ライフサイエンスコーパス: consensus sequence for

1 predicted Arabidopsis promoter sequences and consensus sequences for 105 previously characterized tra

2 PCP consensus sequences for 27 species were prepared from 92

3 Consensus sequences for 5' and 3' splice sites and branc

4 nactive X chromosome) showed footprints at a consensus sequence for a CCAAT box, two weak Sp1 sites,

5 Generation of a consensus sequence for a contig is based on an alignment

6 ed expression of the Ly-6E.1 gene and that a consensus sequence for a gamma-IFN-responsive element lo

7 nontoxic ingredients of the Celiac diet.) No consensus sequence for a high-affinity substrate of tTGa

8 holipase C-gamma1 (PLC-gamma1) that fits the consensus sequence for a mitogen-activated protein kinas

9 The amino acid consensus sequence for a molybdenum cofactor binding sit

10 This PDE contains the consensus sequence for a PDE catalytic domain, but share

11 with the intraperoxisomal localization, the consensus sequence for a peroxisomal-targeting signal 1

12 Intriguingly, this region harbors a consensus sequence for a phosphate-binding loop which is

13 The IR region contains a consensus sequence for a protein (Pur), which binds pref

14 ast eight nucleotides of the 81 bases form a consensus sequence for a splice acceptor site.

15 The mutation destroys the only consensus sequence for a splicing branch point in intron

16 en cysteine residues, eight of which fit the consensus sequence for a Zn(2+)-binding RING domain.

17 ntical to those from honey bee tissues and a consensus sequence for A. mellifera.

18 f a TATA-less housekeeping gene promoter and consensus sequences for a number of potential DNA-bindin

19 we attempt to assess generality by designing consensus sequences for a set of six protein families wi

20 We examined the virus genomic consensus sequences for a total of 37 full-length viral

21 e divergence distributions, phylogenies, and consensus sequences for Alu elements in primates includi

22 the recent identification of an RNA binding consensus sequence for AMV and ilarvirus coat proteins,

23 he primate germline by deriving a primordial consensus sequence for an Alu repetitive element which i

24 s had mutations within a domain containing a consensus sequence for an SH3-binding protein.

25 The process for deriving PCP-consensus sequences for any group of aligned similar seq

26 er sequence consistent with an SP-1 site and consensus sequences for AP-1 and AP-2 enhancer elements,

27 A consensus sequence for Arc binding identifies several ad

28 ection method (SELEX) that revealed an 18-bp consensus sequence for Atf1-Pcr1 binding, 5'-GNVTATGACGT

29 We determined a general phosphorylation consensus sequence for ATM and identified putative in vi

30 ino acid cassette (A1) containing the Walker consensus sequence for ATP binding is replaced by a 24 a

31 members of a protein family that contains a consensus sequence for ATP binding, and purified PA700 e

32 As seemed to be replicated and 80% contained consensus sequences for autonomous replication origins t

33 articularly, this mutation is located in the consensus sequence for beta-adrenergic-activated protein

34 oter unveiled the presence of seven putative consensus sequences for beta-catenin/TCF4 binding, two o

35 Overlap of this motif with the consensus sequence for binding of Ca2+ channel beta subu

36 y related to the cAMP response element (CRE) consensus sequence for binding of cAMP-responsive transc

37 of CAMTA1-mutant mice, and elucidation of a consensus sequence for binding of CAMTA proteins to DNA

38 tein of the C terminus of SERCA1 indicated a consensus sequence for binding of XpYGSS; this is identi

39 The ybaW gene, which has a putative consensus sequence for binding the fatty acid degradatio

40 The latter two, which possess the consensus sequence for binding to PDZ domains (T/S-X-V-o

41 acid residues and thus matched very well the consensus sequence for binding to SH2 domains of src fam

42 idues (underlined) similar to the C-terminal consensus sequence for binding to syntrophin PDZ domains

43 s in the pro-domains of the PC family, and a consensus sequence for binding to the catalytic domain i

44 The woodchuck TNF gene promoter contains consensus sequences for binding of AP-1, AP-2, C/EBPbeta

45 ith sequence alignments allowed deduction of consensus sequences for binding of both proteins.

46 ns also possess similar, cysteine-containing consensus sequences for binding PDZ domains, this disulf

47 nking revealed the presence of multiple near consensus sequences for binding potential transcriptiona

48 ifs essential for initiation of replication: consensus sequences for binding the bacterial DnaA prote

49 Consensus sequences for binding these three transcriptio

50 an overlap of 158 amino acids, and contained consensus sequences for binding zinc, stabilizing the bi

51 Consensus sequences for both H1 histone-specific promote

52 rption ionization mass spectrometry revealed consensus sequences for both SH2 domains.

53 Furthermore, the WXXW motif is known to be a consensus sequence for C-mannosylation.

54 Several ADAMTSL2 TSRs also have consensus sequences for C-mannosylation.

55 Two consensus sequences for c-myc in the 5' flanking region

56 ic peptides containing the His-Ala-Val (HAV) consensus sequence for cadherin dimerization also attenu

57 uences for heat shock proteins, and the RRAS consensus sequence for cAMP-PKA substrates.

58 nd intracellular loop (IL2) of SERT contains consensus sequences for cGMP-dependent protein kinase an

59 The results establish a consensus sequence for chemoreceptor methylation sites i

60 e 1) Thr-382 is contained within a canonical consensus sequence for CKII phosphorylation and 2) wild

61 y of TAP-B-linked molecules diverge from the consensus sequence for class la molecules whereas, at th

62 This sequence conforms to the consensus sequence for cleavage by members of the furin

63 The Deformed binding sites do not have the consensus sequence for cooperative binding with the cofa

64 fs within its C-terminal region, including a consensus sequence for cortactin SH3 domain-binding pept

65 Based on this information, we propose a consensus sequence for CovR binding to DNA.

66 The consensus sequences for CspB, CspC and CspE are U/T stre

67 Here, we used a consensus sequence for Dbl domains of Rho guanine nucleo

68 The program searches for clusters of the consensus sequence for DNA binding within a window (leng

69 h PrrA binds in vitro, to further define the consensus sequence for DNA binding.

70 ding the DSBs has led to the derivation of a consensus sequence for DSB formation.

71 t is distinct from the previously identified consensus sequence for E. coli and S. enterica.

72 The consensus sequence for each conserved region is as follo

73 ere sequenced and used to derive DNA-binding consensus sequence for each member.

74 Each laboratory generated a consensus sequence for each sample and completed a quest

75 -site-selection experiments, we identify the consensus sequence for each subsite.

76 types, except for B', in comparison with the consensus sequence for each subtype.

77 equences are then used to create an accurate consensus sequence for each template, correcting for rec

78 A consensus sequence for each type of motif was determined

79 The consensus sequences for each N-linked site were mutated

80 quences were clustered and assembled to form consensus sequences for each organism, and these assembl

81 otal coding sequence DNA), distribution, and consensus sequences for each species present in IDB.

82 as not predicted by the previously developed consensus sequence for EBNA1's binding DNA.

83 POBEC3F and APOBEC3G have a different target consensus sequence for editing, and importantly, APOBEC3

84 The consensus sequence for efficient bypass of tetrahydrofur

85 an intrinsic RNase activity and a potential consensus sequence for endonucleolytic cleavage identifi

86 e Phe/Gly repeat domain which display common consensus sequences for ERK and p38 substrates.

87 Three of the sites have the consensus sequence for ERK1 phosphorylation, and additio

88 A motif search algorithm was used to derive consensus sequences for ESEs recognized by these SR prot

89 ormatic approaches, we have identified three consensus sequences for forkhead transcription factor bi

90 This region is highly GC-rich containing the consensus sequence for four Sp1 elements (GGGCGG) and th

91 transcription start site, and which contain consensus sequences for GATA and interferon regulatory f

92 tified here as Thr231 and Ser235, are within consensus sequences for glycogen synthase kinase 3 (GSK-

93 ffected by tunicamycin or elimination of the consensus sequence for glycosylation at Asn70.

94 monstrated that Thr143 serves as part of the consensus sequence for glycosylation at N141, and it is

95 This substitution alters the predicted consensus sequence for glycosylation, Asn-X-Ser, adjacen

96 osaccharides from SP-A by mutagenesis of the consensus sequences for glycosylation had no effect on b

97 egions deviate significantly from recognized consensus sequences for Group I introns.

98 phosphorylation at Ser204, fitting the known consensus sequence for GSK3 substrates.

99 Thus, despite the lack of a -35 consensus sequence for H. pylori promoters, the -35 regi

100 hin the collagen tail of AChE, there are two consensus sequences for heparin binding of the form BBXB

101 sidues that exactly or nearly match proposed consensus sequences for heparin-binding domains (HBDs);

102 Identification of the consensus sequences for HMGA2 represents an important st

103 nt (SELEX) procedure, we have identified two consensus sequences for HMGA2, 5'-ATATTCGCGAWWATT-3' and

104 We also found a weak consensus sequence for host DNA at integration sites, an

105 A confident consensus sequence for Hsmar1, the first mariner transpo

106 domain of Notch or its homologs contain the consensus sequence for hydroxylation.

107 atalytic site of PDE, near the NKXD motif, a consensus sequence for interaction with the guanine ring

108 Here, we report a novel consensus sequence for interaction with the PDZ-1 and PD

109 GluR1 possesses a C-terminal consensus sequence for interactions with PDZ domains of

110 ge site is next to four arginine residues, a consensus sequence for intracellular subtilysin type pro

111 to A transition mutation is within a splice consensus sequence for intron 1.

112 3' boundary, in agreement with the proposed consensus sequence for intron spliced donor and acceptan

113 A subset of Six1-bound sites carry consensus-sequences for its downstream factors, includin

114 ins a highly conserved B30.2 motif, multiple consensus sequences for kinases, and post-Golgi sorting

115 This docking site conforms to the consensus sequence for known D-sites in other MKKs and c

116 er region indicated the presence of putative consensus sequences for known hypoxia-responsive regulat

117 tified ERSR cis-element, nor do they contain consensus sequences for known transcription factors.

118 , and possibly, a third region containing no consensus sequences for known transcription factors.

119 DR499Wp contains an NES that conforms to the consensus sequence for leucine-rich NESs.

120 gnal peptide terminated by LLISC, a probable consensus sequence for lipoprotein modification, and a m

121 gnal peptide terminated by LFVAC, a probable consensus sequence for lipoprotein modification, and a m

122 This region of the gene also contains consensus sequences for liver-enriched transcription fac

123 the microarray analysis revealed a putative consensus sequence for M. tuberculosis SigM of -35 GGAAC

124 hree Mac1-responsive elements in FRE7, a new consensus sequence for Mac1 binding can be established a

125 hionine, AAGATGG, conforms well to the Kozak consensus sequence for mammalian protein biosynthesis an

126 resented for all 17 exons and conform to the consensus sequences for mammalian splice sites.

127 ors, identified 2 decades ago, established a consensus sequence for methylation by methyltransferase

128 he site surrounding serine 721 is an optimum consensus sequence for mitogen-activated family of prote

129 -phosphate receptors engineered to contain a consensus sequence for modification by this enzyme.

130 xclusively in the sequence 5'-NAT-3', but no consensus sequence for modified sites has been found.

131 FIP-1 has two consensus sequences for myristoylation which would be ex

132 An additional consensus sequence for N-glycosylation at Asn 662 is lik

133 o that of peptides, and the requirement of a consensus sequence for N-glycosylation further limits th

134 mmunoglobulin (Ig)-like domains, each with a consensus sequence for N-glycosylation.

135 The latter defines an Asn-Xaa-Thr consensus sequence for N-glycosylation.

136 S, and A125T were introduced to preserve the consensus sequence for N-linked glycosylation found in h

137 ids (PALLREAENFTLFIKNS) that includes an NFT consensus sequence for N-linked glycosylation.

138 Human CD69 contains only a single consensus sequence for N-linked oligosaccharide addition

139 laced by those of src, which also contains a consensus sequence for N-myristoylation, or by those of

140 CaBP1 and CaBP2 contain a consensus sequence for N-terminal myristoylation, simila

141 ineering of the p19Arf N terminus to provide consensus sequences for N-acetylation limited Arf ubiqui

142 tionally significant protein motifs revealed consensus sequences for N-glycosylation, protein kinase

143 r domain of these receptors contains several consensus sequences for N-linked glycosylation that may

144 In addition, these data suggest a consensus sequence for NESs of the Rev/Rex class.

145 We defined consensus sequences for Neurogenin and NeuroD binding an

146 the bcl-x gene promoter contains a putative consensus sequence for NF-kB/CS4 responsive activation.

147 e in Bacillus megaterium, which reflects the consensus sequence for non-alkaliphilic Bacillus.

148 amer binding motif and also conformed to the consensus sequence for nuclear matrix attachment regions

149 sites within the ICR are very similar to the consensus sequence for nuclear receptor extended half si

150 that NLVCF is a novel gene that contains two consensus sequences for nuclear localization signals.

151 Sequence analysis revealed the presence of consensus sequences for numerous transactivating factors

152 We recently proposed a broadened consensus sequence for O-fucose, C(2)X(3-5)(S/T)C(3) (wh

153 e-1 repeats (TSRs), six of which contain the consensus sequence for O-fucosylation by protein O-fucos

154 Although the current putative consensus sequence for O-GlcNAcylation predicts 18 O-Glc

155 n this finding, we propose a revision of the consensus sequence for O-glucosylation to allow alanine

156 Cysteines are present in each domain and consensus sequences for O-linked glycosaminoglycans are

157 ences of these selective substrates with the consensus sequence for optimal substrates for t-PA, deri

158 Nevertheless, a consensus sequence for origins has yet to be identified

159 Our data indicate that the generally held consensus sequences for p34(cdc2) represent a significan

160 ynamics simulations on DNA segments with the consensus sequence for p53-specific binding, half site D

161 protein overlaps a PuPuPuC(A/T)(T/A)GPyPyPy consensus sequence for p53.

162 rticular importance because of the lack of a consensus sequence for palmitoylation.

163 We used all 10 sites to refine the consensus sequence for parS.

164 among themselves and with previously defined consensus sequences for Pax-5 and Pax-2.

165 A consensus sequence for Pbx1-HoxA10 DNA binding has been

166 The mutation of the consensus sequences for PC cleavage in the lefty protein

167 ger group of peptides containing a different consensus sequence for PCNA binding was discovered.

168 an extended "PIF" sequence C-terminal to the consensus sequence for PDK1 phosphorylation.

169 esis contained sequences which resembled the consensus sequence for PhoB binding.

170 61 and the surrounding amino acids are in a consensus sequence for phosphorylation by casein kinase

171 This threonine lies within a consensus sequence for phosphorylation by casein kinase

172 Phosphorylation of Ser319 forms a consensus sequence for phosphorylation by CK1, allowing

173 Tyr-161 shares similarity to the consensus sequence for phosphorylation by the nonrecepto

174 88 of APS is contained in a protein kinase B consensus sequence for phosphorylation conserved in APS

175 Both of these proteins, which have optimal consensus sequences for phosphorylation by Fes, were tig

176 sites do not correspond to the known optimum consensus sequences for phosphorylation by MAPK (PX(S/T)

177 The large number of consensus sequences for phosphorylation by PKA has natur

178 Each species' amino acid sequence contains consensus sequences for phosphorylation by PKC (KVT(72)V

179 s of amino acid residues thought to serve as consensus sequences for phosphorylation by serine/threon

180 The StAR protein contains two consensus sequences for phosphorylation catalyzed by pro

181 The previously derived consensus sequence for phosphotyrosine recognition by th

182 ression of COX-2 by PMA and the existence of consensus sequences for PKC phosphorylation, it appears

183 lo-alpha in which Ser-1072 (the only optimal consensus sequence for PKG phosphorylation) was replaced

184 quences for PLK2, -3, and -4 and an expanded consensus sequence for PLK1, which we use to design an o

185 These findings suggest that consensus sequences for posttranslational modifications

186 f the SF3b155 sites defines an (R/K)nXRW(DE) consensus sequence for predicting U2AF65-UHM ligands fro

187 four animals, the new sequences represented consensus sequences for primate lentiviruses, whereas th

188 tion start sites showed good homology to the consensus sequences for promoter elements of sigma(F)-de

189 katA is a sequence that closely matches the consensus sequence for promoters regulated in Escherichi

190 This region contains a consensus sequence for protein kinase A, RRAS(230)F, and

191 al alterations, and ii) define an amino acid consensus sequence for protein palmitoylation.

192 cent protein (GFP)-TOP1 corresponding to the consensus sequence for protein sumoylation (PsiKXE, wher

193 We uncover consensus sequences for Psi in mammalian mRNA and assign

194 he Arf GAP domain, and one of these fits the consensus sequence for PtdIns(3,4,5)P(3) binding.

195 surrounding phosphotyrosine 317 matches the consensus sequence for recognition by the phosphotyrosin

196 the T-arm of tRNA and constructed a minimal consensus sequence for RUMT recognition and catalysis.

197 lerated within the stem-loop-forming genomic consensus sequence for self-catalyzed site-specific depu

198 The consensus sequences for self-depurination of such G- and

199 FIP-2 has consensus sequences for several potential posttranslatio

200 d N-terminal polyproline regions fitting the consensus sequence for SH3 domain ligands, and a YDYV mo

201 tored the binding selectivity to the general consensus sequence for SH3 domains, the PXXP motif.

202 ion in SIV Nef was strikingly similar to the consensus sequence for SH3 ligand domains possessing the

203 ed genes in the sigH regulon with a putative consensus sequence for SigH binding that was recognized

204 nd other regulatory regions led to a revised consensus sequence for sigmaE-dependent promoters.

205 Here, we exploit a preliminary consensus sequence for sigmaR target promoters to identi

206 experiments with oligonucleotides containing consensus sequences for Sp1 and AP-1 binding identified

207 omoter contains 1-base pair (bp) overlapping consensus sequences for Sp1 and MAZ transcription factor

208 to the CH exons from another locus by using consensus sequences for splicing donor and acceptor site

209 This site is adjacent to a consensus sequence for Src-mediated tyrosine phosphoryla

210 hese two tyrosine residues are surrounded by consensus sequences for Src homology 2 (SH2) domain bind

211 , contain a proline-rich region that matches consensus sequences for Src homology 3 (SH3) ligands.

212 cognition motifs for substrates, although no consensus sequence for substrates exists.

213 Most splice junctions conform to consensus sequences for such junctions.

214 uence homology of a sample tested to a group consensus sequence for that sample.

215 This site lies within the consensus sequence for the acidotrophic kinases, casein

216 eness to GnRH-2 (SURG-2), which contains the consensus sequence for the activating protein-1-binding

217 a fluorescein-labeled decoy ODN containing a consensus sequence for the AP-1 transcription factor, we

218 tinct LexA binding sites reveals an expanded consensus sequence for the B. subtilis operator: 5'-CGAA

219 functional beta-lactamase mutants revealed a consensus sequence for the binding of BLIP.

220 The phosphorylation generated a consensus sequence for the binding of the SH2 domain of

221 Altering the enhancer pyrimidine tract to a consensus sequence for the binding of U2AF eliminated en

222 sing an oligonucleotide corresponding to the consensus sequence for the biotin-binding motif, two unl

223 Our work establishes an extended consensus sequence for the c-di-GMP-binding motif and hi

224 We have assembled the predicted mRNA consensus sequence for the chicken UBE3A gene using publ

225 E, 5'-TGACGTCA-3', has been described as the consensus sequence for the cis-element that directs cAMP

226 cleaved within the gamma2 chain matches the consensus sequence for the cleavage of type I, II, and I

227 A consensus sequence for the coiled-coil copine-binding si

228 ted species allowed us to deduce an expanded consensus sequence for the compositionally unusual promo

229 pe 1 repeats (TSR), seven of which contain a consensus sequence for the direct addition of fucose to

230 ly transcribed flagellar promoters possess a consensus sequence for the DNA-binding protein integrati

231 We applied this model to a subtype C consensus sequence for the Envelope (Env) (used as input

232 of homology to each other as well as to the consensus sequence for the Escherichia coli Fur protein.

233 To assay the genomic DNA, we established a consensus sequence for the first 12 kb of the COL1A1 gen

234 The consensus sequence for the first family, HeliBat1, displ

235 ulting structural changes alter the adjacent consensus sequence for the guanine ring binding of GDP/G

236 the major start site P1 is dependent upon a consensus sequence for the housekeeping sigma factor Sig

237 transcribed from promoters containing a new consensus sequence for the human initiator (Inr) core pr

238 r purine and Y stands for pyrimidine, as the consensus sequence for the KCS element, both for basal a

239 395 and threonine 1179) contained a perfect consensus sequence for the mitogen-activated protein kin

240 A consensus sequence for the mycobacterial OxyR recognitio

241 The consensus sequence for the NAD(P)H binding site [(V/I)(A

242 yotic and eukaryotic P5CRs is similar to the consensus sequence for the NAD(P)H-binding site of other

243 b and Ec core sequences are identical to the consensus sequence for the nuclear hormone receptor supe

244 id sequence shows regions of homology to the consensus sequence for the peptidyl carrier protein (PCP

245 he purified protein and the other based on a consensus sequence for the phosphorylation site of P-typ

246 The lack of a defined consensus sequence for the ppGalNAcTs makes the predicti

247 h residues 17 to 21 (L-A-A-C-S) matching the consensus sequence for the prolipoprotein cleavage site

248 The Alu sequence was less similar to the consensus sequence for the PV or Sb2 subfamilies, subfam

249 A consensus sequence for the second ancient mariner identi

250 The consensus sequence for the selected thioaptamers showed

251 promoters have excellent matches to the -10 consensus sequence for the sigma 70 subunit of Escherich

252 contained a GC-rich region consistent with a consensus sequence for the SP1 family, that was sufficie

253 seven conserved tyrosines, a phosphorylation consensus sequence for the Src family of tyrosine kinase

254 alysis predicts a COOH-terminal (E/Q)(S/T)XV consensus sequence for the strongest binding to the firs

255 vivo binding sites have a weak match to the consensus sequence for the transcription factor being an

256 A consensus sequence for the two direct repeats bound by H

257 ics and site-directed mutagenesis to outline consensus sequences for the adenylation of piperazic aci

258 ine phosphorylation are also present, as are consensus sequences for the binding of SH2 and PDZ domai

259 The human iNOS promoter contains consensus sequences for the binding of transcription fac

260 of a TATA-box, a high GC region, and several consensus sequences for the binding of transcription fac

261 The consensus sequences for the DNA polymerase gamma exonucl

262 ChIP-chip studies have provided conflicting consensus sequences for the FOXP2-binding site.

263 The consensus sequences for the high affinity UhpA-binding s

264 BP-1 gene structure revealed three potential consensus sequences for the hypoxia response element (HR

265 bling EST sequences to produce high-fidelity consensus sequences for the represented genes (F.L. et a

266 and antagonists on Muc-1 expression, because consensus sequences for the response elements of these s

267 All the sites contained consensus sequences for the serine/threonine-proline-dir

268 ion of each cell, as well as highly accurate consensus sequences for the somatically rearranged and h

269 genome were sufficient to provide functional consensus sequences for the THAP domains, they do not sp

270 .1% identity of nt sequences and contain the consensus sequences for the transcription factors AP-2 a

271 Consensus sequences for the two study groups were identi

272 In the present study we derived a consensus sequence for this entire ORF (ORF2) as well as

273 ed and oriented using known genes, BAC ends, consensus sequences for transcript assemblies, and compa

274 nt DNA-protein complex that was abolished by consensus sequence for transcription factor ZNF143/76 or

275 ations identified were in close proximity to consensus sequences for transcription control elements w

276 moieties, accounting, in part, for the broad consensus sequence for TrmA substrates.

277 site of human PPT-I promoter and identified consensus sequences for two cAMP response elements (CRE)

278 henylalanineCOOH, that closely resembles the consensus sequence for type-1 peroxisomal targeting sign

279 Both Ser reside in consensus sequences for type II calmodulin-dependent pro

280 nine replacement of three tyrosines within a consensus sequence for tyrosine sulfation abolished bind

281 The phosphorylation consensus sequence for Ypk1 was similar to that for PKBa

282 recognize several DNA substrates without the consensus sequence for YY1 in vitro, and DNA binding is

283 Database search revealed presence of a consensus sequence for zinc finger protein gut-enriched

284 Our findings begin to define a consensus sequence for ZMPSTE24 that helps to clarify ho