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1 nly in the latter (Kcat = 0.03% of wild-type dehalogenase).
2 r a haloacetate dehalogenase or a haloalkane dehalogenase.
3 oyl-CoA more tightly than does the wild-type dehalogenase.
4 nt of dichloroethane catalyzed by haloalkane dehalogenase.
5 source of the catalytic power of haloalkane dehalogenase.
6 W137F mutant enzymes of 4-chlorobenzoyl-CoA dehalogenase.
7 -CoA undergoes major changes upon binding to dehalogenase.
8 er enzyme of halocarbon metabolism, haloacid dehalogenase.
9 ized product in the active site of wild-type dehalogenase.
10 on, and near 1610 cm-1 in the active site of dehalogenase.
11 to the active site of 4-(chlorobenzoyl)-CoA dehalogenase.
12 ectroscopy in its free form and bound to the dehalogenase.
13 fluorination activity to a nondefluorinating dehalogenase.
14 esence of a gene that putatively codes for a dehalogenase.
15 new subtype within the alpha/beta hydrolase dehalogenases.
16 measured for wild-type and Glu232Asp mutant dehalogenases.
17 erial, isomer-selective 3-chloroacrylic acid dehalogenases.
18 alamin-dependent methyltransferases, and the dehalogenases.
19 nover rates in the wild-type and H90Q mutant dehalogenases.
20 er-containing, membrane-associated reductive dehalogenases.
21 genases as well as metabolic and cometabolic dehalogenases.
22 xpression levels of their multiple reductive dehalogenases.
23 dration of functionally important regions of dehalogenases.
24 six rRNA operons and six predicted reductive dehalogenases.
27 sis that MSAD and trans-3-chloroacrylic acid dehalogenase, a tautomerase superfamily member preceding
28 ndent subfamilies, we propose that reductive dehalogenases achieve reduction of the organohalide subs
29 ay have evolved convergently from homologous dehalogenases across phyla (Cnidaria, Echinodermata, and
31 ables the acquisition of a basal iodomethane dehalogenase activity as yet unknown in natural alkane m
33 rystal structure of the complex of 4-CBA-CoA dehalogenase and 4-HBA-CoA we propose that aspartate 145
34 sive similarity to the ancient L-2-halo-acid dehalogenase and DDDD phosphohydrolase superfamilies, bu
35 cus rhodochrous NCIMB 13064, and haloalcohol dehalogenase and epoxide hydrolase from Agrobacterium ra
38 this domain is similar to that of haloalkane dehalogenase and shares the alpha/beta hydrolase fold.
40 The k(obs) for EAr formation in wild-type dehalogenase and the more active dehalogenase mutants (Y
41 e activities, hydrolytic 4-chlorobenzoyl-CoA dehalogenase and thioesterase activities, 4-hydroxybenzo
42 tion of a soluble, oxygen-tolerant reductive dehalogenase and, by combining structure determination w
43 current knowledge about catabolic reductive dehalogenases and the electron transfer chain they are p
44 hlorobenzoyl-CoA ligase, 4-chlorobenzoyl-CoA dehalogenase, and 4-hydroxybenzoyl-CoA thioesterase.
46 , glutathione transferase, haloalkanoic acid dehalogenase, and isoprenoid synthase), with five superf
47 ed Protein A, three wild-types of haloalkane dehalogenases, and a mutant stabilized by protein engine
48 s phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a rema
49 ts for EMc formation in wild-type and mutant dehalogenase are approximately 200 s(-1) while the rate
50 (or bvcA) encoding reductive vinyl chloride dehalogenases are important to achieve complete dechlori
51 e evolutionarily related catabolic reductive dehalogenases are oxygen tolerant, with those that are n
54 n, it is likely that tetrachlorohydroquinone dehalogenase arose from a maleylacetoacetate isomerase.
59 evel cis-CaaD and trans-3-chloroacrylic acid dehalogenase (CaaD) activities, with the cis-CaaD activi
61 reviously studied trans-3-chloroacrylic acid dehalogenase (CaaD) and with other members of the 4-oxal
62 merase (4-OT) and trans-3-chloroacrylic acid dehalogenase (CaaD) are members of the tautomerase super
64 e active site of the enzyme 3-chloroacrylate dehalogenase (CaaD), isolated from a pseudomonad growing
65 ichloropropene is trans-3-chloroacrylic acid dehalogenase (CaaD), which converts the trans-isomers of
66 critical for the trans-3-chloroacrylic acid dehalogenase (CaaD)-catalyzed conversion of trans-3-halo
68 ion with an enrichment of vcrA (VC reductive dehalogenase)-carrying Dehalococcoides, whereas ethene p
73 In this paper, we report the kinetics for dehalogenase-catalyzed 4-fluorobenzoyl-CoA (4-FBA-CoA) a
74 m of tyrosine, while tetrachlorohydroquinone dehalogenase catalyzes a more specialized reaction, it i
76 t bound to the active site of asparagine 145 dehalogenase catalyzes the deamidation of the asparagine
91 he X-ray crystal structure of chlorothalonil dehalogenase (Chd) from Pseudomonas sp. CTN-3, with 15 o
92 e inhibitors of the cis-3-chloroacrylic acid dehalogenase ( cis-CaaD) homologue Cg10062 found in Cory
94 e gene encoding the cis-3-chloroacrylic acid dehalogenase (cis-CaaD) from coryneform bacterium strain
96 inetic mechanism of cis-3-chloroacrylic acid dehalogenase (cis-CaaD) has now been examined using stop
97 logenase (CaaD) and cis-3-chloroacrylic acid dehalogenase (cis-CaaD) represent the two major classes
98 nd expression of the bacterial chloromethane dehalogenase cmuA gene in the A. thaliana phyllosphere c
99 describe the development of an alkyl halide dehalogenase-compatible chloroalkane linker phosphoramid
102 ain normal (nonresonance) Raman data for the dehalogenase complexes in the 100-300 microM range and h
103 ntly described corrinoid-dependent reductive dehalogenases, constitute a new subclass within the nitr
106 ecord kinetic time courses of the haloalkane dehalogenase DbjA and analyzed 150 combinations of enzym
107 m extorquens DM4 expresses a dichloromethane dehalogenase (DcmA) that has been acquired through horiz
108 e [Formula: see text]-knotted alpha-haloacid dehalogenase (DehI) protein, we introduce a topological
110 rmostability of the model enzymes haloalkane dehalogenase DhaA and gamma-hexachlorocyclohexane dehydr
111 For comparison, we also mapped haloalkane dehalogenases DhaA and LinB, both of which contain signi
113 considering the S(N)2 reaction of haloalkan dehalogenase (DhlA), analyze the energetics and dynamics
114 we take as a test case the enzyme haloalkane dehalogenase (DhlA), with a 1,2-dichloroethane substrate
115 domains located in the lumen and a haloacid-dehalogenase domain exposed to the chloroplast stroma.
116 found that the conserved C-terminal haloacid dehalogenase domain of EYA1, which has been reported to
117 ently expressed of four detectable reductive dehalogenases during 1,2-dichloroethane exposure, sugges
118 rain 195 showed genes encoding for reductive dehalogenases (e.g., tceA) were not affected during the
120 attention and development: halalkanoic acid dehalogenases (EC 3.8.1.2), hydrogen-halide lyases (EC 4
121 as putida strain PP3 produces two hydrolytic dehalogenases encoded by dehI and dehII, which are membe
124 We apply our method, GASPS, to the haloacid dehalogenase, enolase, amidohydrolase and crotonase supe
125 f the pseudouridine glycosidase and haloacid dehalogenase enzyme families, respectively, catalyze C-r
126 investigate ligand passage in the haloalkane dehalogenase enzyme LinB and the effect of replacing leu
127 hosphoglucomutase (beta-PGM) of the haloacid dehalogenase enzyme superfamily (HADSF) catalyzes the co
128 e large enzyme family, the haloalkanoic acid dehalogenase enzyme superfamily (HADSF) form a "mold" in
130 phatase branch of the HAD (haloalkanoic acid dehalogenase) enzyme superfamily, yet it has evolved to
131 lden inversion mechanism of the fluoracetate dehalogenase FAcD (RPA1163) has been studied by subjecti
133 ain, which has high homology to the haloacid dehalogenase family of phosphatases, has not been defini
138 ponds to At5g32470, encoding a HAD (haloacid dehalogenase) family phosphatase fused to a TenA (thiami
139 chitecture, a fusion of a predicted haloacid dehalogenase fold with a previously unidentified GCN5-re
141 le in the active site of 4-chlorobenzoyl-CoA dehalogenase, forming a transient covalent link at the 4
142 taining 3-chloro-4-hydroxybenzoate reductive dehalogenase from Desulfitobacterium chlororespirans.
143 glutathione (GSH)-dependent dichloromethane dehalogenase from Methylophilus sp. strain DM11 catalyze
144 Zn(II)-dependent, chlorothalonil-hydrolyzing dehalogenase from Pseudomonas sp. CTN-3 (Chd), enabling
146 ferent microorganisms: engineered haloalkane dehalogenase from Rhodococcus rhodochrous NCIMB 13064, a
147 show that LinB, an HCH-converting haloalkane dehalogenase from Sphingobium indicum B90A, is also able
150 nd product inhibition patterns of haloalkane dehalogenases from Xanthobacter autotrophicus GJ10 (XaDH
152 undwater among the samples with VC reductive dehalogenase gene (bvcA and vcrA) abundances reaching 10
153 gene, distantly related to the chlorophenol dehalogenase gene cprA (pairwise amino acid identity: 23
154 A quantitative PCR (qPCR) assay for the dehalogenase gene dhlA was developed to monitor DCA-degr
156 ular analysis targeting a putative reductive dehalogenase gene of D. chlorocoercia or the bphA gene o
159 ional genes (etnC and etnE) and VC reductive dehalogenase genes (bvcA and vcrA) were strongly related
164 5 were found to contain a conserved haloacid dehalogenase (HAD) domain, which was found to be require
170 A gene cluster containing an (S)-2-haloacid dehalogenase (had) gene was up-regulated in cells grown
171 o proteins containing an N-terminal haloacid dehalogenase (HAD) phosphatase domain followed by four p
175 to the phosphatase subgroup of the haloacid dehalogenase (HAD) superfamily, and propose a function f
176 zed protein NT5DC2, a member of the haloacid dehalogenase (HAD) superfamily, as previously unrecogniz
177 In phosphatases and mutases of the haloacid dehalogenase (HAD) superfamily, phosphoaspartate serves
178 pFHy1 (At1g79790), belonging to the haloacid dehalogenase (HAD) superfamily, seven candidates for the
179 sEH N-terminal fold belongs to the haloacid dehalogenase (HAD) superfamily, which comprises a vast m
180 P-1 suggested a relationship to the haloacid dehalogenase (HAD) superfamily, which contains a number
184 -regulated, novel low-Pi-responsive haloacid dehalogenase (HAD)-like hydrolase, OsHAD1 While OsHAD1 i
188 dingly, the atomic structure of L-2 haloacid dehalogenase has been fitted into the relevant domain of
189 oA and 4-FBA-CoA bound to WT and H90Q mutant dehalogenase have broad features near 1500 and 1220 cm(-
190 alcohol dehydrogenase (AdhS) and halohydrin dehalogenase (HHDH) was investigated as a model bioelect
191 mined that JNA harbors at least 19 reductive dehalogenase homologous (rdh) genes including orthologs
192 ome of strain GEO12 revealed seven reductive dehalogenase homologous (rdh) genes, including tceA and
193 d that two proteins encoded by the reductive dehalogenase homologous genes CbdbA1092 and CbdbA1503 we
196 sistent with deiodination of labeled knob by dehalogenases in hepatocyte microsomes and uptake of the
197 d to determine the activity of the reductive dehalogenases in resting cell assays of strain CBDB1 wit
200 constant for hydrolysis of EAr in wild-type dehalogenase is 20 s(-1) and in the H90Q mutant, 0.13 s(
204 benzoyl-CoA catalyzed by 4-chlorobenzoyl-CoA dehalogenase is investigated using combined QM/MM approa
207 larizing forces and reactivity seen here for dehalogenase is similar to that reported for the additio
208 ctive site region of tetrachlorohydroquinone dehalogenase is very similar to those of the correspondi
209 the only heme-containing peroxide-dependent dehalogenase known to be capable of removing halogens in
210 residues 414-436), which flanks the haloacid dehalogenase-like catalytic domain (residues 251-413), c
211 d region of Pah1, in particular the haloacid dehalogenase-like domain containing the DIDGT catalytic
218 spectra of the complexes involving the D145A dehalogenase mutant that are unable to form an EMc.
219 n wild-type dehalogenase and the more active dehalogenase mutants (Y65D and A112V) was taken to be an
220 talysis in the F64P, G113A, G113S, and G113N dehalogenase mutants was very slow with k(cat) values ra
223 chlorine is then removed hydrolytically by a dehalogenase of the alpha/beta hydrolase superfamily (Bb
224 observed in phosphonatase and the 2-haloacid dehalogenase of the HAD enzyme superfamily indicated com
225 the active site aspartate in the haloalkane dehalogenase of Xanthobacter autothropicus have been com
229 yme-specific rate constants (k(cat)) for the dehalogenases PceA and TceA: 400 and 22 substrate molecu
230 ion catalysis by tetrachloroethene reductive dehalogenase (PceA) of Sulfurospirillum multivorans was
232 operties and the tetrachloroethene reductive dehalogenase (PceA-RDase) localization did not result in
233 tetrachloro-p-hydroquinone (TeCH) reductive dehalogenase (PcpC), which is a glutathione (GSH) S-tran
235 amino acid residues at these stations by the dehalogenases, phosphonatases, phosphatases, and phospho
237 tic strategy and the active site of haloacid dehalogenase proteins shares a common geometry and ident
238 nantly mediated by a single, novel reductive dehalogenase (RDase) catalyzing chlorine removal from bo
239 acterial strains expressing active reductive dehalogenase (RDase) enzymes play key roles in the trans
241 ide-respiring bacteria that harbor reductive dehalogenases (RDases) capable of dehalogenating these p
242 Idiosyncratic combinations of reductive dehalogenase (rdh) genes are a distinguishing genomic fe
243 ology with the cobalamin-dependent reductive dehalogenase (RdhA), however the role played by cobalami
244 containing bacteria with different reductive dehalogenases (rdhA) genes can lead to variable dual C-C
245 dies have identified a critical role for the dehalogenase residue Asp 145 in close proximity to the l
247 otic members of the cis-3-chloroacrylic acid dehalogenase subgroup are limited to fungal species, whe
248 The phosphotransferases of the haloalkanoate dehalogenase superfamily (HADSF) act upon a wide range o
249 Alpha-PMM1, like most haloalkanoic acid dehalogenase superfamily (HADSF) members, consists of tw
250 tional space of the ubiquitous haloalkanoate dehalogenase superfamily (HADSF) was revealed by screeni
251 The protein, a member of the haloalkanoate dehalogenase superfamily (subfamily IIB), was purified t
252 cus on the phosphatases of the haloalkanoate dehalogenase superfamily and the thioesterases of the ho
253 hosphatases that are members of the haloacid dehalogenase superfamily contains the catalytic motif DX
255 tion assignment of the unknown haloalkanoate dehalogenase superfamily member BT2127 (Uniprot accessio
256 with molecular structures of other haloacid dehalogenase superfamily members that were crystallized
260 rotein-tyrosine phosphatases of the haloacid dehalogenase superfamily, as being responsible for depho
261 known and a few as belonging to the haloacid dehalogenase superfamily, but has no known biological fu
269 ry revealed that a trichloroethene reductive dehalogenase (TceA) homologue was the most consistently
271 id approach to evolve a bacterial halohydrin dehalogenase that improves the volumetric productivity o
272 ered a mechanism for tetrachlorohydroquinone dehalogenase that involves a nucleophilic aromatic subst
273 on its degradation by the enzyme haloalkane dehalogenase that is accompanied by a change of local pH
274 Drosophila express a native flavin-dependent dehalogenase that is homologous to the enzyme responsibl
275 -dependent and quinone-independent reductive dehalogenases that are distinguishable at the amino acid
277 er, distinguishes CaaD from those hydrolytic dehalogenases that form alkyl-enzyme intermediates.
278 substrate and inhibitor specificity for the dehalogenase, the enzyme was found to require an hydroxy
279 sis that MSAD and trans-3-chloroacrylic acid dehalogenase, the preceding enzyme in the trans-1,3-dich
283 resence of genes encoding putative reductive dehalogenases throughout the phylum expanded the phyloge
284 to unmask the intrinsic KIE of the reductive dehalogenase (TmrA) suggesting that enzyme binding and/o
285 t the rate of the S(N)2 step of a haloalkane dehalogenase using a generative maximum-entropy (MaxEnt)
286 r to facilitate electrophilic catalysis, the dehalogenase utilizes a strong polarizing interaction be
290 ratase/isomerase family, 4-chlorobenzoyl-CoA dehalogenase, was altered by site-directed mutagenesis t
291 absent in the wild-type 4-chlorobenzoyl-CoA dehalogenase, was shown to occur with the structurally m
292 the two proteins myoglobin and fluoroacetate dehalogenase, we present a systematic comparison of crys
293 e strong evidence that four to six reductive dehalogenases were involved in the dehalogenation of all
294 e, no-metal chloroperoxidases and haloalkane dehalogenases were the most abundant halogenase and deha
296 thereby distinguishing CaaD from a number of dehalogenases whose mechanisms proceed through an alkyl-