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1     Finally, we describe a workflow used for comparative genomics.
2 ng plant Ca accumulation using genetical and comparative genomics.
3 our understanding of functional genomics and comparative genomics.
4  model clade for the study of functional and comparative genomics.
5 s among genes across different species using comparative genomics.
6 lotype and structural variation analysis and comparative genomics.
7 acterial genomes, that were reconstructed by comparative genomics.
8 is combined with whole-genome sequencing and comparative genomics.
9 enzymes from those predicted on the basis of comparative genomics.
10  Orthology analysis is a fundamental tool in comparative genomics.
11 sis of urogenital schistosomiasis (UGS): (1) comparative genomics, (2) the development of functional
12                                  Integrating comparative genomics across 313 species and bioinformati
13 hybridized onto a D. mccartyi microarray for comparative genomics against four sequenced strains.
14                 Metabolic reconstruction and comparative genomics among assemblies show that these po
15 ing technologies have contributed greatly to comparative genomics among species and can also be appli
16 Y Chromosomes of sufficient quality for most comparative genomics analyses and for conservation genet
17                                              Comparative genomics analyses executed by powerful compu
18                                              Comparative genomics analyses identify extensive structu
19                                Moreover, our comparative genomics analyses provide novel insights int
20                                          Our comparative genomics analyses support this finding, show
21                                              Comparative genomics analyses with uncultivated environm
22 long-standing practice of manual curation in comparative genomics analyses.
23               Here we performed a systematic comparative genomics analysis of human disease-causing m
24                                          The comparative genomics analysis of strain ZYK(T) implies t
25 ack of tools for both small- and large-scale comparative genomics analysis of tRNA sequence features.
26                                    Moreover, comparative genomics analysis reveals that a greater num
27                                         This comparative genomics analysis suggests a high degree of
28                                              Comparative genomics analysis unravels lineage-specific
29                                              Comparative genomics analysis was carried out among zoys
30                             In this study, a comparative genomics analysis was performed to identify
31 models for each related organism used in the comparative genomics analysis.
32 illance metadata and novel data derived from comparative genomics analysis.
33 based on SLAF-seq and used them to perform a comparative genomics analysis.
34 sessment, comparisons and clustering), (iii) comparative genomics and (iv) analysis of regulatory var
35                            Using large-scale comparative genomics and advanced orthology evaluation t
36                                  Integrating comparative genomics and analyses of gene expression yie
37 ome sequencing and were investigated through comparative genomics and Bayesian coalescent analysis.
38                                              Comparative genomics and biochemical analysis of ASAT en
39 , we investigate the functions of APeg3 with comparative genomics and cell line-based functional appr
40 e also compared the proposed method with the comparative genomics and composition-based approaches.
41  3-way networks, illustrate their utility in comparative genomics and demonstrate how they find relat
42 undamental molecular resource for vertebrate comparative genomics and embryogenesis studies.
43 combination with other approaches, including comparative genomics and environmental field work, labor
44    Its resources are of great importance for comparative genomics and evo-devo approaches.
45 Glomus versiforme) and its MRE and performed comparative genomics and evolutionary analyses.
46 ively, our results provide the most complete comparative genomics and experimental analysis of mRBPs
47                                          The comparative genomics and experimental study, presented h
48                                          Our comparative genomics and expression data reshape our vie
49 ve data archives, which enable sophisticated comparative genomics and functional analysis of fungal p
50            Applying a combination of RNAseq, comparative genomics and functional experiments, we iden
51                                       Future comparative genomics and functional studies in closely r
52 overage can be useful for genome annotation, comparative genomics and functional studies.
53               Here, we used a combination of comparative genomics and heterologous synthetic misexpre
54 r groups should facilitate future studies on comparative genomics and identification of genes that co
55 ity scores), isolates were investigated with comparative genomics and in animal models.
56 S ribozyme, that has been identified through comparative genomics and is believed to be a metalloribo
57                                              Comparative genomics and linkage analysis identify candi
58                             Using integrated comparative genomics and machine learning techniques, we
59                        Seeking to facilitate comparative genomics and machine-learning analyses of re
60 genetic dissection of rubber related traits, comparative genomics and marker-assisted selection for t
61                                              Comparative genomics and metabolomics revealed that inte
62  of potential applications in paleogenomics, comparative genomics and metagenomics.
63                                  Here, using comparative genomics and microscopy, we show that a thre
64                 Here, using a combination of comparative genomics and molecular clock analyses, we sh
65 estor-is a prerequisite for many analyses in comparative genomics and molecular evolution.
66                                  Here, using comparative genomics and molecular genetic approaches, w
67                     Using genome sequencing, comparative genomics and mutagenesis, we defined new gen
68                                              Comparative genomics and new technologies may resolve th
69 as been extended with additional support for comparative genomics and ontology information.
70                               In this study, comparative genomics and phenotypic analysis were used t
71                                              Comparative genomics and phylogenetic analyses within th
72                                              Comparative genomics and phylogenetic analysis indicate
73                                              Comparative genomics and phylogenetic analysis of phage
74 l metabolic pathways of Asgard archaea using comparative genomics and phylogenetics to be able to ref
75  We analyze inter- and intraspecific plastid comparative genomics and phylogenomic relationships with
76 uctan biosynthetic genes were isolated using comparative genomics and physical mapping followed by BA
77                                      Initial comparative genomics and physiological studies have reve
78                                  The rise of comparative genomics and related technologies has added
79 portant for cold activity were identified by comparative genomics and substituted with evolutionarily
80                                        Using comparative genomics and surface plasmon resonance, we i
81                     Whole-genome sequencing, comparative genomics and systems biology are generating
82 is study provides an unexpected link between comparative genomics and topology, and demonstrates adva
83                       In this study, we used comparative genomics and transcriptome analysis of citra
84 resent LegumeIP, an integrative database for comparative genomics and transcriptomics of model legume
85  both strains by more than 5-log10 in <24 h, comparative genomics and transcriptomics revealed differ
86 oviding data and tools for researchers doing comparative genomics and translational studies.
87 m 43 plant species using both computational (comparative genomics) and experimental (direct cloning a
88 proved our resources for gene regulation and comparative genomics, and added CRISPR/Cas9 target sites
89 ne clusters identified by genome sequencing, comparative genomics, and chemical analysis in four plan
90 at causes QPD, we used epigenomic profiling, comparative genomics, and chromatin conformation capture
91 ing taxonomic validation, genome annotation, comparative genomics, and clinical testing.
92                   Transcriptional profiling, comparative genomics, and culture-based assays revealed
93 h the plurality signal is a frequent task in comparative genomics, and especially in phylogenomic ana
94 l, we undertook complementary computational, comparative genomics, and experimental approaches to ide
95 ulosis A combination of population genetics, comparative genomics, and investigations of Yersinia-fle
96 cember 2013 (GRCh38, UCSC hg38), a watershed comparative genomics annotation (100-species multiple al
97 d TaoR regulons in 45 Deltaproteobacteria by comparative genomics approach and predicted target genes
98 r of innate immunity signaling validates the comparative genomics approach for innate immunity gene d
99 e individuals in many species and designed a comparative genomics approach to bioinformatically ident
100                                    We used a comparative genomics approach to determine whether share
101 rmorant species and applied a predictive and comparative genomics approach to find candidate variants
102                  We report here the use of a comparative genomics approach to identify seven candidat
103                              We utilized the comparative genomics approach to infer candidate Rex-bin
104                                    We used a comparative genomics approach to investigate the evoluti
105            In the current work, we applied a comparative genomics approach to predict DNA-binding sit
106                                    We used a comparative genomics approach to reconstruct the N-acety
107                   To address this, we took a comparative genomics approach to study AUG and non-AUG u
108                                Here, using a comparative genomics approach we report general principl
109                                      Using a comparative genomics approach with four dicotyledonous p
110                                      Using a comparative genomics approach, we identified DNA motifs
111                                      Using a comparative genomics approach, we show that nature also
112                 We used the knowledge-driven comparative-genomics approach implemented in the RegPred
113                               In this study, comparative genomics approaches and the results of gene
114                                     However, comparative genomics approaches are limited to syntenic
115 nd genome evolution studies using visualized comparative genomics approaches in Brassicaceae species.
116               As a complement to genetic and comparative genomics approaches, the Encyclopedia of DNA
117            This has been driven primarily by comparative genomics approaches, which rely on accurate
118 cation of TF regulons is mostly done through comparative genomics approaches.
119 lopments in high-throughput technologies and comparative genomics are shedding light on the evolution
120 ) was recently identified in archaea through comparative genomics as being involved in methanopterin
121 y, riboswitches have been identified through comparative genomics based on sequence and structural ho
122                Our VISTA family of tools for comparative genomics, based on algorithms for pairwise a
123 tigs is primarily based on recombination and comparative genomics-based approaches.
124 ome includes 212 genes not found in previous comparative genomics-based core proteome definitions, ac
125 nimal gene lists have been proposed by using comparative genomics-based core proteome definitions.
126 l elusive origin of CNEs, and has provided a comparative genomics-based method of estimating the posi
127 whole genome level in C. reinhardtii using a comparative genomics-based method.
128                                         This comparative-genomics-based approach to the development o
129                                              Comparative genomics between early and later isolates ob
130                         We also explore what comparative genomics, both structural and responsive, ha
131        Non-B DB v2.0 extends the ability for comparative genomics by including re-annotation of the f
132                            AspGD facilitates comparative genomics by providing a full-featured genomi
133 l behavior, thus providing an example of how comparative genomics can be used to test sociobiological
134                                              Comparative genomics can leverage the vast amount of ava
135 dopsis have microbial homologs-cross-kingdom comparative genomics can powerfully complement plant-bas
136   These analyses demonstrate how large-scale comparative genomics can provide broad new insights into
137                                              Comparative genomics classified these pelagiphages into
138                                              Comparative genomics cluster analyses revealed novel gen
139  serves as a valuable resource for the plant comparative genomics community.
140                                              Comparative genomics complements genetic and biochemical
141                                              Comparative genomics contrasting the putative environmen
142 tabase for performing visualized analyses of comparative genomics data in Brassicaceae (crucifer) pla
143                                              Comparative genomics data indicate that these loci, and
144                      The recent explosion of comparative genomics data presents an unprecedented oppo
145 ating large-scale TRN models that integrates comparative genomics data, global gene expression analys
146 t exploits a matrix of pie charts to display comparative genomics data.
147 uce a software system for visual analysis of comparative genomics data.
148                           Here, we present a comparative genomics database named PIECE for Plant Intr
149                                              Comparative genomics datasets tend to be large and compl
150       The objective of this study was to use comparative genomics datasets to find unique target regi
151                                              Comparative genomics delineated 12 phage groups that (i)
152                                              Comparative genomics demonstrate conservation of glycine
153 rily, structure-based phylogenies coupled to comparative genomics demonstrate that plant DHNA-CoA thi
154                                              Comparative genomics elucidated evolutionary aspects, an
155                 The draft genome will aid in comparative genomics, epidemiological studies, and quara
156                            Interpretation of comparative genomics evidence suggests unexpected (nonba
157 er and its web server will contribute to the comparative genomics field by facilitating the study of
158                                              Comparative genomics for S. haematobium is feasible, giv
159 nsitive sequence and structure analysis with comparative genomics, for the first time we provide a co
160                                              Comparative genomics found 2,796 bat-accelerated regions
161                   Here, we develop a general comparative genomics framework to align isolated genomes
162                                              Comparative genomics from mitochondria, plastids, and mu
163                                              Comparative genomics has been a powerful tool for the di
164 luating their genome-wide occurrence through comparative genomics has consistently been plagued by hi
165                                              Comparative genomics has correctly predicted functions f
166                                              Comparative genomics has revealed a class of non-protein
167                                              Comparative genomics has suggested that the Orthopoxviru
168                                        While comparative genomics has uncovered how some of these evo
169       Two new features for data analysis and comparative genomics have been added to the site.
170 re-organization efforts are supported by the comparative genomics here, although several changes are
171                                              Comparative genomics identified differential distributio
172                                          Our comparative genomics identify that while plant biomass d
173 f marker development, map-based cloning, and comparative genomics in barley and related crops.
174  web server is a visualization tool allowing comparative genomics in four different phyla (Vertebrate
175 ficant advance in functional, structural and comparative genomics, in diagnostics, gene replacement,
176                                              Comparative genomics indicates the fumagillin/pseurotin
177                  Currently, there is limited comparative genomics insight into the evolution of dieta
178 alysis of complex crop genomes combined with comparative genomics is a powerful technique for novel g
179                        Our results show that comparative genomics is a powerful tool for identifying
180 te on insights into bacterial evolution from comparative genomics is provided in this review.
181                                              Comparative genomics is providing a mechanism to assess
182 s in an evolutionary context, as well as how comparative genomics is providing new insights into the
183                                              Comparative genomics is providing new opportunities to a
184     One of the key computational problems in comparative genomics is the reconstruction of genomes of
185         One of the outstanding challenges in comparative genomics is to interpret the evolutionary im
186 ment, which is of fundamental importance for comparative genomics, is a difficult problem and error-p
187  the Coulson plot format is highly useful in comparative genomics, its original purpose, the software
188                                Although such comparative genomics methods have proven useful in disco
189                                     Powerful comparative genomics methods, such as phylogenetic footp
190                                   Leveraging comparative genomics methods, we identify and experiment
191 ur interdisciplinary approach, incorporating comparative genomics, mutagenesis, enzyme kinetics, and
192                                              Comparative genomics of 13 Stammera strains revealed hig
193                                      We used comparative genomics of 224 temporal and spatial diverse
194                                              Comparative genomics of 70 total EPEC from lethal (LI),
195 ults highlight the advantages of integrating comparative genomics of closely related organisms with g
196                               We discuss the comparative genomics of different cancers, including mut
197 egrated resource for storage, annotation and comparative genomics of helminth genomes to aid in learn
198                                              Comparative genomics of modern isolates suggests that M.
199                            We have performed comparative genomics of prevalent GBS serotypes of India
200                                              Comparative genomics of the bacterial thiamin pyrimidine
201                                              Comparative genomics of the first sequenced biotrophic p
202 led genome from an acidic fen, and performed comparative genomics of the four Ca.
203                                              Comparative genomics of the so far uncultured cluster-2
204                                              Comparative genomics of these bacteria reveals putative
205 study reports the functional description and comparative genomics of two additional Dhc isolates and
206                                              Comparative genomics of two flatfish and transcriptomic
207                                              Comparative genomics of Vellore isolates was performed t
208 sults provide important resources for legume comparative genomics, plant breeding, and plastid geneti
209               To address this challenge, The Comparative Genomics Platform (CoGe) has developed two w
210                                  We report a comparative genomics platform for Eggerthella lenta and
211 CNSs were integrated in the PLAZA 3.0 Dicots comparative genomics platform together with new function
212 ryum case studies how using a combination of comparative genomics, population genomics, and transcrip
213 a are often applied to large-scale bacterial comparative genomics projects but the reconstruction of
214  samples, phylogenetic analysis, large-scale comparative genomics projects, and more.
215                         Integrating RNA-seq, comparative genomics, proteomics, and machine learning t
216 we released updated annotation (gene models, comparative genomics, regulatory regions and variation)
217                              A major goal of comparative genomics research is modeling changes in DNA
218 and updating reference genome annotation and comparative genomics resources.
219                                              Comparative genomics reveal a strong purifying selection
220                                              Comparative genomics revealed four distinct versions of
221                                              Comparative genomics revealed that B. cookei possessed s
222                            Phylogenomics and comparative genomics revealed that P. fructicola had und
223                                              Comparative genomics revealed that tandem duplication ev
224                                              Comparative genomics revealed that the main novel miRNA
225                                              Comparative genomics revealed that they are remarkably s
226                                              Comparative genomics reveals an unexpected diversity in
227 ate novel regulator of innate immunity using comparative genomics RNA interference screens in Caenorh
228  regulators of innate immunity, we performed comparative genomics RNA interference screens in the nem
229                                        Using comparative genomics, sequence and structure analysis, w
230                                              Comparative genomics show that these clusters are unlike
231                                              Comparative genomics showed that the mcr-1-carrying IncX
232 ication events, the rooted species tree, and comparative genomics statistics.
233 e gourd provides a useful resource for plant comparative genomics studies and cucurbit improvement.
234                                              Comparative genomics studies are growing in number partl
235                                       Recent comparative genomics studies have demonstrated that thre
236                                   While many comparative genomics studies have focused on gene flux a
237                                              Comparative genomics studies have revealed evolutionary
238  diverse phenotypes, is well-suited for such comparative genomics studies if new genomes, which cover
239                                              Comparative genomics studies in primates are restricted
240 have significantly expanded the database for comparative genomics studies in these bacteria.
241 hesis, we conducted genetic, cytological and comparative genomics studies on hps and pil genes in Nos
242 at prokaryotic genomes can now be generated, comparative genomics studies require a flexible method f
243  gene orders, to facilitate evolutionary and comparative genomics studies, as well as computationally
244 logous clusters is an important component of comparative genomics studies.
245 ding unseen opportunities and challenges for comparative genomics studies.
246 ly identify small proteins, we carried out a comparative genomics study on 1,773 human-associated met
247 rimental results and data newly obtained via comparative genomics support the idea that CheV function
248 ingle genome, which may be missed by current comparative genomics techniques due to their limitations
249   Here, we use large isolate collections and comparative genomics techniques, linked to phenotype stu
250 s the activity of viral suppressors of RNAi, comparative genomics, the development of detailed maps o
251 synthesize these insights with evidence from comparative genomics to argue that lncRNAs may have play
252                          We used large-scale comparative genomics to assess the genetic diversity, ph
253                                      We used comparative genomics to determine the conservation of th
254 -neutral sites providing great potential for comparative genomics to distinguish the signature of pur
255      We used a congenic breeding program and comparative genomics to exploit this variation in the ra
256                                      We used comparative genomics to identify a homologue of the pept
257                                      We used comparative genomics to identify a polymorphic (rs944458
258 s study illustrates the potential to exploit comparative genomics to identify enzymes and transcripti
259                            Recently, we used comparative genomics to identify MICU1 and MCU as the ke
260  draft genomes of other nematodes let us use comparative genomics to identify regulatory sequences di
261              Here we use genetic crosses and comparative genomics to identify specific regulatory DNA
262                                      We used comparative genomics to identify the coenzyme F430 biosy
263 en diverse tRNAs, structural information and comparative genomics to predict the impact of all possib
264 d the minimal SHFM1 critical region and used comparative genomics to select 26 evolutionary conserved
265                             Here, we applied comparative genomics to study 90 antimicrobial resistant
266                                      We used comparative genomics to study the evolution of prophages
267   The Miscanthus genome expands the power of comparative genomics to understand traits of importance
268 lymorphism data, AspGD hosts a comprehensive comparative genomics toolbox that facilitates the explor
269  new software provides a feature-rich set of comparative genomics tools for inspection of multiple ge
270                  In addition to scalability, comparative genomics tools must also provide user-friend
271 nced genomes, there is a need to provide new comparative genomics tools that can address the analysis
272 ience research community, providing powerful comparative genomics tools that help to link model syste
273                  In the current study we use comparative genomics, transcriptomics, and functional st
274  signaling in filarial worm taxis, we employ comparative genomics, transcriptomics, reverse genetics,
275                                      We used comparative genomics, transgenic mouse production, and m
276                                     However, comparative genomics using these species is hindered by
277 rse systems which counter this damage from a comparative genomics viewpoint.
278                         To investigate this, comparative genomics was performed on a collection of va
279 c mapping, in silico haplotype analyses, and comparative genomics we identified inositol polyphosphat
280                                        Using comparative genomics we identify a large class of eukary
281                               Finally, using comparative genomics, we compared our gene expression re
282 es combined with contextual information from comparative genomics, we computationally characterize ov
283                                           By comparative genomics, we confirmed that the strains isol
284                                        Using comparative genomics, we developed an efficient multiple
285                                        Using comparative genomics, we examined genetic diversity, tra
286                                   To support comparative genomics, we filled in divergence gaps in th
287                                        Using comparative genomics, we first established that duplicat
288                                        Using comparative genomics, we found a robust association betw
289                                        Using comparative genomics, we now show that CLYBL is strongly
290                                        Using comparative genomics, we predicted RbkR operator sites a
291                                     By using comparative genomics, we predicted SahR-binding DNA moti
292                                        Using comparative genomics, we show that genes have been added
293                                        Using comparative genomics, we show that genome dominance is h
294                  Using genome sequencing and comparative genomics, we show that the ooc gene cluster
295                    Phylogenomic analysis and comparative genomics were used to assess evolutionary re
296                               Here we couple comparative genomics with genetic and lipid analyses to
297 ferases were identified from tomato by using comparative genomics with known XyG galactosyltransferas
298                                              Comparative genomics with related genera reveals that th
299    High-resolution molecular karyotyping and comparative genomics with Setaria italica (L.) P.
300  We argue that it is essential to supplement comparative genomics with ultra-deep sampling of populat

 
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