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1 stereochemistry, and flexibility in the psi dihedral angle.
2 al cation followed by a decrease in the flap dihedral angle.
3 ith a single repetitive (+)-gauche interunit dihedral angle.
4 s follow a squared cosine trend with varying dihedral angle.
5 ations of the pKa as a function of the C6-C7 dihedral angle.
6 vealed no preferred C-X...C horizontal lineO dihedral angle.
7 two scores of correlation between sidechain dihedral angles.
8 motifs and the long-range correlation of the dihedral angles.
9 with Pro329 assuming canonically restricted dihedral angles.
10 h distinct conformations around the CC-SS-CC dihedral angles.
11 hexamer shape, as defined by subunit-subunit dihedral angles.
12 l J(H-H) coupling constants as a function of dihedral angles.
13 selectivity than related ligands with larger dihedral angles.
14 stance restraints, 12 hydrogen bonds, and 44 dihedral angles.
15 , on average, are observed at all remaining dihedral angles.
16 obtained by rigid rotation of all side-chain dihedral angles.
17 conformation, in agreement with the obtained dihedral angles.
18 the phenyl results in increased phenyl-vinyl dihedral angles.
19 ed with longer DNA binding sites and smaller dihedral angles.
20 accompanied by strong flattening of the ring dihedral angles.
21 f the 1.1-A X-ray structure as input for the dihedral angles.
22 ylene rings, as determined by their relative dihedral angles.
24 correlates (3)J(PH) with phosphorus-hydrogen dihedral angle, a recently reported glycine-derived 1,3,
25 o isomers of cyclo-l-cystine differ in their dihedral angle about the disulfide bond; the M isomer (w
26 n at one end and a hexagon at the other, the dihedral angle about the edge increases, producing a dih
28 a pentagon to a hexagon has a DAD, since the dihedral angles about the edge broaden from its pentagon
29 2]paracyclophane resulting from larger amide dihedral angles accompanying transannular hydrogen bondi
32 ameter metric based on the comparison of the dihedral angles along all edges of the coordination poly
33 In the simulations, the sampling of all five dihedral angles along the linker was enhanced, so that b
37 rees) in the characteristic hydrocarbon-base dihedral angles (alpha' and beta') as well as the glycos
38 diyne-bridged oligomers, where the preferred dihedral angles amount to roughly 30 degrees and 0 degre
39 zation regimes as a function of the backbone dihedral angle and analogy is drawn to polycyclic pai-el
40 nformational reorganization of the distorted dihedral angle and distance between amide units at chemi
43 troscopy NMR studies suggest that the biaryl dihedral angle and the electronic nature of ortho-substi
44 he correlation (P < 0.001) between the dione dihedral angle and the preferential inhibition of either
45 ents, including 41 restraints on 19 backbone dihedral angles and 35 (13)C-(15)N distances between 3 a
46 these two regions allows for variability in dihedral angles and concomitant differences in chain con
47 multidimensional picture involving backbone dihedral angles and distance between hydrogen bond donor
48 ar the target base in position to rotate the dihedral angles and flip the base out of the DNA duplex.
52 erize the various properties of the backbone dihedral angles and secondary structural motifs of the g
54 bosomal interfaces with analysis of arginine dihedral angles and structural (suite) classification of
55 t-mean-square fluctuations, and variation in dihedral angles), and variability in designed structures
61 ecay rates of the angle between the dipoles, dihedral angles, and distance autocorrelations obtained
62 a)-C(alpha) virtual bond lengths, angles and dihedral angles, and the X-ray structure is best-fitted
63 g dynamics, water permeability (p(f)), and a dihedral angle are defined as functional order parameter
65 nformer families differing in characteristic dihedral angles are identified within a range of 16 kcal
68 f high-quality correlation plots between the dihedral angles around a residue and those between seque
69 tructure with the same energy, for which the dihedral angles around the flexible ring have opposite s
70 ts deviate significantly from planarity with dihedral angles around the imide group reaching ca. -150
72 ations can arise either because of incorrect dihedral angle assignments or secondary structural prope
74 rted here as changes in O-atom locations and dihedral angles, become stronger for larger, more substi
75 unique Archimedean solid with all edges and dihedral angles being equal, the icosidodecahedron, and
76 ransition state also suggests that a minimum dihedral angle between C-H bonds and Pd-OAc bonds is cru
78 ndence of the charge-transfer rates upon the dihedral angle between donor and acceptor stilbenes.
80 nconventional approach, a fine-tuning of the dihedral angle between the C4 phenyl and the dihydropyri
83 ose to perpendicular orientation (the actual dihedral angle between the planes of the imidazole ligan
84 in close to parallel orientation (the actual dihedral angle between the planes of the imidazole ligan
85 These structural studies indicate that the dihedral angle between the two planes formed by the two
86 he distance between the chromophores and the dihedral angle between their transition dipoles [Deltaep
89 oops 3 and 5 have ribbon-like structure with dihedral angles between neighboring rings near zero.
91 has been placed on either dimers with large dihedral angles between the constituent planar monomeric
92 of electronic coupling is controlled by the dihedral angles between the terephthalate C6 ring and th
93 the unusual match between residue-level PP2 dihedral angle bias in the unfolded state and PP2 helica
94 drogen atoms on the ring with identical PNCH dihedral angles but measured coupling constants of appro
95 calized perturbation in hydrogen bonding and dihedral angles, but the hydrophobic residue of a G4G in
96 ys along pai-conjugated planes when at a low dihedral angle by shortening the end-to-end distance of
97 solution potential is built as a function of dihedral angles by a smoothing procedure and continuous
98 crocycles are coupled such that changing one dihedral angle can significantly affect other dihedral a
99 (MC) motions [represented by coarse-grained dihedral angles (CGDAs) gamma(n) based on four successiv
101 n energies identify a region for C4-C5-C6-N2 dihedral angle changes where deshielding of C4 is correl
105 itative understanding of why some side-chain dihedral angle combinations are highly populated and oth
106 cids in peptides and proteins adopt specific dihedral angle combinations; however, we still do not ha
107 ilane CH(2)Si(4)Me(8) (1), with the smallest dihedral angle, comparison of MCD with absorption spectr
110 distal end chain order with primarily trans dihedral angle conformations; the extension of these ord
111 a knowledge-based potential for a residue's dihedral angles, considering the identity and conformati
112 library, the backbone preferentially adopts dihedral angles consistent with the polyproline II confo
113 ogen bonding, residual dipolar coupling, and dihedral angle constraints were used to calculate a set
117 proximately 70% of both the distance and the dihedral-angle constraints, and possesses the characteri
118 5, in addition to changes of the C4-C5-C6-N2 dihedral angle could be consistent with visible absorpti
120 nstrate that the mean-square displacement of dihedral angles, defined by 4 successive C(alpha) atoms,
123 lems within the molecules as well as updated dihedral-angle diagnostics, and it can calculate and dis
124 ometric constraint-exclusion of head-to-tail dihedral angle discrepancies (DADs)-explains this limite
127 and n variables, where the equations set the dihedral angle discrepancy about different types of edge
129 ose of this study was to analyze and compare dihedral angle distribution functions of the side chains
132 The 2D spectra are well simulated using dihedral angle distributions around the average values (
133 ntrast, we show that the observed side-chain dihedral angle distributions for both Val and Thr can be
135 observe striking differences in the backbone dihedral angle distributions for the protein unfolded un
136 ates how the force dependence of the protein dihedral angle distributions give rise to the worm-like
137 l transmission in peptides and proteins from dihedral angle dynamics observed in extended molecular d
138 in contains three bonds, two angles, and one dihedral angle; effective harmonic bonds are used to des
139 B(I) and B(II) associated with the backbone dihedral angles epsilon and zeta but also coupled change
141 ally stable, and we find good agreement with dihedral angles estimated from solid-state NMR experimen
142 ackbone is highly extended, with phi and psi dihedral angles favoring the beta or P(II) regions.
144 proteins arising due to intrinsic varphi-psi dihedral angle fluctuations dictate the course of protei
147 This was unexpected because the range of dihedral angles for arginine is limited relative to glyc
149 approach also produces geometric parameters (dihedral angles for the beta-methylene hydrogens) that s
150 mophore, including rotation of the (C11-C12) dihedral angle from -11 degrees in the 11-cis isomer to
153 directional statistics applied to the set of dihedral angles from the second and third residues of ea
154 ihedral angle can significantly affect other dihedral angles, further complicating the situation.
155 nds containing biaryl backbones with smaller dihedral angles generate catalysts that react with highe
157 UVRR nuW3 mode with the tryptophan chi(2,1) dihedral angle has been extended to a full, 360 degrees
158 landscape as a function of the corresponding dihedral angles has been determined for each glycosidic
159 tures via the representations using backbone dihedral angles has recently achieved significant progre
160 ite with restricted rotation of the backbone dihedral angles; however, it does not have a well-define
161 ate, as measured by deviations of side-chain dihedral angles; however, often due to multiple atomic c
162 has mostly been on constraining the backbone dihedral angles; however, the correct orientation of the
163 energy profile generated by varying the psi dihedral angle in Ace-Pro-NMe indicates that the conform
164 sed conformational energy of the C4-C5-C6-N2 dihedral angle in the intact protein in the Pr state.
165 tions show that variation of the histidines' dihedral angles in coordinating Cu controls the coupling
167 onic effects that preorganize the main-chain dihedral angles in the conformation found in the triple
169 lymers as a result of covalently constrained dihedral angles in the substituents (not the backbone),
170 ed by an extra core twist, as the peripheral dihedral angle increases from 16.5 degrees in 1 to 20.7
171 ith suitable bridge lengths, a change in the dihedral angle induced a switch of the binaphthyl units
174 complex are not coplanar, and the resulting dihedral angle is consistent with negative supercoiling.
177 membered lactone the smallest Pd/endo-beta-H dihedral angle is observed for a conformer with a compar
178 ger range of conformations; however, the Phi dihedral angle is restricted to values smaller than 30 d
179 yramidal coordination, where the Cl-Si-Si-Cl dihedral angle is twisted by 43.3 degrees (calcd 45.9 de
181 ctin dimers revealed that changes in subunit dihedral angle lead to intersubunit bending or twist, su
182 a Schellman motif to cap an alpha-helix; its dihedral angles lie in the right side of the Ramachandra
183 ment, measured by phi, psi, chi1, and pseudo-dihedral angles more accurately classify kinase crystal
185 rapid algorithm using only single (phi,psi) dihedral angle moves also generates tertiary structures
189 e rotation around the F-C-S horizontal lineO dihedral angle of (fluoromethyl)methyl sulfoxide was eva
190 about the disulfide bond; the M isomer (with dihedral angle of -90.1 degrees) is found to be slightly
191 a butterfly-shaped geometry with a U-C(2)-U dihedral angle of 112.7 degrees and a U-U distance of 3.
192 onformation for ribose and a H1'-C1'-C2'-H2' dihedral angle of 53 degrees at the transition state.
193 he two bases are found not to be coplanar; a dihedral angle of 6.1 degrees between the base planes is
195 , BIT-(NHexyl)2 is a twisted molecule with a dihedral angle of 78 degrees between the charged planes.
200 These "ABA" states correspond to consecutive dihedral angles of -55 degrees /+130 degrees /-55 degree
202 e, previous studies have suggested that some dihedral angles of amino acids in specific regions of th
203 rapharmacophore point distances, angles, and dihedral angles of different analogues spread over wide
204 peptide mimetics to enumerate the side-chain dihedral angles of leucine (Leu) and isoleucine (Ile), a
206 llowing three issues concerning the backbone dihedral angles of protein structures are presented.
208 lly do not coincide with canonical values of dihedral angles of residues in parallel or antiparallel
211 core was shown to be highly planar where the dihedral angles of the component pyrrole, furan and inde
213 erms of: 1), a local correlation between the dihedral angles of the guest amino acid and the proline
216 p between Raman frequencies and Ramachandran dihedral angles of the polypeptide backbone indicates th
219 d DFGinter or intermediate) and the backbone dihedral angles of the sequence X-D-F, where X is the re
220 used a basis set that includes all internal dihedral angles of the system with the exception of the
223 e all down (Cgamma-endo), and the varphi/psi dihedral angles of the Xaa 3(S)Hyp residues are also sim
226 angle theta (Y = O, N, C) and lone pair-PYC dihedral angle omega shows similar theta,omega surfaces
227 ion of the effects of conformation (backbone dihedral angle) on electron delocalization in infinite s
229 l as the rotation of one or a few side-chain dihedral angles or involve concerted motions in larger p
230 alysis yields structural improvements at two dihedral angles over prior NMR predictions with differen
232 This conclusion arises from considering the dihedral angle patterns within hexamers belonging to nat
233 al energy surface corresponding to different dihedral angles phi; three yielded energy minima, and tw
237 articles interact via harmonic potential and dihedral angle potential and are subject to a constant a
240 whose value signals the extent to which the dihedral angle propensities differ from typical structur
244 occurs mainly through tilting of the Si-O-Si dihedral angle rather than shortening of the Si-O bond,
245 ank shows that sterically hindered ranges of dihedral angle reduce the possible chi(2,1) to one or tw
246 ared to the rapid fluctuations of individual dihedral angles, reflecting the collective nature and la
248 r modeling based on NMR-derived distance and dihedral angle restraints and molecular dynamics calcula
249 mics calculations restrained by distance and dihedral angle restraints obtained from NMR spectroscopy
250 collagen model peptides provide distance and dihedral angle restraints that allow determination of mo
251 d in combination with (1)H-(1)H distance and dihedral angle restraints to determine the protein backb
254 particular, a more acute O(oxo)-Mo-S(Cys)-C dihedral angle results in increased cysteine thiolate S
255 ecture combined with thermal fluctuations of dihedral angles results in large variations of local ele
256 the fluorine to the diamine ring hinders the dihedral angle rotation between the benzene and the diam
257 ns indicate that intrachain interactions and dihedral angle rotation correlate with the presence of i
258 recaptured to a large measure using backbone dihedral angle sampling that includes nearest neighbor e
259 ses as a function of the varphi,psi-backbone dihedral angles show that the expected value deviates by
260 e most populated conformers exhibit backbone dihedral angles similar to those of a PPII geometry.
261 that accounts for (i) pseudo-dihedral and/or dihedral angle similarity, (ii) nucleotide sequence simi
262 (3)J(CC) and (3)J(CN) couplings to occur for dihedral angles slightly smaller than 180 degrees, parti
263 ation enhancement (PRE) distance restraints, dihedral angle, small-angle X-ray scattering, residual d
264 Configurational entropies determined in dihedral angle space for each amino acid type are accura
265 ackbone torsional mobility in the varphi-psi dihedral angle space, we used a model intrinsically diso
269 , no correlations are found between backbone dihedral angles that are separated by more than one tors
270 rare cases, they involve sequentially remote dihedral angles that form sparse clusters, suggesting a
271 eries of biaryl cation radicals with varying dihedral angles that the hole stabilization shows two di
272 oupling constants both as a function of PYCH dihedral angle theta (Y = O, N, C) and lone pair-PYC dih
273 is sequentially added to tune the inter-ring dihedral angle theta between the bipyridine and the aryl
274 bulk significantly increases the inter-ring dihedral angle theta, is attributed to the effects of li
275 along the coordinate of the central ethylene dihedral angle (theta) from the cis Franck-Condon region
276 en and the unpaired electron at C2 shows the dihedral angle to be 6 degrees, unlike the value of 77 d
277 ng the U-O(peroxo) bonds causes the U-O(2)-U dihedral angle to be bent, and it is this inherent bendi
278 aussian bias is applied with driver bond and dihedral angles to optimize the sampling efficiency.
281 d DFT calculations of biaryls with different dihedral angles unequivocally support that a crossover f
282 ectly predicting 69.1% of all the side-chain dihedral angles using a stringent tolerance criterion of
283 interactions with the host hardly affect the dihedral angles, validating that the host is an ideal me
285 f XAO, where, for each residue, the backbone dihedral angle varphi was constrained by using the repor
287 he Haasnoot-Altona equation to calculate the dihedral angle (varphi) between the respective vicinal p
288 n folding using the distribution of backbone dihedral angles (varphi,psi) obtained from an experiment
289 orrelated with the ground-state phenyl-vinyl dihedral angle, varphi, planar styrenes having barriers
291 cis-chelating phosphine ligands (41 degrees dihedral angle) via a restricted alkyne-terminal startin
292 ino acid solvent-accessible surface area and dihedral angles were combined with the RA and PLB to obt
293 he conditional activities between side-chain dihedral angles were computed using the output of micros
294 r about the nominal C5 axis by an angle phi (dihedral angle) were performed using the B3PW91 function
295 delocalization to hopping occurs at a unique dihedral angle where the electronic coupling (Hab ) is o
296 alization in this core is inhibited by large dihedral angles, which hinders effective pi overlap.
297 iral structures with a broad distribution of dihedral angles, which may be explored as chiral ligands
298 s are consistent with a cos(2) dependence on dihedral angle, with no detectable angle-independent ind