ライフサイエンスコーパス: complete genome

1 apid amplification of cDNA ends obtained the complete genome.

2 ance in clinical samples at the level of the complete genome.

3 the compacted de Bruijn graph from a set of complete genomes.

4 ns, highlighting the importance of obtaining complete genomes.

5 sequencing have generated a large number of complete genomes.

6 release 71), ranging from a single record to complete genomes.

7 lay a very low frequency of cleavage even in complete genomes.

8 ven their robustness in identifying genes in complete genomes.

9 argeted sequencing approach produced 16 near-complete genomes.

10 database, which currently contains over 2100 complete genomes.

11 hment sequencing approach, producing 17 near-complete genomes.

12 ntifying orthologs among publicly available, complete genomes.

13 7,346 marine virome contigs that includes 44 complete genomes.

14 s - L. decidua, L. potaninii var. chinensis (complete genome 122,492 bp), and L. occidentalis (partia

15 se provides orthology predictions among 1621 complete genomes (1365 bacterial, 92 archaeal, and 164 e

16 This first completed genome (705 kb) for a human-associated TM7 phy

17 d us to conduct pairwise comparisons of 1197 complete genomes (780 eukaryotes and 417 archaea).

18 Complete genome analyses of 43 complete rotavirus genome

19 nts during bacterial infection, we performed complete genome analysis on three newly isolated multidr

20 Using complete genome analysis, we sequenced five bladder tumo

21 addition to presenting results of the first complete-genome analysis of the breakthrough infections

22 among SRMVs in a pattern similar to those of complete genome and the nucleoprotein (N) gene.

23 hand, we performed phylogenetic analyses of complete genome and VP1 capsid protein sequences.

24 demonstrated by an analysis of 555 Norovirus complete genomes and 2500 sequence fragments, where a re

25 Here we assemble complete genomes and large genomic fragments from both s

26 We recovered complete genomes and up to 43% of the genome from sample

27 In total, 9 new EBOV genomes (3 complete genomes, and an additional 6 >=50% complete) we

28 nonsupervised orthologous groups (NOGs) from complete genomes, and then applies a comprehensive chara

29 Complete genomes are attainable from 19(th) and early 20

30 Near-complete genomes, assembled de novo with paired-end and

31 With the ubiquitous generation of complete genome assemblies for a variety of species, eff

32 Here we report near complete genome assemblies for three Pneumocystis specie

33 e a web tool for genome assembly, SIMBA is a complete genome assemblies project management system, wh

34 molecule sequencing promises to deliver more complete genome assemblies with fewer gaps, concerns abo

35 ave a dual purpose: delivering a contiguous, complete genome assembly and creating a full catalog of

36 Here, we present a complete genome assembly of the skin commensal yeast Mal

37 These difficulties often delay the complete genome assembly projects.

38 nformatic tools are ushering in an era where complete genome assembly will become common for species

39 osa has been studied with the utility of its complete genome being sequenced coupled with well-establ

40 ncing of a deep aquifer, recovering two near-complete genomes belonging to the archaeal phylum Bathya

41 Storing and transferring complete genomes between computers for the purpose of ap

42 the genomic diversity of 433 isolates and 78 complete genomes (CGs) from six continents.

43 miRNA, 3747 snRNA, gene sequences from 9282 complete genome chromosomes of all prokaryotes and eukar

44 Here, we report a nearly complete genome co-assembly of three closely related sin

45 nt a protocol for generating coding-sequence-complete genomes, comprising an online primer design too

46 We apply this strategy to complete genome data from 47 wild and domestic pigs from

47 the 1000 Genomes Project, and deep coverage complete genome data from our own projects.

48 First, the near-complete genome data generated with the in-house pipelin

49 With complete genome data, it becomes possible to identify an

50 e on a global scale, however, information on complete genomes (DNA), transcriptomes (RNA) and proteom

51 This interaction is required for complete genome duplication in human cells.

52 Thus, numerous mechanisms exist to complete genome duplication in the absence of a pristine

53 lls possess numerous tolerance mechanisms to complete genome duplication in the presence of such impe

54 replication forks that may cause failure to complete genome duplication or result in possibly catast

55 igins along eukaryotic chromosomes, ensuring complete genome duplication within a single S-phase.

56 rganisation predicted to be insufficient for complete genome duplication within S phase.

57 e and fires approximately 100,000 origins to complete genome duplication.

58 is a tightly controlled process that ensures complete genome duplication.

59 Using the RNA-seq approach, we obtained a complete genome for one sample, which contained a recomb

60 scriptomic sequencing recover the first near-complete genomes for a novel methanogen species, and sho

61 d gene prediction, resulting in thousands of complete genomes for analysis.

62 rado River (USA) and reconstructed the first complete genomes for Archaea using cultivation-independe

63 ies that are typically unable to reconstruct complete genomes for individual organisms present within

64 urface aquifer metagenomic samples to obtain complete genomes for members of a new candidate phylum s

65 Complete genomes for six selected strains are reported,

66 Here, we present complete genomes for three distinct groups of viruses as

67 We acquired multiple near-complete genomes for two bacterial species from human or

68 LEFT-SEQ resulted in complete genomes for wBm and for wMau.

69 Assembling a complete genome from a single bacterial cell, termed sin

70 Using transcriptomes and complete genomes from 42 species, we applied a multipron

71 he genome coverage to include representative complete genomes from all bacterial and archaeal lineage

72 IMG integrates publicly available draft and complete genomes from all three domains of life with a l

73 n-independent recovery of 49 partial to near-complete genomes from an acetate-amended aquifer.

74 possibility of improving assemblies by using complete genomes from closely related species/strains.

75 Recovery rates of complete genomes from fragmented assemblies of single-ce

76 By sequencing 27 complete genomes from H1 and D8 genotype measles viruses

77 ults highlight the benefit of reconstructing complete genomes from metagenomic data and demonstrate m

78 Near-complete genomes from nine of these species show conserv

79 eline for EV-D68 that produced a total of 59 complete genomes from respiratory samples with a 95% suc

80 iversity of HPV6, using 724 isolates and 190 complete genomes from six continents, and the associatio

81 Brazil, we generated 18 complete and nearly complete genomes from the peak of the epidemic curve fro

82 ine lakes and present analysis of two nearly complete genomes from this group.

83 Complete genomes from two populations revealed a high de

84 Here, we report eight coding-complete genomes from US serum samples from 1978-1979-ei

85 representing orders of millipedes for which complete genomes had not been characterized.

86 The complete genome has also greatly expanded our understand

87 tions of >80 million sequences covering 2414 complete genomes, hundreds of meta-genomes, thousands of

88 y, the condition of possessing more than two complete genomes in a cell, has intrigued biologists for

89 eveloped to automatically annotate over 2500 complete genomes in a GenBank-compliant format.

90 merous ancient samples of maize, with nearly complete genomes in three samples.

91 17 of which represented by complete or near-complete genomes, in two North American freshwater lakes

92 The complete genome is 7,551 nucleotides in length, with pol

93 o larger size ssRNAs are recruited until the complete genome is packaging into the capsid.

94 While BGC prediction from complete genomes is a well-studied problem, predicting B

95 VGs to contribute to within-host spread, but complete genomes may be critical for transmission.

96 ry analysis, the mean evolution rate for the complete genome, N, P, M, F, H and L genes of SRMV was e

97 In this study, we performed complete-genome next-generation sequencing of 92 RSV iso

98 next-generation sequencing, we sequenced the complete genome of 100 Salmonella Bareilly isolates obta

99 Elucidation of the complete genome of a 1992 ST-1 strain revealed that this

100 We report a complete genome of a filamentous tropical marine cyanoba

101 The complete genome of a novel coronavirus was sequenced dir

102 te, we have now discovered and sequenced the complete genome of a third novel virus, Le Blanc virus,

103 st study that has successfully sequenced the complete genome of a virus of over 300 kbp from archival

104 ng and optical mapping approaches, a 24.1-Mb complete genome of an industrial strain, Monascus purpur

105 We also sequenced the complete genome of an isolate of DWV that covertly infec

106 ase (HN) and large polymerase (L) genes in a complete genome of an NDV isolate from this geographical

107 The sequencing of the first complete genome of an ST10 A. baumannii clinical strain

108 The complete genome of Cordyceps militaris was sequenced usi

109 Here we report the complete genome of Edwardsiella ictaluri 93-146.

110 wo distinct lineages, we sequenced the first complete genome of F. philomiragia strain ATCC 25017, wh

111 , during our isolation and sequencing of the complete genome of faustovirus, followed by the descript

112 The complete genome of HPV-SD2 is 7,299 bp long (36.3% G/C)

113 he development of lymphoma, we sequenced the complete genome of MneRV2 and identified 87 protein codi

114 Here we report a complete genome of one mammalian orthoreovirus (MRV) typ

115 revolutionized our capacity to sequence the complete genome of organisms, including from archaeologi

116 In the current report, we describe the complete genome of outbreak-associated aEPEC isolate E11

117 Here, the complete genome of strain JS3050 was sequenced and key g

118 from this individual also contained a nearly complete genome of the archaeal commensal Methanobreviba

119 The complete genome of the causative agent, a variant from t

120 We sequenced the complete genome of the DNA contained in the gourd at low

121 btained with individual reads and the nearly complete genome of the endosymbiotic bacteria Wolbachia

122 Here, we sequenced and assembled the complete genome of the ET-743 producer, Candidatus Endoe

123 peptides of 15 to 350 amino acids across the complete genome of the HPAI H7N7 A/Netherlands/33/03 vir

124 The coding-complete genome of the new virus, named Kanyawara virus

125 To this end, we sequenced the first complete genome of the obligate endosymbiont, Candidatus

126 In this report, we analyze the complete genome of the prototype RBV, strain M64.

127 The complete genome of this isolate, chicken/DominicanRepubl

128 We reconstructed a nearly complete genome of this phylotype from a soil metagenome

129 In this study, the complete genome of white spot syndrome virus (WSSV) was

130 The complete genome of ZIKV was recovered from the fetal bra

131 logenies using homologous gene families from complete genomes of 10 bacterial and archaeal groups.

132 Here, we sequenced the complete genomes of 11 PHs, representing all founding li

133 We sequenced the complete genomes of 123 IAV isolates and found 31 H1N1,

134 We analyzed the complete genomes of 16 naturally occurring infectious P-

135 Our results identified the complete genomes of 24 species of RNA viruses from a div

136 diversity of this parasite, we sequenced the complete genomes of 42 B. microti samples from around th

137 utosomal (X/A) nucleotide diversity with the complete genomes of 569 females from 14 populations.

138 We have sequenced the complete genomes of 72 individuals affected with early-o

139 We further obtained complete genomes of 8 Calycopis specimens: 3 C. cecrops

140 We sequenced complete genomes of 92 DENV-3 clinical isolates to chara

141 Compared with 20 other complete genomes of A. baumannii, LAC-4 genome harbors a

142 Here we report high-depth sequencing of 128 complete genomes of AJ controls.

143 WNV evolution and ecology, we sequenced the complete genomes of approximately 300 avian isolates sam

144 Using LSA, we assemble partial and near-complete genomes of bacterial taxa present at relative a

145 We present the complete genomes of Bifidobacterium animalis subsp. lact

146 Nearly complete genomes of Ca.

147 Comparison of complete genomes of closely related species enables rese

148 Here, we sequenced multiple complete genomes of dromedary camel coronavirus HKU23 (D

149 The complete genomes of each of the two variant strains were

150 conserved amino acids in dengue viruses, 120 complete genomes of each serotype were selected at rando

151 By analyzing the complete genomes of five plants we generated a database

152 Here, we present five such near-complete genomes of Marine Group IV archaea (Hikarchaeia

153 e genomes of 14 members of this complex: the complete genomes of Mycobacterium salmoniphilum and Myco

154 Here, we present the complete genomes of nine present-day Yakutian horses and

155 We found nearly complete genomes of novel species of astrovirus and cali

156 We analyzed 89 complete genomes of polar bear and brown bear using popu

157 We have generated 27 complete or nearly complete genomes of RSV from hospitalized children atten

158 We sequenced the complete genomes of seven infectious MLVs isolated from

159 We generated complete genomes of the type strains G. apicola wkB1(T)

160 petitive sequence elements and assembled the complete genomes of two co-extracted bacteria.

161 Reconstruction of near-complete genomes of two cooccurring SUP05 populations in

162 ologous gene families shared across multiple complete genomes of viruses that infect bacterial or arc

163 s from sequencing reads, draft assemblies or completed genomes of closely related organisms.

164 The system is built with 82 complete genomes organized into gene families and subfam

165 e current system (PANTHER v.14.0) covers 131 complete genomes organized into gene families and subfam

166 RNA splicing machinery for expression of its complete genome potentially makes it vulnerable to modul

167 The first two coding-complete genomes provided actionable information in real

168 In trees built from complete genomes rather than sets of core genes, we obse

169 On the basis of its reconstructed complete genome, RBG-1 is metabolically versatile.

170 Moreover, our sequencing data allowed near-complete genome reconstruction of five bacterial species

171 The complete genome reconstruction of WSSV (~ 305 kbp) was a

172 ubmitted to NCBI for integration into RefSeq complete genome records as link-out features, maximizing

173 s identified in T. monococcum, which lacks a complete genome reference sequence, by mapping the enric

174 Failure to complete genome replication and defective checkpoint sur

175 on of replication origins in yeasts promotes complete genome replication even in the presence of irre

176 We show that the probability of complete genome replication is maximized if replication

177 point, cds1Delta and mrc1Delta forks cannot complete genome replication.

178 ters the chromosome end replication problem, completing genome replication to prevent cellular senesc

179 Here we focus on the recovery of a nearly complete genome representing a novel strain of the perio

180 erial, sufficient sequence was available for complete genome resolution (up to 100%) within 10 min.

181 c sequencing led to the recovery of its near-complete genome, revealing the genes necessary for hydro

182 The analysis identified 72 partial or complete genome segments representing 66 previously unde

183 In this study, we report the complete genome sequence analysis of 58 RVs isolated fro

184 Blood, Morin et al report their findings on complete genome sequence analysis of primary diffuse lar

185 Here we present the complete genome sequence and the clinicopathological cha

186 Analysis of complete genome sequence data from island foxes shows a

187 estimated allele effects in conjunction with complete genome sequence data of the founder strains red

188 Analyses of publicly available complete genome sequence data show that haplotype N shar

189 Due to a lack of complete genome sequence data, there is only a limited u

190 The existence of a complete genome sequence for C. elegans and draft genome

191 We report the complete genome sequence of "Candidatus Mycoplasma haemo

192 and HHV-7.IMPORTANCE Herein we describe the complete genome sequence of a novel murine herpesvirus.

193 Here we report the first complete genome sequence of a serotype b non-JP2 strain

194 The complete genome sequence of an African Newcastle disease

195 We report the first complete genome sequence of an isolate (IND2004/01) of b

196 Here we report the first complete genome sequence of an isolate belonging to the

197 The complete genome sequence of an RNA virus was assembled f

198 Here, we report the complete genome sequence of Blattabacterium (BNCIN) harb

199 Here we report the complete genome sequence of Brucella suis VBI22, which w

200 We report the complete genome sequence of canine papillomavirus type 1

201 We report the complete genome sequence of canine papillomavirus type 9

202 A coding-complete genome sequence of EBOV that was isolated durin

203 Here, we present the complete genome sequence of F. columnare strain ATCC 495

204 Here, we report the complete genome sequence of four BATV strains (MM2222, C

205 Towards this goal, we have determined the complete genome sequence of LdCen (-/-) and its parent s

206 without DNA enrichment, we obtained the near-complete genome sequence of M. lepromatosis present in a

207 Herein, for the first time, the complete genome sequence of newly identified porcine ast

208 Here we present the complete genome sequence of Providencia stuartii MRSN 21

209 Here we report the complete genome sequence of Rahnella aquatilis CIP 78.65

210 Here, we present the complete genome sequence of S. mutans GS-5, a serotype c

211 We report the complete genome sequence of soybean Putnam virus (SPuV),

212 However, the complete genome sequence of the 68-1 BAC has not been de

213 Here, we report the complete genome sequence of the basidiomycete fungus Rig

214 We report the complete genome sequence of the Blattabacterium sp. asso

215 Here we report the complete genome sequence of the CaCV-1 strain NY214, whi

216 We report the complete genome sequence of the first polyomavirus to be

217 Here we report the complete genome sequence of the first strain of HEV from

218 The complete genome sequence of the isolate revealed that th

219 To this end, we characterized the complete genome sequence of the M16917 isolate and perfo

220 By the time the complete genome sequence of the soil bacterium Pseudomon

221 Here, we announce the first complete genome sequence of this organism.

222 s system, the complete cell lineage, and the complete genome sequence provide a framework to phrase a

223 Here the complete genome sequence, as well as DNA methylation pat

224 ce tags (ESTs) as the reference in lieu of a complete genome sequence.

225 The completed genome sequence reported here is the first for

226 r and Acidovorax genera for which there is a completed genome sequence.

227 arding the evolution of WEEV, we analyzed 33 complete genome sequences and conducted comprehensive ph

228 la Genetic Reference Panel inbred lines with complete genome sequences and for which phenotypes of ma

229 at founded the global pandemic, and very few complete genome sequences are available from patients in

230 As more complete genome sequences become available, bioinformati

231 ly small genomes (e.g., bacterial or viral), complete genome sequences can frequently be reconstructe

232 Samples of multiple complete genome sequences contain vast amounts of inform

233 Phylogenetic analysis of complete genome sequences found evidence for two distinc

234 Each NGS method generated near-complete genome sequences from more than 90% of samples.

235 sviruses, a notion supported by more than 60 complete genome sequences from multiple isolates and fol

236 hat for common bacterial species, where many complete genome sequences from related strains have been

237 dy present in the Upper Paleolithic, we used complete genome sequences from Sunghir, a site dated to

238 g genomic information that can be partial or complete genome sequences from the same or a related org

239 Here, we present high-quality complete genome sequences from two woolly mammoths (Mamm

240 We analysed a data set of 334 near-complete genome sequences from various risk groups, samp

241 We report here the complete genome sequences of 138 new mycobacteriophages,

242 In this study, we report the nearly complete genome sequences of 34 HSV-2 low-passage-number

243 Here we analyze the complete genome sequences of 863 human tumors from The C

244 We obtained complete genome sequences of CCHFV directly from the tic

245 we doubled the number of publicly available complete genome sequences of EV-D68 by performing high-t

246 e information derived from over 1,300 (near-)complete genome sequences of HCV available on public dat

247 This is the first report of complete genome sequences of NDV strains isolated from c

248 Here we report the first complete genome sequences of Ngari virus.

249 t-generation DNA sequencing has revealed the complete genome sequences of numerous organisms, establi

250 ensively analyzed 2,492 complete and/or near-complete genome sequences of SARS-CoV-2 strains reported

251 The complete genome sequences of several plant-associated ba

252 A string of complete genome sequences of Small ruminant morbilliviru

253 Thanks to the availability of complete genome sequences of species representing import

254 , we first enriched the existing database of complete genome sequences of SRMVs with Pakistan-origina

255 These two complete genome sequences of the type strain of S. pyoge

256 Here we report two complete genome sequences of this bacterium from the B a

257 The complete genome sequences of two NDV strains and the seq

258 4,023 species with known complete or almost complete genome sequences on grouping and kinship among

259 Analysis of complete genome sequences or concatenated ORF1/ORF2 amin

260 riophages have been described and over 3,000 complete genome sequences reported, resulting from large

261 The basal branching of some of the complete genome sequences that we recovered suggests tha

262 A multiple alignment of the 32 complete genome sequences was filtered to remove mobile

263 Complete genome sequences were obtained from six of the

264 Complete genome sequences were obtained from three to de

265 The complete genome sequences, 72 shared genes, matK gene, a

266 plex mixed virus sample and the retrieval of complete genome sequences.

267 ass or in other monocotyledonous plants with complete genome sequences.

268 organisms owing to the ready availability of complete genome sequences.

269 The recently completed genome sequences of several plant species have

270 Complete genome sequencing demonstrated that PRV G9P[13]

271 Complete genome sequencing of all members of the genus a

272 Complete genome sequencing of five isolates confirmed th

273 Recent advances in transcriptomics and the complete genome sequencing of mosquito vectors have incr

274 We developed a high-throughput complete genome sequencing pipeline for EV-D68 that prod

275 Complete genome sequencing revealed that the isolate doe

276 Complete genome sequencing revealed the phage was a nove

277 tance, conifers seemed long out of reach for complete genome sequencing, due in part to their enormou

278 ase and identified by using metagenomics and complete genome sequencing.

279 in the DRC, we identified rare variants for complete genome sequencing.

280 contains annotations for 63 244 and 102 151 complete genomes taken from UniProtKB and NCBI respectiv

281 ed in the host interaction.In the absence of complete genomes, the metabolic capabilities of uncultur

282 genomic reads resulted in five novel, nearly complete genomes, three of which had features similar to

283 nome-scale operons for 2072 prokaryotes with complete genomes, three times the number of genomes cove

284 over 600 Herpesvirales and 2000 Caudovirales complete genomes to search for the presence or absence o

285 otprinting framework; (ii) 2125 species with complete genomes to support the above five functions, co

286 they rely upon, and, because of the lack of complete genomes, to what extent.

287 e omics studies of R. opacus PD630 including complete genome, transcriptome and proteome analysis.

288 n this study, we report the sequencing of 58 complete genomes using PacBio RS II sequencing technolog

289 igate the deep evolutionary history of HPV58 complete genome variants.

290 volutionary genomics pipeline to compare 208 complete genomes, we analyze the gene content of the anc

291 y complete ( approximately 99%) and two near-complete genomes were assembled for bacteria that compri

292 species in the Chrysovirus genus, and nearly complete genomes were found in three ancient maize sampl

293 Complete genomes were obtained for 65/80 samples from 38

294 Near-complete genomes were reconstructed for these bacteria.

295 Four high-quality (63-90% complete) genomes were obtained from White Oak River est

296 NGS produced 14 new complete genomes, which included pure subtype C (n = 2),

297 We recovered near-complete genomes, whose phylogeny matched those of the p

298 We analysed all enterovirus A71 complete genomes with collection dates from 2008 to mid-

299 d Oxytricha macronuclear genome is the first completed genome with such an unusual architecture.

300 tiassembly and enables the discovery of more complete genomes, with lower error rates, whereas multia