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1 elevated temperatures relative to the parent cyanine.
2 hine cyanine to the corresponding trimethine cyanine.
3 ed C4'-dialkylamine-substituted heptamethine cyanines.
4 ear optical properties analogous to those of cyanines.
5 yene cations and dyes such as indigo and the cyanines.
6 per into the NIR region than common indoline-cyanines.
8 initial donor for energy transfer with both Cyanine 3 (Cy3) and Alexa Fluor 647 (A647) fluorescent d
9 Here we report that small molecules, such as cyanine 3 (Cy3), a synthetic fluorescent molecule, and 4
11 uorescence resonance energy transfer between cyanine 3 and 5 terminally attached to duplex species ex
16 L was labeled with the far-red dye sulfonate cyanine 5 (sCy5), site-specifically conjugated to the C-
21 eavage, induced by targeted enzymes leads to Cyanine 5 signal enhancement, which is finally quantifie
24 Atto467N (emitting at the same wavelength as cyanine 5, Cy5) were found to bleach significantly less
25 tinct acceptor fluorophores, fluorescein and cyanine 5, to label of NCoR and SRC3, respectively, we h
27 aqueous solutions by the use of a mixture of Cyanine 5.5 (Cy5.5) fluorophore- and BHQ3 quencher-conju
30 tation wavelength and emission wavelength of Cyanines 5 (Cy5), was used to amplify the fluorescence s
31 Methods: A tracer comprising a methylated cyanine-5 (Cy5) fluorescent dye and a mercaptoacetyltris
32 al resonance at the excitation wavelength of cyanine-5 (Cy5), thus providing an increase in fluoresce
36 , ligands were successfully "clicked" with a cyanine-5 fluorophore containing the complementary "clic
37 ed that the probe incorporating a sulfonated cyanine-5 fluorophore was the most appropriate for imagi
38 robe was synthesized by covalently attaching cyanine 7 (Cy7), a near-infrared cyanine dye, to tilmano
39 -99m ((99m)Tc)-labeled TCP-1 and fluorescent cyanine-7 (Cy7)-labeled form of the peptide (Cy7-TCP-1).
42 tes 1a-1c consisting of a BODIPY donor and a cyanine acceptor were prepared using a simple synthetic
43 that the photoconversion product is a thiol-cyanine adduct in which covalent attachment of the thiol
48 c structures consist of a positively charged cyanine and negatively charged dienolate moieties, confi
50 h, we demonstrate the correspondence between cyanines and the new class of alkyne carbocations, in sp
52 the fluorescence lifetime of the restrained cyanine are not extended relative to the parent cyanine,
56 sitized to target-specific activation by the cyanine-based biarsenical compounds AsCy3 and AsCy5.
57 stain SYBR Safe indicates that it contains a cyanine-based cationic core structure identical to thiaz
59 pramolecular strategy to develop ultrabright cyanine-based fluorescent materials by addressing long-s
60 nter cells upon coincubation and contain two cyanine-based fluorescent reporters covalently bound to
62 rall, this paper reports readily accessible, cyanine-based through-bond ET cassettes that are lypophi
63 Herein, we present an array of five anionic cyanine-based turn-on plasma membrane probes with emissi
65 hetic route to pentamethine and heptamethine cyanines bearing C1' chain substituents that allow subst
67 the six indolizine-cyanine dyes with varying cyanine bridge length and indolizine substituents showin
68 novel donor group, indolizine, with varying cyanine bridge lengths, dye absorptions and emissions, w
74 ormationally restraining ring systems to the cyanine chromophore creates exceptionally bright fluorop
76 ning substituent effects on the heptamethine cyanine chromophore, we find that introduction of a sing
78 ically examine the self-healing mechanism in cyanine-class organic fluorophores spanning the visible
80 isualized with fluorescence microscopy using cyanine-conjugated and fluorescein-conjugated secondary
81 visualized by fluorescence microscopy using cyanine-conjugated and fluorescein-conjugated secondary
82 arise from the cationic nature of the target cyanine-containing sensitizers (S), which drastically li
84 Hybridization signals were visualized with cyanine (Cy)-5 or Cy-3 fluorescent reporter molecules, a
85 dyes (termed dyedrons) comprised of multiple cyanine (Cy3) donors coupled to a single malachite green
89 estigation of the truncation of heptamethine cyanines (Cy7) to pentamethine (Cy5) and trimethine (Cy3
90 tophysics and photochemistry of heptamethine cyanines (Cy7), bearing iodine as a heavy atom in the C3
92 o significantly reduce the strong and random cyanine-cyanine interactions (i.e., aggregation) in the
93 t labeling of lysine groups on proteins with cyanine CyDye DIGE Fluor minimal dyes before isoelectric
94 idic media with the generation of a deep red cyanine derivative, absorbing at 537 nm, which is visibl
98 orts, the photoisomerization of heptamethine cyanines does not contribute significantly to the excite
99 experiments compared a shielded heptamethine cyanine dye (and several peptide and antibody bioconjuga
101 n allowed the conjugation with a fluorescent cyanine dye (Cy5) and biotin, resulting in binding K(i)
102 and MeHg(+) -responsive near-infrared (NIR) cyanine dye (hCy7) for MeHg(+) detection within living s
103 -rotaxane supramolecular assembly with a Cy7 cyanine dye (hexamethylindotricarbocyanine) threaded alo
104 all the dyes studied relative to a benchmark cyanine dye (ICG) during photoexcitation with exceptiona
106 tact and were detected using the symmetrical cyanine dye 3,3'-diethylthiadicarbocyanine iodide (DiSC2
107 engineering strategies designed to red-shift cyanine dye absorptions and emissions further into the n
108 ansferred through an acetylene bridge to the cyanine dye acceptor, which emits light at approximately
109 tion of densely packed, discrete clusters of cyanine dye aggregates with tunable absorption spectra a
110 tilized coupling between a tetrazine-derived cyanine dye and a trans-cyclooctene-modified bisphosphon
112 ormation of an encounter complex between the cyanine dye and ionized thiol prior to their conjugation
113 to study the interaction between a cationic cyanine dye and peptide nucleic acid (PNA)-DNA duplexes.
114 enching of a conjugated polyelectrolyte by a cyanine dye are investigated by femtosecond fluorescence
115 his is the first demonstration of an encoded cyanine dye as a ncAA in a eukaryotic expression system
117 ble-walled nanotubes (DWNTs) formed from the cyanine dye C8S3 provide a robust, self-assembled system
120 Solution and solid-phase syntheses of a cyanine dye conjugated to polystyrene beads (desired for
126 blueing" reaction, in which the heptamethine cyanine dye Cy7 (IUPAC: 1,3,3-trimethyl-2-((1E,3E,5E)-7-
127 probe (TRAP) consisting of a monosubstituted cyanine dye derivatized with arsenic (i.e., TRAP_Cy3) to
130 ry oligonucleotides were conjugated with the cyanine dye fluorophores Cy3 and Cy5 to quantify the mel
131 utility of the fluorous soluble pentamethine cyanine dye for tracking the localization of perfluoroca
135 is observed from J-aggregates of the achiral cyanine dye in association with a random coil CMA, sugge
138 estigated for polyelectrolytes consisting of cyanine dye pendant polylysines ranging in number of pol
139 The influence of the DNA target and probe cyanine dye position on oligo-DNA duplex formation behav
140 water solubility by modifying rhodamine and cyanine dye scaffolds with multiple sulfonate groups.
141 we have introduced the bis-quinoline (BisQ) cyanine dye that emits light in the red region (605-610
142 YTOX Green stain is a cationic unsymmetrical cyanine dye that is excluded from live cells but can rea
145 s efficient energy transfer from the central cyanine dye to the surrounding zinc porphyrin nanoring.
148 sensor 790 combines a near-infrared emitting cyanine dye with a sulfur-rich receptor to provide a sel
149 on between DNA and a benzothiazole-quinoline cyanine dye with a trimethine bridge (TO-PRO-3) results
151 erated photobleaching of the light-sensitive cyanine dye, 3,3'-diethylthiacarbocyanine iodide (DiSC(2
152 re examined: Rhodamine 6G, crystal violet, a cyanine dye, and a cationic donor-acceptor substituted s
153 lipid-specific since inclusion of a cationic cyanine dye, DiIC18(3), to impart positive charge in pla
154 amer selected for binding to the fluorogenic cyanine dye, dimethylindole red (DIR), also binds and ac
155 irect the formation of dye aggregates with a cyanine dye, K21, into discrete branched photonic comple
156 y attaching cyanine 7 (Cy7), a near-infrared cyanine dye, to tilmanocept, a radiopharmaceutical that
157 a rational approach to develop colorimetric cyanine dye-displacement assays that can be broadly appl
165 d with increasing DS (of CMA), rendering the cyanine dye/CMA complex a more rigid (a high fluorescenc
166 ans of Stark effect in planar heterojunction cyanine dye/fullerene organic solar cells enables one to
171 data that show susceptibility of a class of cyanine dyes (e.g., Cy5, Alexa 647) to ozone levels as l
173 e-shell nanoparticles that encapsulated with cyanine dyes and applied the dye-doped nanoparticles as
177 ocavities containing two spatially separated cyanine dyes are presented here, where simultaneous stro
181 ntum dot-quantum rods (QD-QRs) as donors and cyanine dyes as acceptors, which are conjugated to QD-QR
182 terature survey indicated no previous use of cyanine dyes as contrast agents for in vivo optical dete
183 ed for the site-specific genetic encoding of cyanine dyes as non-canonical amino acids (Cy-ncAAs) int
185 -to-high-yielding synthesis of unsymmetrical cyanine dyes bearing -COOH substituents for functionaliz
186 phile that initiates chain shortening of the cyanine dyes by attack on their polymethine backbones.
187 , monofunctional, water-soluble heptamethine cyanine dyes containing a robust C-C bond at the central
188 dure to the synthesis of otherwise difficult cyanine dyes containing multiple heteroatoms in the indo
191 -infrared window of fluorescent heptamethine cyanine dyes greatly facilitates biological imaging beca
195 nding of structure-property relationships in cyanine dyes is critical for their design and applicatio
196 oping structure-aggregation relationships of cyanine dyes is crucial for controlling their optical pr
198 spectral properties of a series of dianionic cyanine dyes of the rare A(1)-n-A-n-A(1) type, with the
199 ese studies demonstrate that the red-shifted cyanine dyes offer spectral flexibility in multiplexed i
202 the corresponding electronic potential makes cyanine dyes the compounds to which simple free-electron
203 le fragment antibody protein and a family of cyanine dyes to create new protein-dye fluoromodules tha
204 beling methodology that uses platinum-linked cyanine dyes to directly chemically label mRNA from as l
205 nsfers the pH sensitivity of photolabile NIR cyanine dyes to highly emissive and long-lifetime pH-ins
206 the direct transformation of Zincke salts to cyanine dyes under mild conditions, accompanied by the i
208 phenyl-, and phenyl-substituted heptamethine cyanine dyes were prepared by a modified Suzuki--Miyaura
209 is study, four novel pentamethine indolizine cyanine dyes were synthesized with N,N-dimethylaniline-b
210 h high affinity to several other fluorogenic cyanine dyes with emission wavelengths covering most of
213 ssisted synthesis of asymmetric pentamethine cyanine dyes with various functional groups was develope
214 ionships are explored for the six indolizine-cyanine dyes with varying cyanine bridge length and indo
215 lass of NIR fluorescent dyes, pyrrolopyrrole cyanine dyes, have exceptionally long FLTs ranging from
216 spectroscopy, and DFT modeling on a range of cyanine dyes, herein we show that photoinduced electron
217 el doubly strapped zwitterionic heptamethine cyanine dyes, including a structural analogue of ZW800-1
218 ing long-standing challenges associated with cyanine dyes, including undesired cis-trans photoisomeri
221 g is first visualized through conjugation of cyanine dyes, then biological utility is highlighted by
230 l as one may think; rhodamines belong to the cyanine family whereas rhodols belong to merocyanines.
232 les are formed from a commercially available cyanine fluoroalkylphosphate (CyFaP) salt dye and used f
233 4-nitrobenzyl alcohol (NBA) or Trolox to the cyanine fluorophore Cy5 dramatically enhanced fluorophor
234 mbrane antigen (PSMA); 2) a NIR heptamethine cyanine fluorophore optimized for enhanced PSMA binding
239 nal stacking is an intrinsic property of the cyanine fluorophores irrespective of the length of the t
240 port the synthetic variation of pentamethine cyanine fluorophores with modifications of physicochemic
242 ally over the fluorochromes of near-infrared cyanine heptamethine dyes to create hydrophilic analogs
244 ucture-activity relationship for symmetrical cyanine inhibitors of human tau aggregation was elaborat
245 HF6/PH6* hexapeptide motifs, indicating that cyanine interacted with a species in the aggregation pat
247 yanine Cy7 or, alternatively, a heptamethine cyanine IRDye 800CW) that were linked at the positions +
248 ence lifetime of the restrained heptamethine cyanine is temperature-insensitive and significantly ext
251 yridine derivatives IIIa and IVa displayed a cyanine-like character with intense absorption and highe
253 of the third-order polarizability (gamma) of cyanine-like molecules through incorporation of polariza
254 amer, display conjugated structures near the cyanine limit of bond length equalization as a result of
255 ded conjugation are known to cross over the "cyanine limit" and undergo a symmetry breaking Peierls t
257 Supra-cyanines are obtained by incorporating cyanine moieties in a cyclic peptide-based supramolecula
259 red (DIR), also binds and activates another cyanine, oxazole thiazole blue (OTB), giving two well-re
260 on the nature of the dye pair used, with the cyanine pair Cy3-Cy5 showing the least amount of fluctua
261 -dioctadecyl-3,3,3',3'-tetra-methylindocarbo-cyanine perchlorate (DiI) was applied via tracheal insti
262 '-dioctadecyl-3,3,3',3'-tetramethylindocarbo-cyanine perchlorate (DiI) was used to label selectively
264 elating the ground state polarizabilities of cyanine, phenothiazine, and arylmethine derivatives calc
265 Here, we report synthetically accessible cyanine photocages that liberate alcohol, phenol, amine,
267 vide critical insight into the reactivity of cyanine polyene chains and elucidate the truncation mech
268 resonance energy transfer (FRET), and loaded cyanine probe (e.g., 1,1-dioctadecyl-3,3,3,3-tetramethyl
269 g mice by two-photon microscopy, the anionic cyanine probes allowed us to visualize in detail the pyr
270 absorption and emission with squaraines and cyanines relative to classically researched indoline don
271 lors by covalently linking a photoswitchable cyanine reporter and an activator molecule to assist bio
272 cyanines can be organized into complementary cyanine salts, offering potential building blocks to mod
273 le of photoisomerization in the heptamethine cyanine scaffold and demonstrate the dramatic effect of
274 of covalently appended fluorous tags on the cyanine scaffold and evaluate the changes in photophysic
275 fluorogenic probes based on the heptamethine cyanine scaffold, the most broadly used NIR chromophore.
279 nlike conventional scaffolds, they favor the cyanine state with increasing solvent viscosity and hydr
284 rm complexes with highly polarizable anionic cyanines to significantly reduce the strong and random c
285 modified by (a) electronic tuning along the cyanine-type axis via modification of the donor-acceptor
289 ) to pentamethine (Cy5) and trimethine (Cy3) cyanines via homogeneous, acid-base-catalyzed nucleophil
290 ng radical prostatectomy using near-infrared cyanine voltage-sensitive dye (VSD) imaging, which visua
291 issense mutants as targets, interaction with cyanine was localized to the microtubule binding repeat
294 se (tens of cm(-1) for the chain-substituted cyanines), which allowed us to interpret the observed po
296 elies on the methine extension of asymmetric cyanines, which unfortunately fails to produce sensitive
297 are based on rhodamines, carbopyronines and cyanines with excellent photophysical properties, that i
299 of which will accelerate the development of cyanines with properties tailored for specific applicati