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1 much of the remainder of the genome is being demethylated.
2 e to activate Bril when the promoter becomes demethylated.
3 essential PRC2 subunit, upon HBx expression demethylate a CpG dinucleotide located adjacent to NF-ka
5 logous expression of ArsI conferred MAs(III)-demethylating activity and MAs(III) resistance to an ars
6 s a 5-methylcytosine dioxygenase and its DNA demethylating activity has been implicated in pluripoten
7 anscriptome reprogramming independent of its demethylating activity to affect key cancer signaling pa
8 llular toxicity of 5-azacytidine and its DNA demethylating activity were strongly reduced after hENT1
10 ng growth factor beta (TGF-beta) cytokine, a demethylating agent (5-azacytidine), B cell receptor eng
11 st (VDA) nor an HDAC inhibitor (HDACI) nor a demethylating agent (DAC) individually could optimally u
12 omoters of these genes; furthermore, the DNA demethylating agent 5 aza-2'deoxycytidine (5-Aza-dC) ant
14 apitulated or enhanced by treatment with the demethylating agent 5-aza-2'-deoxycytidine as well as by
15 and UM-UC13), and exposure to the chromatin demethylating agent 5-aza-2'-deoxycytidine restored HSPA
17 arcinogen-transformed HBECs treated with the demethylating agent 5-aza-2'deoxycytidine revealed miR-1
19 Ha, CaSki, and HeLa cells and treatment with demethylating agent 5-aza-2-deoxycytidine restored DOC2B
21 recapitulated by a co-treatment with the DNA-demethylating agent 5-Aza-C and retinoic acid across var
22 treatment of humanized NSG mice with the DNA-demethylating agent 5-aza-cytidine distinctly enhanced t
23 In response to the chemotherapeutic and DNA-demethylating agent 5-aza-deoxycytidine (5-aza-dC), tran
24 broblasts to nanomolar concentrations of the demethylating agent 5-azacytidine increased basal expres
25 ion of the silenced allele by either the DNA demethylating agent 5-azadeoxycytidine or the SIRT1 inhi
27 f the offspring because treatment with a DNA-demethylating agent alleviated exacerbation of allergic
28 Pure GuaUre-dR was found to be an effective demethylating agent and was able to induce 5azaC-dR type
29 lenic marginal zone lymphoma cell lines to a demethylating agent caused partial reversion of the High
31 version of an adult cell by exposing it to a demethylating agent immediately followed by differentiat
32 Treatment of IDH mutant gliomaspheres with a demethylating agent partially restores insulator functio
33 o a combination of hypoxia, TGF-beta1, and a demethylating agent results in NK cells that express kil
36 he CHS response in mice treated with the DNA demethylating agent, 5-aza-2'-deoxycytidine, after UVB e
37 l re-expression of ER was achieved using the demethylating agent, 5-azacytidine, and the HDAC inhibit
38 nografts were treated with decitabine, a DNA demethylating agent, and cytarabine, a frontline cytotox
39 ol on Ddo expression, treatment with the DNA-demethylating agent, azacitidine, causes increased mRNA
43 derstanding the anti-tumor mechanisms of DNA-demethylating agents and highlight the MDA5/MAVS/IRF7 pa
44 if so, novel therapeutic strategies such as demethylating agents and probiotic adjuncts, particularl
45 garding the advantage of aerosol delivery of demethylating agents and the concept of priming tumors f
48 ound that the endothelial cells treated with demethylating agents could significantly increase the ex
51 view, we discuss the clinical development of demethylating agents in hematology, with a focus on azac
53 leukemic LGL survival, and suggest a role of demethylating agents in the treatment of this disorder.
54 ulmonary carcinogenesis and suggest that DNA demethylating agents may be useful for activating miR-48
58 zone lymphoma and optimize therapy by using demethylating agents to reverse the high-methylation phe
61 ls caution against the indiscriminate use of demethylating agents, such as 5-aza-2'-deoxycytidine (5-
62 cell lines and inducing resensitizaton with demethylating agents, we aimed to identify consistent me
71 s at putative regulatory regions that are CG-demethylated and activated in the adult brain and that C
72 plants has remained unclear since DNA is not demethylated and histones are retained in sperm(3,4).
75 ents were up-regulated in U251MG cells after demethylating and IFN-gamma treatments, suggesting an ef
76 d to the MMP13 promoter when the -104 CpG is demethylated, and confirmed this binding by chromatin im
77 the absence of Kdm3b, loci that must be DNA demethylated are trapped in an intermediate hydroxymethy
79 e nucleolar rRNA genes are nearly completely demethylated at promoter CGs, whereas silenced genes are
80 uction, Helios(-) FOXP3(+) nTreg clones were demethylated at the FOXP3 Treg-specific demethylated reg
81 rograms at naive-associated genes and became demethylated at the loci of classically defined effector
83 The lysine specific demethylase 1 (LSD1) demethylates at both of these lysine residues and has be
87 s question and determine that <2% of regions demethylated by 5-Aza-CdR treatment assume an open confi
88 In this assay methylated peptides are first demethylated by a KDM, and a protein methyltransferase (
89 Moreover, we find that m(6)Am is selectively demethylated by fat mass and obesity-associated protein
90 erally a transcriptional repression mark, is demethylated by H3K9-specific demethylases, leading to t
91 then targeted two proteins whose genes were demethylated by RG108-estrogen receptor 1 (ESR1) and cyc
93 we found that histone H3 lysines 4 and 9 are demethylated by the lysine-specific demethylase, LSD1 an
94 limosum Instead of forming TMA, carnitine is demethylated by the newly discovered methyltransferase M
95 -resorcin[5 and 6]arenes were quantitatively demethylated by treatment with BBr3 to obtain the corres
98 thylation activity of FTO, which selectively demethylates cardiac contractile transcripts, thus preve
99 hl breakdown in Arabidopsis and specifically demethylates Chl catabolites at the level of FCCs in the
100 hritis and systemic lupus erythematosus were demethylated compared to healthy controls and favoured p
101 mice and suggests roles for Tet proteins in demethylating conserved gene enhancers during the phylot
103 , we investigated the function of Gadd45b in demethylating CpG islands of representative gene targets
104 xon and TSS200 and a dominant pattern of age-demethylated CpGs at other gene regions, and by overwhel
105 atterns over gene regions for methylated and demethylated CpGs both relate to reduced gene activity d
107 its oxidized derivatives, at the majority of demethylated CpGs, are converted to unmodified cytosines
108 of relevance to the report that selenoneine demethylates CysHgMe, thereby providing a mechanism for
109 CD8 T cells while key effector genes remain demethylated, demonstrating that memory T cells arise fr
111 nfected individuals, CCR5 cis-regions remain demethylated, despite restoration of CD4+ counts (>/=800
112 s)(m) was found to have a higher capacity to demethylate DMHg, in comparison with dissolved sulfide.
113 therapy against this cancer, we used the DNA demethylating drug 5-aza-2'-deoxycytidine (DAC) in an ag
114 rs, and treatment of the cell lines with the demethylating drug 5-aza-2'-deoxycytidine resulted in in
116 Here we show that treatment with the DNA-demethylating drug 5-Aza-deoxycytidine (AZA) restores hi
117 Early successes have been made with DNA-demethylating drugs in hematologic malignancies, and eff
118 was detectable for only 2 weeks, whereas DNA-demethylating drugs induced permanent epigenetic reprogr
121 transcription initiation, but how H3K4me3 is demethylated during gene repression is poorly understood
122 ethylated in stem cells and gradually became demethylated during normal B-cell differentiation, sugge
123 , hox genes) is methylated, but the loci are demethylated during zygotic cleavage stages to precisely
124 protein expression correlate with the highly demethylated EBV type III latency program permissive for
126 cally, we found that miR-29b targets the DNA-demethylating enzyme, TET1, for downregulation resulting
127 ment leads to the aberrant expression of DNA demethylating enzymes and locus-specific changes to DNA
128 ne in postmitotic neurons is to functionally demethylate expressed gene bodies while retaining the ro
130 y in urine therefore represents a mixture of demethylated fish-derived MeHg and amalgam-derived inorg
132 ites examined, the -104 CpG was consistently demethylated following treatment of human articular chon
133 Herein, we report the first synthesis of a demethylated form of cholesterol (18,19-di-nor-cholester
135 d a higher proportion of CD4(+) T cells with demethylated Foxp3 and a specific expansion of CD4(+) CD
137 CD127CD25CD45RA Treg cells had a stable TSDR demethylated FOXP3 phenotype after expansion whereas CD4
139 TET2 and EBNA2 function cooperatively to demethylate genes important for EBV-driven B-cell growth
140 ignaling pathways, whereas those enriched in demethylated genes after decitabine treatment included p
143 chrome P450 system, GcoAB, was discovered to demethylate guaiacol (2-methoxyphenol), which can be pro
145 er molecular analyses demonstrate that JMJD3 demethylates H3K27me3 along the gene bodies, paving the
146 JD3 activates bivalent gene transcription by demethylating H3K27me3 and promoting transcriptional elo
148 y identifies a crucial function for KDM5A in demethylating H3K4 to allow ZMYND8-NuRD to operate withi
151 o the chromatin of OPEN STOMATA 1 (OST1) and demethylated H3K4me3 for the regulation of OST1 mRNA abu
152 In this study, we show that KDM5B, which demethylates H3K4me3, plays an integral role in regulati
153 of KDM4A-D histone demethylases selectively demethylates H3K9 and H3K36 and is implicated in key cel
155 The histone lysine demethylase 3A (KDM3A) demethylates H3K9me1 and H3K9Me2 to increase gene transc
163 specific demethylase 1 (LSD1; ref. 5), which demethylates histone H3 on Lys 4 or Lys 9 (H3K4/K9), is
164 (lysine [K]-specific demethylase 5A), which demethylates histone H3 on Lys4 (H3K4), as a pRB-interac
165 e-specific demethylase 1 (Lsd1/KDM1a), which demethylates histone H3 on Lys4 or Lys9 (H3K4/K9), is an
167 breast cancer cell invasion and apoptosis by demethylating histone and the non-histone protein p53, r
168 tones, indicating that this HDM is unable to demethylate histones during steady-state conditions.
170 that inflammasome-related genes are rapidly demethylated in both monocyte-to-macrophage differentiat
171 CD56(bright) NK cells and are progressively demethylated in CD56(dim) NK cells as they mature and ac
172 Dnmt3b activity, the majority of which were demethylated in Dnmt3b-/- lymphomas, but not in Dnmt3b-/
175 e, also upregulated in HBV-mediated HCCs, is demethylated in liver tumors at CpG dinucleotides flanki
176 rich Foxp3 intronic cis-element specifically demethylated in mature Tregs, helps maintain immune home
177 enhancer region at -5.8 kb was significantly demethylated in OA samples compared with control samples
179 P-responsive element site, was significantly demethylated in patient-derived compared with normal con
181 ggested that the paternal genome is actively demethylated in the zygote while the maternal genome und
191 t LSD1 positively regulates FOXA1 binding by demethylating lysine 270, adjacent to the wing2 region o
196 (1)H and (13)C NMR of both EAPB0203 and its demethylated metabolite (EAPB0202) to the corresponding
197 -specific demethylase 1, also known as KDM1) demethylates mono- and dimethylated H3K4 in peptide subs
198 y important roles in gene expression through demethylating mono-, di-, or trimethylated lysines.
199 DM1A) acts as a transcriptional repressor by demethylating mono/dimethylated histone H3 lysine 4 (H3K
200 ation assays, which demonstrated that HR can demethylate monomethylated or dimethylated histone H3 ly
201 methylase 3A (KDM3A) binds to PGC-1alpha and demethylates monomethylated lysine (K) 224 of PGC-1alpha
202 resents a molecular switch as methylated and demethylated MTA1 nucleate NuRD or NURF complexes with o
203 is required for the NuRD repressor complex, demethylated MTA1 recognizes the bivalent histone H3K4-A
204 s pretreatment with Escherichia coli AlkB to demethylate N(1)-methyladenosine (m(1)A), N(3)-methylcyt
210 n within the FOXP3 locus that is selectively demethylated only in bona fide Tregs (Treg-specific deme
211 which uncovered hundreds of loci that became demethylated only when hENT1-mediated transport was acti
212 mediated stimulation of Sox2 expression, and demethylating p53 protein and consequently, modulating i
215 Subsequent collisional activation of the demethylated PC anions produces abundant fatty acid carb
216 -induced dissociation (CID) of the resulting demethylated PC product anions allows for the determinat
217 intenance of PD-1 surface expression and the demethylated PD-1 promoter were not a result of residual
218 m distribution of cellulose microfibrils and demethylated pectin coincides with spatial differences i
219 n increased accumulation of less stretchable demethylated pectin in the apical wall, whereas MeSA did
220 l wall stiffness through local enrichment in demethylated pectin, whereas subsequent increase in lobe
221 hen exposed to TAC and maintenance of a TSDR demethylated phenotype following in vitro expansion.
225 yl-l-methionine, the transmethylation of the demethylated precursor of vitamin K is strictly dependen
226 emethylation is occurring in the culture and demethylates preferentially the lighter Hg isotopes of M
227 tcB and related proteins in E. limosum might demethylate proatherogenic quaternary amines and contrib
230 e cleavage of the urea side chain of the IPU demethylated products; a distinct aniline dioxygenase ge
231 sed at the onset of and during senescence to demethylate promoter, gene body or 3' UTR regions to act
233 Our results indicate that only a minority of demethylated promoters are associated with nucleosome re
234 l type and silent in the other tend to share demethylated promoters, while methylation differences be
236 Recombinant CYP82E4, CYP82E5v2, and CYP82E10 demethylated (R)-nicotine 3-, 10-, and 10-fold faster th
237 se 1 (LSD1) upregulates hypoxia responses by demethylating RACK1 protein, a component of hypoxia-indu
238 -1/0 pituitary cells with a combination of a demethylating reagent and a histone deacetylase inhibito
242 of demethylation of the Foxp3 Treg-specific demethylated region (TSDR) in circulating CD4(+) T cells
243 anced the demethylation of the Treg-specific demethylated region (TSDR) in the mouse Foxp3 gene and t
244 epigenetic differences in the Treg-specific demethylated region (TSDR) of Foxp3 and were more stable
245 Demethylation analysis of the Treg-specific demethylated region (TSDR) provides a more accurate asso
246 n, or methylation state of the Treg-specific demethylated region (TSDR) within the FOXP3 locus associ
248 ds on DNA demethylation at the Treg-specific demethylated region (TSDR), a conserved, CpG-rich region
249 hin the FOXP3 gene, called the Treg-specific demethylated region (TSDR), is considered the hallmark o
250 d by a completely demethylated Treg-specific demethylated region and showed alloantigen-specific supp
251 methylated regulatory T cell (Treg)-specific demethylated region Foxp3 gene are considered natural Tr
252 3 expression are characterized by a specific demethylated region in the FOXP3 gene (Treg-specific dem
253 By using demethylation of the Treg-specific demethylated region in the FOXP3 gene as a marker for nT
255 cells with a demethylated Treg-cell-specific demethylated region in the Foxp3 locus downregulated Fox
256 cells retained a demethylated Treg-specific demethylated region in the FOXP3 promoter, maintained ac
257 Assessment of regulatory T cell-specific demethylated region methylation status in 1-month biopsy
258 tion of CpG regions within the Treg-specific demethylated region of KO versus WT Tregs, suggesting th
261 rying highly demethylated Treg cell-specific demethylated region that configures committed Tregs stab
262 hylation of the CpG islands in Treg-specific demethylated region, CTLA-4 exon 2, and glucocorticoid-i
263 were demethylated at the FOXP3 Treg-specific demethylated region, indicative of Treg lineage stabilit
264 lated only in bona fide Tregs (Treg-specific demethylated region, TSDR) represents a reliable method
267 ion factors, are frequently localized in the demethylated regions of the promoters of numerous ripeni
269 +)CD127(-)FOXP3(+) T cells with a persistent demethylated regulatory T cell (Treg)-specific demethyla
271 ts also maintained their effector-associated demethylated status but acquired TEM-associated programs
272 panded with TAC, the marked loss of the TSDR demethylated status highlights the potential for loss of
273 However, native GcoAB has minimal ability to demethylate syringol (2,6-dimethoxyphenol), the analogou
275 accumulated in the nucleus and bound to and demethylated TCF4-associated histone H3K9 by interacting
276 ing important biomarker classes, such as C10 demethylated terpanes, alphaalphaalpha-steranes, and mon
277 ope systematics and co-occurrence with other demethylated terpenoids suggest a mechanistic connection
279 and the Msk1 kinase, which can respectively demethylate the repressive H3K9me3 mark and phosphorylat
280 cate the presence of an enzyme activity that demethylates the C13(2)-carboxymethyl group present at t
281 entified that in vitro MINA53 preferentially demethylates the histone substrate, H3K36me3 and that in
283 tion of the HERVs in patients; meanwhile DNA-demethylating therapy causes a small and heterogeneous e
284 e levels of H3K56me3, suggesting that dKDM4A demethylates this heterochromatic mark to facilitate rep
285 r elements that are evolutionarily young are demethylated to a milder extent compared to older elemen
286 the Helios-positive subset, carrying highly demethylated Treg cell-specific demethylated region that
288 (-) nTreg were characterized by a completely demethylated Treg-specific demethylated region and showe
290 T cells (Tconv), and possess a predominantly demethylated Treg-specific demethylated region of the FO
292 found that JMJD3 and KIAA1718 collaborate to demethylate trimethylated H3K27 (H3K27me3) on a subset o
295 stability and expression, which was able to demethylate usp28 promoter, reduced USP28 expression, fi
296 n 5,168 CpGs (39% age-methylated and 61% age-demethylated) which were characterized by high concentra
297 thoxy-substituted benzo[c]phenanthrenes were demethylated with BBr3 and oxidized to the o-quinones wi
299 We hypothesize that fish-derived MeHg is demethylated within the body, causing mass-dependent fra
300 on of adipogenesis and osteoblastogenesis by demethylating Wnt10a gene and upregulating its expressio