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4 retrotransposition assay that identified the double-stranded break (DSB) repair and Fanconi anemia (F
8 isomerases regulate DNA topology by making a double-stranded break in one DNA duplex, transporting an
12 e achieved upon repair of CRISPR-induced DNA double-stranded breaks (DSBs) by homology-directed repai
13 tenance of telomeres and rDNA, and repair of double-stranded breaks (DSBs) induced by genotoxins with
15 plex) are similarly deficient in joining DNA double-stranded breaks (DSBs) with hairpinned termini.
16 DR) encompasses the cellular response to DNA double-stranded breaks (DSBs), and includes recognition
19 a DNA helicase protecting against G4 induced double-stranded breaks and concomitant loss of cohesion,
21 ed meiotic gene transcription, impairment of double-stranded breaks and pairing between homologous ch
22 hromosomes of these bacteria was achieved by double-stranded breaks made by heterologous I-CeuI endon
23 f microbial DNA with CRISPR-Cas9 to generate double-stranded breaks near the targeted sequences great
24 ysis of germline transcripts, examination of double-stranded breaks using biotin-labeling DNA break a
26 nt depressants capable of rapidly denaturing double stranded DNA (dsDNA) linkers, and 8 compounds are
27 cal sensor for detection of acrylamide using double stranded DNA (dsDNA)/Hemoglobin (Hb)-modified scr
28 ubiquitin ligase is activated in response to double stranded DNA breaks (DSBs) where it mono-ubiquiti
29 distal' face, three statistically disordered double stranded DNA molecules bind across the proximal f
32 uence homology, the major capsid proteins of double-stranded DNA (dsDNA) bacteriophages, some archaea
33 e-induced DNA adducts, can be converted to a double-stranded DNA (dsDNA) form by using appropriate tr
34 interferons (IFNs) and nucleosome-associated double-stranded DNA (dsDNA) fragments (nsDNA) are the ha
39 ies of small single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA) have been measured by capill
40 sport measurements through single 30-nm-long double-stranded DNA (dsDNA) molecules with an experiment
41 system to answer fundamental questions about double-stranded DNA (dsDNA) packaging by viruses that ha
42 ormation of infectious virions in the tailed double-stranded DNA (dsDNA) phages, herpesviruses, and a
46 ssDNA-RecA filament searches for homologous double-stranded DNA (dsDNA) to use as a template for the
47 rsaria chlorella virus-1 (PBCV-1) is a large double-stranded DNA (dsDNA) virus that infects the unice
49 ntermediates and it is unclear whether large double-stranded DNA (dsDNA) viruses may be similarly sus
50 d that SN1-type agents preferably mutagenize double-stranded DNA (dsDNA), and the mutation signature
52 r on single-stranded DNA (ssDNA) compared to double-stranded DNA (dsDNA), raising a key conceptual qu
53 nsible for the sensing of aberrant cytosolic double-stranded DNA (dsDNA), which is a hallmark of canc
54 AcrVA4 and AcrVA5 inhibit recognition of double-stranded DNA (dsDNA), with AcrVA4 driving dimeriz
55 ng interface exclusively occupies the strong double-stranded DNA (dsDNA)-binding surface on cGAS and
56 se in base editing requires the unwinding of double-stranded DNA (dsDNA)-for example by a CRISPR-Cas9
62 iotic recombination intermediates by nicking double-stranded DNA adjacent to the junction points(9).
65 terminal domain displays strong affinity for double-stranded DNA and is sufficient for the accumulati
66 king and unstacking reactions in single- and double-stranded DNA and thus may help to define the mole
68 fluorescence which was slightly enhanced in double-stranded DNA as compared to single-stranded oligo
70 for the capsid shell assembly of many tailed double-stranded DNA bacteriophages, some archaeal viruse
73 ed that both affect the dynamic features and double-stranded DNA binding properties of Mre11, but in
75 t, independently of its nucleotide sequence, double-stranded DNA binds to a specific helix of the vWF
76 method, which predicts the extent to which a double-stranded DNA break site will utilize the microhom
77 are particularly susceptible to formation of double-stranded DNA breaks (DSBs) arising from physiolog
78 and acceptor genomic sequences subjected to double-stranded DNA breaks (DSBs) made by programmable n
79 predictably and independent of Cas9-induced double-stranded DNA breaks (which causes substantial ind
82 tumours are often deficient in the repair of double-stranded DNA breaks by homologous recombination(8
83 of linked loci is limited as multiple nearby double-stranded DNA breaks created by Cas9 routinely res
86 gly, CSR induced by staggered but not blunt, double-stranded DNA breaks was impaired by SAMHD1 deplet
87 parallel with CRISPRi/a, which do not induce double-stranded DNA breaks, revealed that a distinct set
89 se activity against both single-stranded and double-stranded DNA but not RNA under the conditions tes
91 how that its packaging series initiates with double-stranded DNA cleavages that are scattered across
93 resent the structure of CcrM in complex with double-stranded DNA containing the recognition sequence.
94 ranscribes its RNA genome and integrates the double-stranded DNA copy into a host cell chromosome.
95 tion of the AIM2 inflammasome in response to double-stranded DNA damage triggers the production of cy
98 or dissociation and release of SP during the double-stranded DNA genome packaging step accompanying p
101 edrovirus is an insect virus with a circular double-stranded DNA genome, which, among other multiple
102 endogenous reverse transcription to produce double-stranded DNA genomes, which sometimes looped out
104 modified mC residues in single-stranded and double-stranded DNA in vitro, while the extent of the re
105 lization microscopy (BALM) using fluorescent double-stranded DNA intercalators and optical astigmatis
106 ds, the resulting brightness of 2CNqA inside double-stranded DNA is the highest reported for a fluore
108 In comparison to spCas9, miCas9 enhances double-stranded DNA mediated large size gene knock-in ra
110 sitive charges on the inner rim of helicoid, double-stranded DNA molecules (dsDNA) could interact wit
111 he capture rate and translocation of 1-5 kbp double-stranded DNA molecules through solid-state nanopo
112 ge polarization and charge transport through double-stranded DNA of various lengths and through doubl
114 in resistance to 14 phylogenetically diverse double-stranded DNA phages using two model Escherichia c
116 ands of individual data points per minute on double-stranded DNA standard (dsDNA) samples containing
118 uvC active site to make RNA-guided breaks in double-stranded DNA substrates, an activity essential fo
119 orm programmable endonucleolytic cleavage of double-stranded DNA substrates, showing enhanced activit
122 through single-stranded loops embedded in a double-stranded DNA template and is programmed by a set
123 E2 Y138.IMPORTANCE Papillomavirus (PV) is a double-stranded DNA tumor virus infecting the cutaneous
125 During cell division, FtsK translocates double-stranded DNA until both dif recombination sites a
130 but recent evidence suggests that some large double-stranded DNA viruses may also endogenize into the
132 lve the atomic structures of two filamentous double-stranded DNA viruses that infect archaeal hosts l
134 us expression of a cloned A* gene.IMPORTANCE Double-stranded DNA viruses typically package their geno
137 he portal protein is a key component of many double-stranded DNA viruses, governing capsid assembly a
139 igner DNA nanoparticles are constructed from double-stranded DNA with cytosine-rich stick ends (C-mon
140 with the presence of pathogenic anti-dsDNA (double-stranded DNA) antibodies, and provided spontaneou
141 ith similar efficiencies in both single- and double-stranded DNA, 1-methyladenine is preferentially r
143 g activities of aTFs for small molecules and double-stranded DNA, here we develop a simple, supersens
144 in which viral RNA genome is converted into double-stranded DNA, is that it is slow and non-processi
145 specifically bound to cGAS independently of double-stranded DNA, resulting in a non-competitive inhi
149 pesvirus infection to increase the levels of double-stranded DNA-reactive antibodies at the peak of v
162 the HRP3 PWWP domain in complex with various double-stranded DNAs with/without bound histone peptides
165 1 and STAT2 resulting in upregulation of the double stranded (ds)RNA sensor proteins RIG-I and MDA5,
168 Hfq is also found in the nucleoid and binds double-stranded (ds) DNA with a slight preference for A-
170 9(134-144), as well as anti-nuclear and anti-double-stranded (ds)DNA antibodies that are characterist
171 st innate immune responses against cytosolic double-stranded (ds)DNA arising from genotoxic stress an
172 icative helicase CMG is a closed ring around double-stranded (ds)DNA at origins yet must transition t
173 ambda2/3 in response to challenge with RV or double-stranded (ds)RNA mimic, Poly Inosinic-polycytidyl
174 ng shrimp viruses by using sequence-specific double-stranded (dsRNA) designed to knock down key viral
179 hesis protocol, we achieved an unprecedented double-stranded hexagonal cycloarene containing 108 sp(2
181 lock House virus and Nodamura virus; and the double-stranded L-A virus of yeast, are involved in inte
182 e indicated the contribution of encapsidated double-stranded linear DNA and replication intermediates
184 d DNA template and is programmed by a set of double-stranded linkers that specify pairwise interactio
187 We show that Dvl DIX forms antiparallel, double-stranded oligomers in vitro, and that Dvl in cell
188 t is initiated by the binding and nicking of double-stranded origin of replication by a replication i
189 to insert sulfur into the DNA backbone as a double-stranded phosphorothioate (PT) modification, and
193 ry into the nucleus of the host cell, linear double-stranded retroviral DNAs are either integrated in
194 s B virus (HBV) is a unique, tiny, partially double-stranded, reverse-transcribing DNA virus with pro
195 an ADAR2 comprising its deaminase domain and double stranded RNA binding domain 2 (dsRBD2) bound to a
196 st SARS-CoV spike protein and nucleoprotein, double stranded RNA, and RNA probe for spike genes were
197 e gene I (RIG-I)-like receptors detect viral double-stranded RNA (dsRNA) and 5'-triphosphorylated RNA
198 (OAS) are innate immune sensors of cytosolic double-stranded RNA (dsRNA) and play a critical role in
201 Immunofluorescence assays (IFA) specific for double-stranded RNA (dsRNA) demonstrated the presence of
202 t to respond to the aberrant accumulation of double-stranded RNA (dsRNA) due to increased sensor leve
206 sed of nonenveloped viruses with a segmented double-stranded RNA (dsRNA) genome that replicate in dis
211 to-specific genes was performed by injecting double-stranded RNA (dsRNA) into female Aedes aegypti mo
212 ses, but amplification of viral proteins and double-stranded RNA (dsRNA) is inhibited in infected neu
215 a signature of dsRNA sensing, including the double-stranded RNA (dsRNA) receptor DExD/H-Box Helicase
216 n GUVs provide significant protection of the double-stranded RNA (dsRNA) replication intermediate aga
218 aberrant innate immune responses through the double-stranded RNA (dsRNA) sensor MDA5, unleashing endo
220 worms bacteria carrying a plasmid expressing double-stranded RNA (dsRNA) targeting a gene of interest
221 gment of the DvSSJ1 gene, the formation of a double-stranded RNA (dsRNA) transcript and siRNAs in tra
222 tudy, we identified a taxon of monosegmented double-stranded RNA (dsRNA) viruses in five planarian sp
223 Endogenous RNA transcription characterizes double-stranded RNA (dsRNA) viruses in the Reoviridae, a
224 Partitiviruses are segmented, multipartite double-stranded RNA (dsRNA) viruses that until recently
225 cription of mitochondrial RNAs that may form double-stranded RNA (dsRNA), as has been observed in mam
226 sensing and binding to viral RNA, including double-stranded RNA (dsRNA), RIG-I and MDA5 undergo cyto
228 erfect RNA duplexes and act as inhibitors of double-stranded RNA (dsRNA)-activated protein kinase (PK
230 granules (avSGs) by regulating activation of double-stranded RNA (dsRNA)-dependent protein kinase R (
234 ced by ADARs [adenosine deaminases acting on double-stranded RNA (dsRNA)] together with the endogenou
235 (EDIII) subunit antigen and two adjuvants, a double-stranded RNA (Poly (inosinic:cytidylic acid) (Pol
236 particles (DLPs), while genome replication (double-stranded RNA [dsRNA] synthesis) by VP1 occurs wit
237 IFN pathway, which comprises the sensing of double-stranded RNA and DNA (dsRNA/dsDNA) followed by IF
238 Functional relevance was demonstrated as double-stranded RNA and LL-37 promoted adhesion and tran
239 the capacity of UVB exposure to promote both double-stranded RNA and LL-37 was responsible for the en
240 ryptic transcripts being more prone to cause double-stranded RNA and viral mimicry, we observe low DN
241 C of RdRps from three RNA viruses, i.e. the double-stranded RNA bacteriophage Phi6, and the positive
242 tly increased when larvae were injected with double-stranded RNA bound to CNTs (PAMAM-CNT-dsRNA), com
243 tected in epidermal RNA, which suggests that double-stranded RNA derived from these retroelements may
245 Oligoadenylate synthetase 1 (OAS1) binds double-stranded RNA from invading viruses and produces 2
248 er RNA viruses.IMPORTANCE The rotavirus (RV) double-stranded RNA genome is replicated and packaged in
254 ed processing indicate that the synthesis of double-stranded RNA is defective in the absence of G3BP
255 inducible RNA species is reduced, leading to double-stranded RNA ligand sensing by PKR and MDA5; this
256 Endogenous release of type I IFNs with the double-stranded RNA mimetic poly(I:C) likewise produces
258 ce (RNAi) is a natural process through which double-stranded RNA molecules can silence the gene carry
259 al, attenuating the cytosolic L-A and Killer double-stranded RNA mycoviruses and protecting meiotic p
260 signaling pathways, either those that sense double-stranded RNA or cytoplasmic DNA that trigger IFN
261 l-like receptor 3 stimulation with poly(I.C) double-stranded RNA or infection with herpes simplex vir
262 ated siRNA loci were most often derived from double-stranded RNA precursors copied from spliced mRNAs
266 eplication complexes revealed that the viral double-stranded RNA replication template is coiled insid
267 As that form stable secondary structures and double-stranded RNA targets remains challenging as retro
268 alvi can stably recolonize bees and produce double-stranded RNA to activate RNAi and repress host ge
269 rus (reovirus) is a nonenveloped, segmented, double-stranded RNA virus in the Reoviridae family.
273 n of the ISR, by inhibiting the ISR-inducing double-stranded RNA-activated protein kinase or boosting
275 This construct, the DGCR8 core, contains two double-stranded RNA-binding domains (dsRBDs) and a C-ter
276 dividual, a homozygous variant in one of the double-stranded RNA-binding domains (dsRBDs) was identif
277 t RAN translation is highly regulated by the double-stranded RNA-dependent protein kinase (PKR).
278 lated by PRKRA (protein interferon-inducible double-stranded RNA-dependent protein kinase activator A
281 d siRNA-directed pUG RNA biogenesis underlie double-stranded-RNA-directed transgenerational epigeneti
286 t an effective antiviral response.IMPORTANCE Double-stranded RNAs produced during viral infections se
287 ent RNA polymerase (RdRP), which synthesizes double-stranded RNAs that are sensed by melanoma differe
290 were found defective in degrading exogenous double-stranded RNAs, which may explain retention of vir
292 teins bind to origins of replication at many double-stranded sites and also at AT-rich regions where
295 ces cholesterol synthesis, and inclisiran, a double-stranded small interfering ribonucleic acid that
296 Here we report a deracemization of a racemic double-stranded spiroborate helicate containing a bispor