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1 (4)-epsilon-Cyt)] and their corresponding 2'-deoxynucleosides.
2 ates for oxidation than the corresponding 2'-deoxynucleosides.
3 xy-2'-deoxyguanosine and 8,5'-cyclopurine-2'-deoxynucleosides.
4 tics and product profile of QM reaction with deoxynucleosides.
5 e and thus explaining the specificity for 2'-deoxynucleosides.
6 and class II enzymes are highly specific for deoxynucleosides.
7 TK2 deficiency treated 1-49 months with oral deoxynucleosides.
8 riction by SAMHD1 was rescued by addition of deoxynucleosides.
9 ing deoxynucleoside triphosphates (dNTPs) to deoxynucleosides.
10 partially overcome by addition of exogenous deoxynucleosides.
11 was alleviated by the addition of exogenous deoxynucleosides.
13 Among 12 other TK2 patients treated with deoxynucleoside, 2 adults developed elevated liver enzym
15 tudies carried out on the AFB-FAPY bases and deoxynucleoside 3',5'-dibutyrates now establish that the
17 ith these modifications, coupling of each 2'-deoxynucleoside 3'-phosphoramidite to the growing oligod
19 eaction, boron-modified nucleotides, i.e. 2'-deoxynucleoside 5'-alpha-[P-borano]-triphosphates, are i
21 (RNR) converts nucleoside 5'-diphosphates to deoxynucleoside 5'-diphosphates and is expressed under i
24 ting CD4(+) T cells by reducing the cellular deoxynucleoside 5'-triphosphate (dNTP) concentration to
26 at manganese increases the rate constant for deoxynucleoside 5'-triphosphate insertion compared to ma
27 ns required for the reaction of the incoming deoxynucleoside 5'-triphosphate with the 3'-hydroxyl in
28 duction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates and uses coenzyme B12,
29 mer extension reaction utilizing 5'-amino-5'-deoxynucleoside 5'-triphosphates generates polynucleotid
32 he incorporation of benzimidazole-derived 2'-deoxynucleoside-5'-O-triphosphates ( BENZI: TP and BIM:
33 total six crystal structures of modified 2'-deoxynucleoside-5'-O-triphosphates (dNTPs) carrying modi
34 sized base-modified benzimidazole-derived 2'-deoxynucleoside-5'-O-triphosphates on DNA polymerases wh
35 iphosphate (dSpTP) and guanidinohydantoin-2'-deoxynucleoside-5'-triphosphate (dGhTP) are reported.
37 riphosphate lesions spiroiminodihydantoin-2'-deoxynucleoside-5'-triphosphate (dSpTP) and guanidinohyd
38 ) plays a critical role in the production of deoxynucleoside-5'-triphosphates (dNTPs), the building b
40 ant increases in the oxidatively damaged DNA deoxynucleoside 8-hydroxydeoxyguanosine, with the degree
41 chromatographic analysis of DNA digested to deoxynucleosides, about 60% of the Wilms tumors were fou
42 rly, Vpx-containing virus-like particles and deoxynucleosides added to the cells more than 24 h posti
44 ionic acid (BODIPY FL) was used to label the deoxynucleoside adducts N-(2'-deoxyguanosine-8-yl)-4-ami
46 linked DNA returned primarily the unmodified deoxynucleosides, along with 1-[N3-deoxycytidyl]-2-[N1-d
47 e recently reported that in the last step, L-deoxynucleoside analog diphosphates are phosphorylated b
48 ts attributed favorable phosphorylation of L-deoxynucleoside analog diphosphates by PGK to difference
49 mutations on the phosphorylation of L- and D-deoxynucleoside analog diphosphates was different from t
50 ted by 3-phosphoglycerate kinase, whereas, D-deoxynucleoside analog diphosphates were phosphorylated
51 explain the preference of PGK for L- over D-deoxynucleoside analog diphosphates, the kinetics of the
53 fluorescence of a set of four benzo-expanded deoxynucleoside analogs (xDNA) that maintain Watson-Cric
55 "lethal mutagenesis" driven by the class of deoxynucleoside analogs represented by 5-OH-dC could pro
56 HIV-1 reverse transcriptase (RT)-specific 2'-deoxynucleoside analogs that contain a clickable triple
57 y, several L- and D-configuration pyrimidine deoxynucleoside analogs were found to be potent antivira
58 Fd4C, L-FMAU, and L-ddC were compared with D-deoxynucleoside analogs, AraC, dFdC, and D-FMAU, and D-d
61 e in DMSO/THF gave the respective 2'- and 3'-deoxynucleoside analogues with beta-D-threo configuratio
62 ry of potent antiviral agents based on novel deoxynucleoside analogues with unusual bicyclic base moi
63 es of this enzyme and to study the effect of deoxynucleoside analogues, we have isolated and partiall
66 catalyzes the hydrolysis of all dNTPs to the deoxynucleoside and tripolyphosphate, which effectively
67 he results define the acidity of oxopropenyl deoxynucleosides and highlight its importance to their r
69 aced incorporation of (15)N into tryptophan, deoxynucleosides and pheophytin derived from chlorophyll
72 6-[chloro (5, 63%) or bromo (6, 80%)]purine deoxynucleosides, and 2',3',5'-tri-O-acetyladenosine (8)
75 hypoxanthine and 8-aza-6-thiohypoxanthine 2'-deoxynucleosides as well as methylated 2'-deoxynebularin
76 ivation parameters for the degradation of 2'-deoxynucleosides at 25 degrees C were determined by extr
77 '-deoxyadenosine, 4-methylbenzimidazole beta-deoxynucleoside (B), and 9-methyl-1H-imidazo[4,5-b]pyrid
80 We have focused our attention on the use of deoxynucleoside building blocks bearing non-natural base
81 specificity of the class I enzyme for purine deoxynucleosides can be traced to a loop (residues 48-62
82 es, which accept either purine or pyrimidine deoxynucleosides, class I enzymes are specific for purin
84 ase pairing, base stacking, or C2'-endo/anti deoxynucleoside conformations are perturbed significantl
90 sugar chloride in a nonpolar solvent give 2'-deoxynucleoside derivatives with N9 regiochemistry and e
91 des, 3'-O-methyl-substituted nucleosides, 3'-deoxynucleosides, derivatives with 4'-C-azido substituti
93 RB69 DNA polymerase and have shown that the deoxynucleoside diphosphate can be incorporated, in cont
96 of all the NTPs, has a low affinity for the deoxynucleoside diphosphates and cannot generate the dNT
97 le for converting nucleoside diphosphates to deoxynucleoside diphosphates, ensuring a balanced supply
101 Mutations that reduce the efficiency of deoxynucleoside (dN) triphosphate (dNTP) substrate utili
102 and in vivo, CpG DNA containing unnatural 3'-deoxynucleoside either within the CpG-dinucleotide or ad
105 f thymidines in A5 tracts by difluorotoluene deoxynucleoside (F), a non-polar molecule of the same si
106 e critical for phosphorylation of endogenous deoxynucleosides for DNA synthesis and exogenous nucleos
107 lication on encountering these pro-mutagenic deoxynucleosides four steps ahead of the primer-template
112 S/MS to measure multiple 8,5'-cyclopurine-2'-deoxynucleosides in a toxicologically important terrestr
114 ence properties of the purine and pyrimidine deoxynucleosides in organic solvents in the presence of
116 effect of 3'-deoxy-2'-5'-ribonucleoside (3'-deoxynucleoside) incorporation into CpG DNA on the immun
117 RCA1 mutations to repair 8,5'-cyclopurine-2'-deoxynucleosides indicates the involvement of BRCA1 in n
122 DNA shuffling of Drosophila melanogaster 2'-deoxynucleoside kinase, followed by FACS analysis, yield
128 eoxycytidine (dC), we hypothesized that: (1) deoxynucleosides might be the major active agents and (2
131 We investigated the safety and efficacy of deoxynucleoside monophosphate and deoxynucleoside therap
132 ide effect profiles and clinical efficacy of deoxynucleoside monophosphate and deoxynucleoside therap
133 slippage and dNTP stabilization followed by deoxynucleoside monophosphate incorporation and extensio
134 it is also found that transcripts containing deoxynucleoside monophosphates (dNMPs) are more poorly e
136 Because we observed rapid catabolism of the deoxynucleoside monophosphates to deoxythymidine (dT) an
137 ent and hydrolysis of the modified DNA to 2'-deoxynucleosides, N(2)-BPDE-dG adducts formed at the [(1
139 The oxidized lesions observed include the 2'-deoxynucleosides of 8-oxo-7,8-dihydroguanine (dOG), spir
140 nst varicella-zoster virus (VZV) shown by 2'-deoxynucleosides of furo[2,3-d]pyrimidin-2(3H)-one and r
142 thesized and used in the preparation of four deoxynucleoside phosphoramidites 28 and 65-67, plus the
144 ch of seven contiguous 3',5'-linked oligo-2'-deoxynucleoside phosphorothioate linkages in the center
145 thioate linkages gives 2',5'-linked oligo-3'-deoxynucleoside phosphorothioate ODNs that exhibit signi
148 able reactions at the C-2 position of purine deoxynucleosides proceed with less sensitivity to the li
149 its dA N1 adduct yield a similar profile of deoxynucleoside products when treated with an equimolar
151 and 9-methyl-1H-imidazo[4,5-b]pyridine beta-deoxynucleoside (Q), were used to examine the importance
152 oxycytidine kinase (dCK) is to phosphorylate deoxynucleosides required for DNA synthesis, with the ex
153 he 3'-hydroxyl group from potent anti-VZV 2'-deoxynucleosides results in loss of the VZV activity, bu
156 e NO.-induced deamination rate constants for deoxynucleosides, single- and double-stranded oligonucle
158 INTERPRETATION: Our studies demonstrate that deoxynucleoside substrate enhancement is a novel therapy
164 modified bases including 8,5'-cyclopurine-2'-deoxynucleoside tandem lesions were identified and quant
168 by secretion of deoxycytidine, but not other deoxynucleosides, through equilibrative nucleoside trans
169 inistered deoxynucleoside monophosphates and deoxynucleoside to 16 TK2-deficient patients under a com
170 beta was completely antagonized by providing deoxynucleosides to bypass the block in ribonucleotide r
172 hosphorolysis in 6-oxypurine nucleosides and deoxynucleosides to form purine and alpha-D-phosphorylat
174 ly protected 5'-O-(4, 4'-dimethoxytrityl)-2'-deoxynucleosides to yield 3'-O-phosphinoamidite reactive
176 iomarker of disease severity and response to deoxynucleoside treatment in patients with thymidine kin
177 ion, we show evidence of clinical benefit of deoxynucleoside treatment, especially when treatment is
178 the 110-to-115 loop region, which may affect deoxynucleoside triphosphate (dNTP) binding and polymera
179 upport catalysis, and Ca(2+), which supports deoxynucleoside triphosphate (dNTP) binding but not cata
181 er of the HBV reverse transcriptase (RT)-DNA-deoxynucleoside triphosphate (dNTP) complex, based on th
182 onocytic cells by reducing the intracellular deoxynucleoside triphosphate (dNTP) concentrations.
183 Analogues were examined both as incoming deoxynucleoside triphosphate (dNTP) derivatives and as t
186 Here, we investigated the pre-steady-state deoxynucleoside triphosphate (dNTP) incorporation kineti
187 can be explained by decreased sensitivity to deoxynucleoside triphosphate (dNTP) inhibition of the nu
188 uently in resting cells, likely due to lower deoxynucleoside triphosphate (dNTP) levels and the prese
194 not contact the DNA template or the incoming deoxynucleoside triphosphate (dNTP) substrate, is locate
196 zing the template-directed polymerization of deoxynucleoside triphosphate (dNTP) substrates onto the
198 anscriptase with a DNA template:primer and a deoxynucleoside triphosphate (dNTP), and the crystal str
199 a dideoxy-terminated primer and an incoming deoxynucleoside triphosphate (dNTP), does not form the c
201 h the catalytic residues of RT, the incoming deoxynucleoside triphosphate (dNTP), or the primer-templ
202 in reverse transcriptase (RT) that alter the deoxynucleoside triphosphate (dNTP)-binding pocket, incl
203 ast to previous suggestions that Dpo4 uses a deoxynucleoside triphosphate (dNTP)-stabilized misalignm
207 ts of the purine substrates ADP and GDP, the deoxynucleoside triphosphate allosteric effectors dGTP a
210 m our laboratory have shown that the natural deoxynucleoside triphosphate and the NNRTI can simultane
211 constants of transitions that lead to strong deoxynucleoside triphosphate binding prior to chemistry.
212 e effect of mutations in the YXDD motif, the deoxynucleoside triphosphate binding site, the thumb dom
213 ismatched nucleotides from the ternary E.DNA.deoxynucleoside triphosphate complex and by the use of s
214 ccur in a fully assembled DNA polymerase-DNA-deoxynucleoside triphosphate complex with two canonical
215 relatively inactive except when the cellular deoxynucleoside triphosphate concentrations are high, as
216 Thus, rather large increases in fidelity of deoxynucleoside triphosphate insertion and mispair exten
218 r results suggest that motif B influences RT-deoxynucleoside triphosphate interactions at multiple st
220 d by the direct interaction of CD81 with the deoxynucleoside triphosphate phosphohydrolase SAMHD1.
222 ponse to genotoxic stress by maintaining the deoxynucleoside triphosphate pools necessary for error-p
226 ion by the lentivirus vector was improved by deoxynucleoside triphosphate pretreatment of the vector
227 oredoxin, a primer-template, and an incoming deoxynucleoside triphosphate reveals a putative hydrogen
228 ring the balance between DNA replication and deoxynucleoside triphosphate synthesis in the case of nd
229 than the Exo mutants, converted the incoming deoxynucleoside triphosphate to its monophosphate, indic
230 1 has been identified as the first mammalian deoxynucleoside triphosphate triphosphohydrolase (dNTPas
235 , potentially involving rearrangement of the deoxynucleoside triphosphate-binding pocket residues.
236 titutions near the polymerase active site or deoxynucleoside triphosphate-binding site of HIV-1 RT in
238 P, XTP, dXTP, or 6-hydroxylaminopurine (HAP) deoxynucleoside triphosphate] into nucleic acids is prev
239 catalyzes the hydrolysis of nucleoside- and deoxynucleoside-triphosphate (NTP) substrates by nucleop
240 d expression, decreasing the availability of deoxynucleoside triphosphates (dNTP) and thus HIV-1 reve
241 large number of nucleoside analogues and 2'-deoxynucleoside triphosphates (dNTP) have been synthesiz
243 cellular enzyme that depletes intracellular deoxynucleoside triphosphates (dNTPs) and inhibits the a
244 4), NL4-3 virions, incubated with or without deoxynucleoside triphosphates (dNTPs) and/or the polyami
248 t cell type contains a very low level of the deoxynucleoside triphosphates (dNTPs) required for provi
249 phosphohydrolase that degrades intracellular deoxynucleoside triphosphates (dNTPs) to a lower level t
250 (SAMHD1) is a triphosphohydrolase converting deoxynucleoside triphosphates (dNTPs) to deoxynucleoside
252 icted infection by hydrolyzing intracellular deoxynucleoside triphosphates (dNTPs), lowering their co
253 , is impaired due to limited availability of deoxynucleoside triphosphates (dNTPs), which are needed
256 of a 13/20mer primer/template (D) to detect deoxynucleoside triphosphates (N)-dependent conformation
258 erize efficiently with low concentrations of deoxynucleoside triphosphates and seems to be able to ex
259 d d4TMP, even when relatively high levels of deoxynucleoside triphosphates are present in the reactio
260 work by depleting the pool of intracellular deoxynucleoside triphosphates but has also been reported
261 , suggesting that demethylation of alkylated deoxynucleoside triphosphates by AlkB could have biologi
265 NA polymerases catalyze the incorporation of deoxynucleoside triphosphates into a growing DNA chain u
266 racellular enzyme that specifically degrades deoxynucleoside triphosphates into component nucleoside
267 e (RNAP) for ribonucleoside triphosphates vs deoxynucleoside triphosphates inverted question mark(kca
268 magnesium, potassium, sodium, Tris ions, and deoxynucleoside triphosphates on melting profiles of dup
269 2 microM, had no detectable activity against deoxynucleoside triphosphates or other typical Nudix hyd
270 y with different primers and compositions of deoxynucleoside triphosphates to differentially monitor
271 stimulated triphosphohydrolase that converts deoxynucleoside triphosphates to the constituent deoxynu
272 converting ribonucleoside triphosphates and deoxynucleoside triphosphates to their respective diphos
273 drolyze all eight of the canonical ribo- and deoxynucleoside triphosphates to their respective monoph
276 g sequences, under conditions where primers, deoxynucleoside triphosphates, and enzyme are not limiti
277 th various triggers, including S100 cytosol, deoxynucleoside triphosphates, detergents, NaCl, and buf
278 in the presence of a normal concentration of deoxynucleoside triphosphates, leading to a high toxicit
279 hydrolase that depletes the cellular pool of deoxynucleoside triphosphates, thereby preventing revers
286 eration of a wide variety of nucleoside (and deoxynucleoside) triphosphates (NTPs) from their cognate
287 een proposed that SAMHD1 is a dGTP-dependent deoxynucleoside triphosphohydrolase (dNTPase) that restr
288 HD domain-containing protein 1 (SAMHD1) is a deoxynucleoside triphosphohydrolase (dNTPase) with a nuc
291 HD domain-containing protein 1 (SAMHD1) is a deoxynucleoside triphosphohydrolase that restricts the r
292 inoquinoline- and 2-aminoquinazoline-based C-deoxynucleosides (TRIPsides) that are designed to be inc
293 en condensed with appropriately protected 2'-deoxynucleosides using 4,5-dicyanoimidazole to yield the
294 Ts catalyze N-glycosidic bond cleavage of 2'-deoxynucleosides via a covalent 2-deoxyribosyl-enzyme in
296 ion of lipophilic alkyl furano pyrimidine 2'-deoxynucleosides, we now report that 2',3'-dideoxy sugar
299 the expanded adenine, we tested a formamide deoxynucleoside, which Leonard proposed as a shortened t