevolving parasites reduce the reproductive advantage o

135 he existence of hot spots and cold spots for coevolving parasites.

136 uppression methods, including the release of coevolved parasitoid species targeting invasives, have b

137 eriod prepares the animal to engage with the coevolved partner(s) with fidelity following birth or ha

138 a high-affinity, functional complex with its coevolved partner, TgRON2L1.

139 e antibiotics that specifically suppress the coevolving pathogen Escovopsis, which infects the ants'

140 s, consistent with the Red Queen hypothesis, coevolving pathogens can select for biparental sex.

141 ueen hypothesis proposes that selection from coevolving pathogens facilitates the persistence of outc

142 was correlated with the range of hosts that coevolved phage were able to infect.

143 which is consistent with the fact that both coevolved phenotypes resemble strains commonly found in

144 ,7), altered selective regimes could disrupt coevolved plant-pollinator interactions, weakening an im

145 ults demonstrate a significant potential for coevolved plant-pollinator relationships to be disrupted

146 is demonstrates that the highly variable but coevolving polar residues at the interface of dimeric bu

147 nism for this lectin complex formation where coevolving polar residues of high closeness are responsi

148 stic interactions between mutations from the coevolved populations.

149 ng selection dynamic; FSD) in experimentally coevolving populations of bacteria and viruses.

150 ely to be due to generalized transduction by coevolving populations of phages, which could efficientl

151 ion analysis and experimentation to identify coevolving positions and found that residues 35 and 39 a

152 Furthermore, in contrast to most coevolving protein residues that contribute to the same

153 ghtly coupled interaction involving a single coevolved R gene and effector pair.

154 tion alters the lysin-VERL interface, FITZAP coevolves rapidly to maintain lysin binding.

155 h different progression driver mutations may coevolve rather than compete during clonal evolution.

156 mographic shifts have profoundly altered the coevolved relationship between host and microbiota, depl

157 nhabit mammalian body surfaces have a highly coevolved relationship with the immune system.

158 acid (rTCA) cycle and clay mineral catalysts coevolved remains a mystery in the puzzle to understand

159 istical coupling analysis (SCA), to identify coevolving residue networks (sectors) within the 23S rib

160 otein families, we find that 25% of directly coevolving residue pairs are separated by more than 5 A

161 The majority (91%) of directly coevolving residue pairs in the 5-15 A range are found t

162 Overall, the results suggest that directly coevolving residue pairs not in repeat proteins are spat

163 he exceptions to this general trend-directly coevolving residue pairs that are distant in protein str

164 ur in molecular dynamics simulations between coevolved residues Y402 and I412, stabilizing SCR7(Y402)

165 The occurrence of coevolving residues at the DnaJ recognition region paral

166 Identification of coevolving residues further advances the protein structu

167 ignments that was used to identify groups of coevolving residues termed "sectors".

168 In this paper, we identify groups of coevolving residues within HCV nonstructural protein 3 (

169 valuate how well methods developed to detect coevolving residues within proteins can be adapted for c

170 Here, using computational methods to predict coevolving residues, we identify a network of positions

171 to co-chaperone recognition and activity via coevolving residues, whereas interdomain allostery, crit

172 s to overcome the disruption of this tightly coevolving ribonucleoprotein.

173 In this work, the largest coevolving RNA/protein signatures in the bacterial 30S r

174 innate immune and stress responses, and as a coevolved sensory stimulus that modulates neuronal signa

175 hat the interplay between the disruptions of coevolved sets of loci by outcrossing, the efficient pur

176 A bioinformatics study identified a coevolving signal-accepting network of 10 amino acids in

177 s diversifies into defence specialists, when coevolved simultaneously with a virus and a predatory pr

178 ve process where EBV and its human host have coevolved so as to minimize the virus's potential to con

179 their host galaxies are generally thought to coevolve, so that the SMBH achieves up to about 0.2 to 0

180 er suppression documented here suggests that coevolving social strategies within natural populations

181 body of work has explored what happens when coevolved species shift out of sync, but virtually no st

182 Reciprocal selective effects between coevolving species are often influenced by interactions

183 thal interaction, wasps and their hosts have coevolved strategies to gain an advantage in this evolut

184 ukaryotic protein kinases (EPKs) feature two coevolved structural segments, the Activation segment, w

185 Many marine organisms have coevolved symbiotic relationships with nitrogen-fixing b

186 n as the kinetically favored pathway in this coevolved system.

187 orical host, further increasing risk in less coevolved systems.

188 Conversely, in Australia, where coevolved taxa are absent, R. marina largely fills its f

189 arch that ultimately serves to inform how to coevolve the design of EHR systems and organizational de

190 w intimately host pathogen interactions have coevolved through similar and divergent evolutionary str

191 drug resistance and immune escape mechanisms coevolve, thus increasing the likelihood of treatment fa

192 (AtNRG1) coiled-coil domain helper NLRs as a coevolved TNL cell death-signaling module.

193 sts that metazoan mucosal surfaces and phage coevolve to maintain phage adherence.

194 ions in only one env subunit, gp120 and gp41 coevolve to maximize viral fitness under sequential drug

195 S and HE are functionally interdependent and coevolve to optimize the balance between attachment and

196 We conclude that VAB and SN enhancement coevolved to compensate for loss of vision and to help b

197 Thus, host and pathogen have coevolved to enable viral persistence and survival with

198 falciparum, and the human immune system have coevolved to ensure that the parasite is not eliminated

199 2 and the composition of amniotic fluid have coevolved to ensure the formation of a functional barrie

200 proteins, suggesting that primate SAMHD1 has coevolved to evade these countermeasures.

201 suggests that both the protein and RNAs have coevolved to interact with each other such that a single

202 es of uPA:plasminogen and uPA:PAI-1 may have coevolved to maintain tight interactions.

203 rt B domains and mitochondrial adaptors have coevolved to meet the unique requirements for mitochondr

204 that these functionally interacting proteins coevolved to optimize the gastric colonization capacity

205 tigate how certain domains of E1 and E2 have coevolved to optimize their interactions to promote effi

206 Therefore, the R and arm domains may have coevolved to package different genomes within the conser

207 nervous and immune systems have, therefore, coevolved to permit effective immune surveillance while

208 n, highlighting mechanisms that viruses have coevolved to take advantage of peroxisome plasticity.

209 ed in a cultural niche and teaching-learning coevolved to transmit culture.

210 Membrane proteins and lipids coevolved to yield unique coregulatory mechanisms.

211 architecture of the SPP1 infectious particle coevolved toward high robustness.

212 mmalian immune system and the nervous system coevolved under the influence of infection and sterile i

213 ognate partners are rare because SK/RR pairs coevolve unique interfaces that dictate phosphotransfer

214 pecificity while relaxing the constraints on coevolving unique contact interfaces.

215 s mykiss (rainbow trout), with variants of a coevolved viral pathogen, infectious hematopoietic necro

216 dentity of mammals is defined in part by our coevolved virome, a concept with profound implications f

217 hether the nuclear and mitochondrial genomes coevolved will need a thorough investigation of the hund

218 How pathogens coevolve with and adapt to their hosts are critical to u

219 most abundant biological entity on earth and coevolve with bacteria.

220 re conclusions about which parts of galaxies coevolve with black holes, possibly by being regulated b

221 global processes, so the biggest black holes coevolve with bulges, but growth of the latter is driven

222 ers, global partner switching preference can coevolve with cooperation.

223 locally and stochastically, and they do not coevolve with disks and pseudobulges.

224 Evolutionary rates and selection pressure coevolve with macrostructural and microstructural change

225 ale preferences are thought to originate and coevolve with male traits.

226 Multicellular eukaryotes coevolve with microbial pathogens, which exert strong se

227 Occasionally, Gag sequences also coevolve with mutations at PR cleavage sites contributin

228 ources and how those resources influence and coevolve with plants as a frontier of plant ecophysiolog

229 Occasionally, Gag sequences also mutate and coevolve with protease, contributing to maintenance of v

230 ct microenvironments in murine sarcomas that coevolve with the immune system and suggest that patient

231 The ability of the immune system to coevolve with the microbiota during postnatal life allow

232 of RPS5, indicating that the LRR domain must coevolve with the NBS domain.

233 at which these pathways converge, appears to coevolve with the occurrence of trp and his genes.

234 We argue kinematics coevolve with the secondarily terrestrial lifestyle of t

235 e is known about whether such a capacity can coevolve with the social behavior it supports.

236 Neutralizing antibodies elicited by HIV-1 coevolve with viral envelope proteins (Env) in distincti

237 d not threonylate , suggesting that MST1 has coevolved with .

238 6)-methyladenine DNA modification negatively coevolved with 5mC pathways, which additionally contribu

239 Mammals have coevolved with a large community of symbiotic, commensal

240 Multiple gestations seem to have coevolved with a suite of reproductive adaptations, incl

241 genetic data that suggest that LIS1 may have coevolved with an autoinhibitory mode of cytoplasmic dyn

242 ur data suggest that HPV58 variants may have coevolved with archaic hominins and dispersed across the

243 ht be key antiviral factors of bats and have coevolved with bat-borne viruses.

244 that some of the fidelity functions of 53BP1 coevolved with class switch recombination (CSR) in the i

245 x assembly >300 bp away and how coregulation coevolved with coding sequences.

246 Manchurian ash (Fraxinus mandshurica), which coevolved with EAB, is more resistant than evolutionaril

247 was far higher when both bacterium and phage coevolved with each other than when phage evolved agains

248 dophytic Mucoromycotina fungi, both of which coevolved with early land plants.

249 itted behavior observed in some primates has coevolved with enlarged brains, complex sociality, and e

250 Protein folding coevolved with evolution of the exit tunnel.

251 f this unusual lateralized behavior may have coevolved with genital morphology, we quantified the sha

252 sidues of the gp120 inner domain layers have coevolved with H375 in order to maintain its ability to

253 ted with helicases in the replisome may have coevolved with helicases to increase the unwinding proce

254 ted hosts does not imply that symbionts have coevolved with hosts, let alone that they have evolved f

255 bacterium tuberculosis (M. tuberculosis) has coevolved with humans for millennia and developed multip

256 rus (HCMV) is a ubiquitous pathogen that has coevolved with its host and, in doing so, is highly effi

257 consider that chlorophyll degradation likely coevolved with land plants.

258 cal agents of tuberculosis and leprosy, have coevolved with mammals for millions of years and have nu

259 mplexes and that these signaling machineries coevolved with other components within plant species or

260 Placental development and genomic imprinting coevolved with parental conflict over resource distribut

261 on of cooperation: conditional harm may have coevolved with recognition first, thereby helping to est

262 hether stimulation by the inhibitory protein coevolved with resistance or whether it was acquired aft

263 reliance on culturally transmitted behavior coevolved with sociality and extended lifespan in primat

264 Sexual reproduction in Volvocine algae coevolved with the acquisition of multicellularity.

265 ins of life, and these regulatory mechanisms coevolved with the basal transcription machinery.

266 The human host has coevolved with the collective of bacteria species, terme

267 asked how corollary discharge inhibition has coevolved with the diversification of EOD duration.

268 is that, in plants, this signaling mechanism coevolved with the embryophytic life cycle and the acqui

269 pore complexes (NPCs) and nuclear membranes coevolved with the endomembrane system, and that the las

270 e gut, referred as the commensal microbiota, coevolved with the host and is essential for many host p

271 lectively known as the gut microbiota, which coevolved with the host in a mutually beneficial relatio

272 rich gastrointestinal microbiota, which has coevolved with the host over millennia and is essential

273 data provide insights into how retroviruses coevolved with the host to co-opt innate immune sensing

274 identified dozens of unrecognized genes that coevolved with the HRR pathway, either globally across a

275 M. tuberculosis has coevolved with the human host to evade and exploit host

276 is a benign cosmopolitan virus that may have coevolved with the human lineage and is an integral part

277 e next region, the "arm," seems to have also coevolved with the R domain to allow particle assembly v

278 expressions of anger and happiness may have coevolved with the regularity of conflict as a means of

279 Gammaherpesviruses coevolved with the vertebrate immune systems, establishi

280 iation in susceptibility to viruses that had coevolved with their host.

281 host-associated intracellular bacteria, have coevolved with their plasmids since their last common an

282 of the order Rickettsiales have inextricably coevolved with their various eukaryotic hosts, resulting

283 modification from guanosine to queuosine has coevolved with these genomic changes.

284 Our results show that phenotypic diversity coevolves with contingent cooperation under a wide range

285 ymmetric morphology in one sex correlates or coevolves with lateralized mating behavior in the other

286 r, but not nucleotide excision repair (NER), coevolves with longevity.

287 Gecko adhesion coevolves with modified muscles, tendons, and reflexes.

288 ion, with a focus on immune programming that coevolves with the developing microbiome early in life.

289 esource partitioning, we found that cheating coevolves with the ecological specialization toward asso

290 ganic anions and determine how the structure coevolves with the emission properties using solution as

291 patterns, with callitrichine miniaturization coevolving with a series of reproductive adaptations.

292 erial roots, F. hispida, and one wasp genome coevolving with F. microcarpa, Eupristina verticillata.

293 Coevolving with its human host, Mycobacterium tuberculos

294 ommon, consistent with both of these regions coevolving with pathogens.

295 roups rather than as individual host species coevolving with single pathovars.

296 Saxifragaceae), of which several species are coevolving with specialized pollinating floral parasites

297 ssion of a single classical MHC class I gene coevolving with TAP transporters, whereas class I genes

298 that there exists another orientation field coevolving with the cells and reinforcing their alignmen

299 3 plasmids, have a long association (and are coevolving) with the lineage, although frequent recombin

300 cts in different fields-especially when they coevolve-within the same physical system.