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1 ind individual modules within a compound DNA consensus sequence.
2 length requirements and its phosphorylation consensus sequence.
3 r of ZF3-7 contacts three bases of the 15-bp consensus sequence.
4 scanning by Miz-1 during the search for its consensus sequence.
5 ome, and the sequence data generally yield a consensus sequence.
6 p53 binding site deviates from the canonical consensus sequence.
7 -generation sequencing in conjunction with a consensus sequence.
8 and an oligonucleotide complementary to the consensus sequence.
9 number of reads required to make a template consensus sequence.
10 tical to the modern North American subtype B consensus sequence.
11 omain of FOXM1 that inhibit binding to a FKH consensus sequence.
12 gulate target genes containing the CCAAT box consensus sequence.
13 l dsRNA duplex containing an OAS1 activation consensus sequence.
14 CRP(Mt) binding overlapped a palindromic consensus sequence.
15 a consequence, CDA-KLF1 did not bind the WT consensus sequence.
16 lerant recognition of other positions of the consensus sequence.
17 own TE families each represented by a single consensus sequence.
18 e O-glycosylation site is not within a known consensus sequence.
19 importance of the conserved bases within the consensus sequence.
20 sirtuins in yeast and found a shared target consensus sequence.
21 han half of which conform to a PKA substrate consensus sequence.
22 ma membrane, although it lacks a PDZ binding consensus sequence.
23 sequences can be thought of as generating a consensus sequence.
24 bility, as well as a set of highly permeable consensus sequences.
25 alternative splicing through binding to RNA consensus sequences.
26 moter mutations that create or disrupt GABPA consensus sequences.
27 and a bioinformatics pipeline for generating consensus sequences.
28 signals surrounding the exon to better match consensus sequences.
29 lecule and allows for efficient formation of consensus sequences.
30 in vivo often bind DNA regions lacking known consensus sequences.
31 s Pim and AKT protein kinase phosphorylation consensus sequences.
32 le sequencing strategies, including circular consensus sequencing.
36 binds to over 500 operator regions with the consensus sequence 5'-TGGCSNGWWY-3' (where S is G or C,
39 th this approach, we can achieve an improved consensus sequencing accuracy of 99.7% and resolve intra
41 eractions compensate for deviations from the consensus sequence, allowing CTCF to adapt to sequence v
44 role of Miz-1 ZFs 1-4 in detecting the Miz-1 consensus sequence and preventing nonspecific DNA bindin
45 et of promoters that contain the methylation consensus sequence and show that loss of methylation wit
46 ural DNA sequences conforming to the class I consensus sequence and structure were found that undergo
47 grouped 2.9-12.8% of participants when using consensus sequences and 9.0-64.2% when using haplotypes.
48 9CA-CFTR, mutants that lack 15 PKA or 9 PKC consensus sequences and are unresponsive to PKA or PKC s
49 ommon secondary structure motif but distinct consensus sequences and positions within the respective
50 lated IMPs (ZBP1 and IMP2) bind to different consensus sequences and regulate targets consistent with
51 we generated de novo jockey retrotransposon consensus sequences and used phylogenetic tree-building
52 ferase reporter assays was dependent on Smad consensus sequences and was partially dependent on endog
53 uencing methodology based on PacBio circular consensus sequencing and the DADA2 sample inference meth
54 virus), between human hosts (3978 SARS-CoV-2 consensus sequences), and within human hosts (401 deeply
55 T387 lies in a cyclin-dependent kinase (CDK) consensus sequence, and CDK inhibitors decrease T387 pho
56 amino acid composition of the glycosylation consensus sequence, and cellular localization of target
58 aty-1 elements identical to their respective consensus sequence, and the presence of polymorphic elem
59 s, finding pairs of binding sites based on a consensus sequence, and, in some cases, identifying endo
60 ragment that contains two strong Gli-binding consensus sequences, and mutation of either site abrogat
61 ors recognize the same response element (RE) consensus sequences, and their transactivation of target
63 f AP-1 reporters occurred in a ligand-, AP-1 consensus sequence-, and AP-1 family member-specific man
66 i-partite nature of the ICP4 DNA recognition consensus sequence as the globular and disordered region
67 DNA binding domain complexed to the putative consensus sequence as well as an adjoining secondary seq
68 dress this, we developed a new single-strand consensus sequencing assay for the determination of HIV
70 f RNAs were identified that deviate from the consensus sequence at one or more of three positions dir
71 ignificantly better than those harboring the consensus sequence at this site, resulting in reduced re
72 lution that could be readily performed using consensus sequences available for other satellite famili
73 E. coli population in the samples, and build consensus sequences based on population allele frequency
74 at IRF8 is recruited to distinct sets of DNA consensus sequences before and after lipopolysaccharide
75 In this study, we found that the interferon consensus sequence binding protein (Icsbp/Irf8) was requ
76 ry factor 8 (IRF8), also known as interferon consensus sequence-binding protein, directly targets a l
77 Tyr126, which is part of the choline-binding consensus sequence but is found in direct contact with t
78 mediate transcriptional repression via Insv consensus sequences but that the ELBA complex appears to
79 tive elastin peptides presents the XGXPGXGXG consensus sequence, but the reason for their bioactivity
80 domains usually interact with a proline-rich consensus sequence, but the region of paramyosin that in
81 ic biology approach to demonstrate that this consensus sequence can direct acetylation and deacetylat
83 ed that 9 of 12 TSRs with the O-fucosylation consensus sequence carried the Glucosebeta1-3Fucose disa
85 activate the eight variants of the 7-bp SMRE consensus sequence, composed of ACC(A/T)A(A/C)(T/C).
86 The method reproducibly generated the same consensus sequence, consistently identified viral sequen
87 hat specifically recognizes an 11-nucleotide consensus sequence consisting of two motifs in the promo
92 nts are predicted by realigning an assembled consensus sequence created from sequence reads that were
95 obacter jejuni favors acceptor proteins with consensus sequences ((D/E)X1NX2(S/T), where X1,2 not equ
96 show that identified TTBK2 phosphosites and consensus sequence delineated from those are distinct fr
97 upstream of sco3205 and a pseudopalindromic consensus sequence derived from these enables further po
98 omologies revealed threonine at this site in consensus sequences derived from multiple-species alignm
100 of accumulation of mutations in the genomic consensus sequence deviated slightly from linearity, and
101 c function RNA polymerase sigma factor RpoE2 consensus sequences displayed a sharp peak between -34 a
102 ausing occurs at sequences that resemble the consensus sequence element for transcription-elongation
103 nal exons and demonstrate a graded series of consensus sequence elements of varying strengths that se
105 the AUG to improve their match to the Kozak consensus sequence enhanced Vhs cutting near the start c
106 ster than the existing pipelines, though the consensus sequence error rate is as high as raw reads.
107 two arginine residues directly recognize the consensus sequence, explaining the strict recognition of
108 NAviz implements a framework for determining consensus sequence features and can generate sequence fe
109 around the intron boundary and displays the consensus sequence features for all introns, small intro
112 of CAMTA1-mutant mice, and elucidation of a consensus sequence for binding of CAMTA proteins to DNA
114 an intrinsic RNase activity and a potential consensus sequence for endonucleolytic cleavage identifi
116 o that of peptides, and the requirement of a consensus sequence for N-glycosylation further limits th
117 e-1 repeats (TSRs), six of which contain the consensus sequence for O-fucosylation by protein O-fucos
119 ed genes in the sigH regulon with a putative consensus sequence for SigH binding that was recognized
120 transcribed from promoters containing a new consensus sequence for the human initiator (Inr) core pr
121 recognize several DNA substrates without the consensus sequence for YY1 in vitro, and DNA binding is
123 we attempt to assess generality by designing consensus sequences for a set of six protein families wi
124 As seemed to be replicated and 80% contained consensus sequences for autonomous replication origins t
129 genome were sufficient to provide functional consensus sequences for the THAP domains, they do not sp
132 em repeat patterns and generate high-quality consensus sequences from amplified tandemly repeated lon
133 g; however, user-friendly software for build consensus sequences from molecule tagged reads is not re
136 gnments including >110 000 HIV-1 partial pol consensus sequences from the UK HIV Drug Resistance Data
137 t associated with decreased infectivity, and consensus sequencing from tissues revealed no evidence o
138 ecognizes an alternative forkhead-like (FHL) consensus sequence (GACGC) that is different from the mo
139 cted by merging homologous loci into single "consensus" sequences, generally absent from nature.
143 ing a variety of ligands, two different AP-1 consensus sequences, GR and MR DNA-binding domain mutant
146 erved within the first nuclear export signal consensus sequence identified in Saccharomyces cerevisia
147 eavage was dependent on the presence of a GG consensus sequence immediately before the cut site and a
148 mpensate to some extent for changes from the consensus sequence, implying an adaptability of PRDM9 to
149 cific promoter region featuring an NF-kappaB consensus sequence in a relevant subset of K17- and Aire
150 ly shifted from the previously reported CtrA consensus sequence in Caulobacter crescentus Bacterial o
153 e-like CD8(+) T cells from patients with the consensus sequence in the corresponding T-cell epitope d
155 n the human genome, with deviations from the consensus sequence in the spacing, orientation, and exte
156 g to a putative antioxidant response element consensus sequence in the sterol regulatory-element bind
157 e report the role of a newly identified AP-1 consensus sequence in the TF gene promoter and its origi
158 mediated increased binding of Sp1 to the Sp1 consensus sequence in the Wnt9A promoter, shown by oligo
160 adds Glucosebeta1-3Fucose disaccharide to a consensus sequence in thrombospondin type 1 repeats (TSR
161 e the role(s) of individual cysteines of the consensus sequence in various properties of Env7 in vivo
170 ious lengths located between the -10 and -35 consensus sequences in the tp0126 promoter modulates tra
171 reviously described LXVP calcineurin-binding consensus sequence, increased the calcium-sensitivity of
173 wintrons) are introns where any of the three consensus sequences involved in splicing is interrupted
174 uences such as 3'-TCC, TTC, and TTT, and the consensus sequence is 3'-Pu(Py)2-3 Based on our studies,
175 uggest that evolutionary conservation in the consensus sequence is driven by maintenance of the cleav
178 However, we show here that the palindromic consensus sequence is not present in individual integrat
180 d variants of the aptamers revealed that the consensus sequence is responsible and sufficient for bin
185 deler2 identified approximately 3 times more consensus sequences matching with >95% sequence identity
188 ivergent PARP homology domain missing a PARP consensus sequence motif; the domain has enigmatic funct
190 1 brain promoter (ncx1-Br) has five putative consensus sequences, named Sp1A-E, for the specificity p
194 nants we generated a SOSIP trimer based on a consensus sequence of all HIV-1 group M isolates (ConM).
195 ced is computationally processed to obtain a consensus sequence of all linked copies of the original
196 )), an amyloid-like peptide extracted from a consensus sequence of amyloidogenic proteins, which asse
197 the cleavage specificity of SBT4.13 and the consensus sequence of Arabidopsis SBTs at the junction o
198 the phosphothreonine residue of the pT-X-pY consensus sequence of ERK and p38 into Dhb and followed
200 ine the genetic differences responsible, the consensus sequence of L10 was determined and compared to
205 tein gene with a low-fusion RSV subgroup B F consensus sequence of the Buenos Aires clade (BAF).
206 ed samples had a 12 nucleotide insert in the consensus sequence of the spike gene, and multiple point
208 or ToxR-dependent toxT activation revealed a consensus sequence of TNAAA-N(5)-TNAAA extending from -9
209 ovariance and fall into two classes with the consensus sequences of (D/E)EPIYvarphiXvarphi and (D/E)(
210 , while no heterogeneity was observed in the consensus sequences of additional genomic RNA segments.
212 s, but their sequences are inconsistent with consensus sequences of known HEAT modules, suggesting th
213 ucose occurred at high stoichiometry at most consensus sequences of NOTCH2 and that the Fringe enzyme
214 ides, HEAT_R1 and LRV_M3Delta1, based on the consensus sequences of single repeats of thermophilic HE
215 at which there were differences between the consensus sequences of the 2 linked viral genomes, 9 had
216 ull viral genome sequencing showed identical consensus sequences of the virus before and after cell c
217 Sporadic mutations were detected in the consensus sequences of the viruses after high-MOI passag
220 Although a number of pooling strategies for consensus sequencing of DNA samples and detection of SNP
221 t augmented binding on cAMP response element consensus sequence on peroxisome proliferator-activated
223 NA immunization with either a single HIV Env consensus sequence or multiple constructs expressing HIV
224 er alignments that displays motifs, as IUPAC consensus sequences or position frequency matrices, in t
225 utating BDF2 5' splice site and branch point consensus sequences partially suppresses the bdf1Delta t
229 ubstantial tolerance for deviations from the consensus sequence, plus requirements at some positions
231 ctor U2AF(65) normally recognizes a Py tract consensus sequence preceding the major class of 3' splic
232 ized, on the basis of an Akt phosphorylation consensus sequence present in HK-II, that Thr-473 is the
233 a strain-DBN coding sequence, modified NS5B consensus sequence, pS52 untranslated regions, and codin
234 our data show that the previously described consensus sequence PXRPXR for amphiphysin SH3 ligands is
235 ncy, we find a highly enriched messenger RNA consensus sequence, R-motif, consisting of mostly purine
238 beta from wheat, OsRca-beta from rice, and a consensus sequence representing Rca from warm-adapted sp
239 entification of the class of RNA cleaved and consensus sequences required for accurate substrate reco
241 reads derived from at least 7 full circular consensus sequencing rounds significantly reduced the in
243 nown about influenza evolution has come from consensus sequences sampled at the epidemiological scale
244 am produces a 2.9% increase in coverage over consensus sequence search methods on a large human bench
246 opy studies and binding studies with mutated consensus sequences showed that the sequence was importa
249 protein complex that binds the NF-kappaB DNA consensus sequence, strengthening the idea of an associa
250 oration of the contemporary strain epitope D consensus sequence STT improved ligand binding relative
251 A that extends beyond the proposed canonical consensus sequence suggesting a more complex level of re
252 ock wild-type MYOD1 function and bind to MYC consensus sequences, suggesting a possible switch from d
253 ate strand bases of a conserved -10 element (consensus sequence T-12A-11T-10A-9A-8T-7) is an importan
254 5-46(G54W) arising from mutations in a gp120 consensus sequence, targets a common route of HIV-1 esca
256 en access a site 40 residues distal from the consensus sequence that collectively direct phosphorylat
257 Point centromeres are specified by a short consensus sequence that seeds kinetochore formation, whe
258 species of Drosophila, we discovered a 29-bp consensus sequence that we designated as the Clock-Assoc
260 biosensors for diverse ligands and determine consensus sequences that enable ligand-responsive tertia
261 The repeat was reconstructed into three consensus sequences that formed three interconnected loo
262 Human genomes are typically assembled as consensus sequences that lack information on parental ha
264 ach of the six early proteins and generating consensus sequences to represent five hrHPV genotypes.
265 only two tRNA isoacceptors containing the GG consensus sequence, tRNA(Gln32-CUG) and tRNA(Leu3-CAG).
266 , and its promoter contains all the putative consensus sequences typical of eukaryotic promoters, bei
267 onserved heptapeptide repeats containing the consensus sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7.
268 describe valuable data that are missing from consensus sequences, variable effects on sequence data g
269 r domain, and we characterize its tripartite consensus sequence via SELEX (systematic evolution of li
271 th high specificity and affinity to the WRKY consensus sequence (W-box), and also to its own promoter
273 nstructs expressing HIV subtype-specific Env consensus sequences, we detected both CD4(+) and CD8(+)
274 , Miz1-4(WT) was found to bind the Miz-1 DNA consensus sequence weakly and through ZFs 1-3 only.
275 ACE-PCR), and strong sigma(54) and sigma(70) consensus sequences were identified at PampR and PampC,
278 (strains DH8 and DH10), and 2c (strain S83) consensus sequences, were viable in Huh7.5 hepatoma cell
280 to the secondary wall MYB-responsive element consensus sequence, which encompasses the AC elements, t
281 s resulted in the identification of a G-rich consensus sequence, which was able to fold in a typical
282 ified and validated a putative RpoE promoter consensus sequence, which was enriched in the majority o
283 ine phosphorylation within the RNP1 and RNP2 consensus sequences, which coordinate RNA binding - sugg
284 olishing tool, Racon, generates high-quality consensus sequences while providing a significant speedu
285 ese tandem sequences can be collapsed into a consensus sequence with a higher accuracy than the origi
286 in of latent transcript of CyHV-3 contains a consensus sequence with homology to a conserved domain o
287 The hypothetical protein of ORF6 contains a consensus sequence with homology to a conserved domain o
288 , E6 binds to a short leucine (L)-rich LxxLL consensus sequence within the cellular ubiquitin ligase
290 ral native glycoproteins are known to harbor consensus sequences within structured regions of the acc
291 that 6 of the genes contained HP1043 binding consensus sequences within the promoter regions (fur, ca
292 ard unique molecular identifier (UMI)-linked consensus sequencing workflow (UMIC-seq) that simplifies
294 identified a novel conserved region with the consensus sequence WWxxRxxLD predicted to be exposed on