ライフサイエンスコーパス: end-to-end

1 d hyphal filaments (elongated cells attached end-to-end).

2 osed of multiple copies of the genome joined end to end.

3 rate twofold and by allowing them to anneal end to end.

4 elongated structure with monomers connected end-to-end.

5 ing) that scientists enact in this analysis, end-to-end.

6 simulates a full response element by packing end-to-end.

7 single molecules or paired molecules linked end-to-end.

8 sible neck-to-neck pairs and less reversible end-to-end aggregates.

9 Assembling end-to-end along the actin filament is thereby not suffi

10 ator is the protein tropomyosin, which binds end-to-end along the length of the filament.

11 f functional divalent cations, which induces end-to-end alpha-helices in many conantokins.

12 10) with N(8)Q results in a Mg(2+)-complexed end-to-end alpha-helix, accompanied by attenuation of NM

13 le environment for both building and running end-to-end analysis workflows with automated report gene

14 We performed end-to-end anastomoses five times more rapidly than we p

15 Operations included simple and extended end-to-end anastomosis (n = 632), patch angioplasty (n =

16 ger age at time of repair (p < 0.001) and an end-to-end anastomosis technique (p < 0.001) were indepe

17 An end-to-end anastomosis was used in 30 patients.

18 esion with a right hemicolectomy and primary end-to-end anastomosis.

19 nts composed of individual bacteria attached end to end and that two TFP-associated proteins, PilT an

20 oral vessels, the sciatic nerve approximated end-to-end and osteosynthesis was performed using an int

21 an measurement of the extent of vessels from end to end, and (4) vessel caliber (VC), defined as the

22 ever, no single chromosome has been finished end to end, and hundreds of unresolved gaps persist(1,2)

23 vivo, intermediate filaments may lengthen by end-to-end annealing and that addition and loss of subun

24 uncharacterized secondary process involving end-to-end annealing and that rationalization of empiric

25 filaments and vimentin filaments lengthen by end-to-end annealing of assembled filaments.

26 d and green segments, which is indicative of end-to-end annealing of red and green filaments.

27 To overcome this challenge, we used end-to-end annealing to generate defects that are direct

28 ated by the opposing actions of severing and end-to-end annealing, and we speculate that this regulat

29 gthen by joining ends in a process known as "end-to-end annealing." To test if this also occurs for n

30 , suggesting a dynamic cycle of severing and end-to-end-annealing.

31 endly, web-based platform for collaborative, end-to-end annotation of eukaryotic genomes using UCSC A

32 ShotMAP is an analytically flexible, end-to-end annotation pipeline that can be implemented e

33 rget engagement, we synthesized an oriented, end-to-end anti-ICAM mAb-TM conjugate and found that thi

34 the deep adversarial learning, we present an end-to-end approach ClusterATAC to leverage high-dimensi

35 In this article, we introduce an end-to-end approach for deriving features invariant to c

36 t a whole image classifier trained using our end-to-end approach on the CBIS-DDSM digitized film mamm

37 ing, testing, and assessing performance, the end-to-end approach to machine learning can be a dauntin

38 Particles assemble end-to-end, as dictated by capillarity, and align along

39 external force revealed that rupture of the end-to-end assembly occurs by the shearing of the termin

40 ividual proteins but is elongated supporting end-to-end assembly.

41 sess whether Shs1-capped rods are capable of end to end association either with themselves or with Cd

42 binding free energy and the kinetic rates of end-to-end association and dissociation processes were e

43 rate that loop formation is a consequence of end-to-end association between protein fibrils.

44 nt experiments have demonstrated spontaneous end-to-end association of short duplex DNA fragments int

45 nstitutive filaments that polymerize through end-to-end association of the beta-helical domains.

46 the forces, free energy and kinetics of the end-to-end association process.

47 fusion PCR, to detect and analyze chromosome end-to-end associations (telomere fusions) within human

48 in which radial actomyosin fibers are joined end-to-end at spot AJs.

49 ation of the vaquita and fisheries, using an end-to-end Atlantis ecosystem model for the Northern Gul

50 elation between the stacking free energy and end-to-end attraction is discussed as well as possible r

51 ene system of 29c was found to have a gentle end-to-end bend as well as a significant longitudinal tw

52 The usefulness of the T-tube for end-to-end biliary anastomosis to reduce the incidence o

53 Molecular dynamics revealed that altered end-to-end bond formation has effects extending toward t

54 t the A277V mutation results in enhanced Tpm end-to-end bond strength and a reduced curvature of the

55 f TnT1 over three-dimensional grids covering end-to-end bonded tropomyosin alone or tropomyosin on F-

56 The end-to-end bonds formed between the N- and C-terminus of

57 contraction of myriads of sarcomeres joined end to end by the Z-bands.

58 ng Ca(2+) release, this was very uncommon in end-to-end cell pairs.

59 of adult animals despite triggering massive end-to-end chromosome fusions across the brain.

60 TRF2 depletion results in end-to-end chromosome fusions in all cell types that hav

61 rlier studies, depletion of Trf2 resulted in end-to-end chromosome fusions mediated by the C-NHEJ pat

62 End-to-end chromosome fusions that occur in the context

63 Most ALT strains displayed end-to-end chromosome fusions, suggesting that critical

64 ssion of ATM activation and the formation of end-to-end chromosome fusions.

65 homeostasis and protection from catastrophic end-to-end chromosome fusions.

66 instead of ferromagnetic layer realizes the "end to end" circulation of storage data, which remains a

67 e optical reporters employed experimentally, end-to-end collision dynamics exhibit little length depe

68 xperiment and simulation to characterize the end-to-end collision dynamics of unstructured, single-st

69 Finally, we have found that the end-to-end collision rate also depends linearly on solve

70 For longer constructs, however, the end-to-end collision rate exhibits a power-law relations

71 onger dependencies observed for the rates of end-to-end collisions in single-stranded DNA and through

72 e aorta-aorta and porto-cava anastomoses and end-to-end colorectal anastomosis.

73 strand annealing (SSA) reaction to generate end-to-end concatemers of the phage genome for packaging

74 tion of filaments of bacteria lined up in an end-to-end conformation.

75 to form filaments due to a complete lack of end-to-end connections essential for gliding motility.

76 Our end-to-end contact formation measurements reveal that in

77 ls aligning with each other and signaling by end-to-end contact to coordinate the process of differen

78 ed (haplotype-resolved) genome sequence with end-to-end contiguity for each chromosome at reasonable

79 The proposed end-to-end convolutional neural network (CNN) based mode

80 Furthermore, we find that this end-to-end cooperativity is determined by the UTR sequen

81 They possess an unusual end-to-end cyclic backbone combined with a cystine knot

82 cular ligation or intramolecular ligation in end-to-end cyclization.

83 Their end-to-end cyclized backbone that enhances molecular sta

84 oRata is an open-source software package for end-to-end data analysis in a wide variety of community

85 OpenCyto supports end-to-end data analysis that is robust and reproducible

86 These findings demonstrate that an end-to-end deep learning approach can classify a broad r

87 However, a comprehensive evaluation of an end-to-end deep learning approach for ECG analysis acros

88 Here we present an End-to-End deep learning framework, circDeep, to classif

89 A new end-to-end deep learning framework, named DeepPPISP, thr

90 We present a novel end-to-end deep learning model based on multilane capsul

91 ntly fed through a softmax layer to train an end-to-end deep learning model.

92 For this purpose, we present deepRAM, an end-to-end deep learning tool that provides an implement

93 lopment of clinically applicable explainable end-to-end deep-learning systems for the prediction of C

94 PCP BB backbone appears to occur through an end-to-end depolymerization mechanism as evidenced by si

95 elf-immolative polymers, which degrade by an end-to-end depolymerization mechanism in response to the

96 The proposed algorithm was trained end-to-end directly using 5,325 ocular surface images fr

97 loride, indicating a decrease in the average end-to-end distance (collapse) at low denaturant concent

98 tract both the radius of gyration (R(g)) and end-to-end distance (R(ee)) from SAXS profiles, we teste

99 orylation at threonine or serine extends the end-to-end distance and increases the effective persiste

100 riments probing backbone structure by IR and end-to-end distance by FRET.

101 find that the contour-length scaling of mean end-to-end distance deviates from predictions of a purel

102 nce of an NCp7-induced increase in the 3'-5' end-to-end distance distribution and a partially melted

103 rods by fitting an empirical function on the end-to-end distance distribution curve obtained by MD si

104 he protein on nucleic acid base pairing, the end-to-end distance distribution for the nucleic acid an

105 data analysis method to directly measure the end-to-end distance distribution of a phosphorylatable p

106 By monitoring the end-to-end distance distribution of these segments as a

107 nformational distributions, specifically the end-to-end distance distributions, P(R(ee)), accessed th

108 nmonotonic dependence on the variance of the end-to-end distance distributions.

109 s rationalized by calculation of the polymer end-to-end distance dynamics from a Rouse model that inc

110 y stretching, can be an equal contributor to end-to-end distance fluctuations for 35-bp DNA and contr

111 Sic1, such as overall compactness and large end-to-end distance fluctuations, which are consistent w

112 Recent measurements of the distribution of end-to-end distance in short DNA molecules infer coopera

113 t the diffusion coefficient of the protein's end-to-end distance is on the order of 10(8) nm(2)/s, is

114 obal persistence length changes derived from end-to-end distance measurements, and with results of DN

115 accurate data for the persistence length and end-to-end distance of 107 DNA tethers in a single exper

116 P model, for example, we predict an expected end-to-end distance of about 14 unpaired bases.

117 en at a low dihedral angle by shortening the end-to-end distance of adjacent pai planes.

118 However, the end-to-end distance of CGRP is larger than that of IAPP.

119 After the end-to-end distance of each unfolding geometry was measu

120 In this paper, we present the end-to-end distance of randomly self-paired polymers (RS

121 We hypothesize that for a given end-to-end distance of the nucleosomal DNA, the nucleoso

122 econdary structure of CGRP, we find that the end-to-end distance of the peptide increases with decrea

123 We have also found that the expected end-to-end distance of the RSPP scales roughly as the 1/

124 We discovered that as the end-to-end distance of the target dsDNA molecule is incr

125 ium free energy profiles as functions of the end-to-end distance of the two proteins show that, at va

126 In addition, the scaling of the end-to-end distance R N as a function of the chain lengt

127 of photoswitch undergoes an ~10 A change in end-to-end distance upon isomerization and can be used t

128 e number of basepairs and the scaling of the end-to-end distance with the curvilinear distance, the b

129 oes a significant condensation (reduction of end-to-end distance) upon binding to nucleosomes, consis

130 properties of mean-square spatial distance, end-to-end distance, contact probability and their chrom

131 istances comparable to the mean free polymer end-to-end distance.

132 measured by the relative fluctuations in the end-to-end distance; rather, it provides a 16 A extensio

133 DNA end-to-end distances and local DNA bend angle distributi

134 such that the edge lengths are given by the end-to-end distances between nodes.

135 o nonlinear geometries, and the experimental end-to-end distances for these complexes match those fro

136 foldamers with >10 Aib residues, which have end-to-end distances greater than the hydrophobic width

137 ymer models for PEVK, we determined the mean end-to-end distances of an 11- and a 21-residue syntheti

138 ss of the membrane increases with increasing end-to-end distances of spectrins, but has a nonmonotoni

139 was obtained as the ratio of the equilibrium end-to-end distances, and the viscosity scaling factor w

140 rentially populates conformations with short end-to-end distances.

141 to the application of Gaussian polymer chain end-to-end distribution to extract Rg from the FRET effi

142 We have developed an automated end-to-end DNA data storage device to explore the challe

143 nnect the cytoplasm of adjacent cells by the end-to-end docking of two Cx hemichannels.

144 We used an end-to-end ecosystem model (Atlantis), forced by downsca

145 We demonstrate how CausalMGM enables an end-to-end exploratory analysis of biomedical datasets,

146 Single-molecule studies probing the end-to-end extension of long DNAs have established that

147 In this study we report measurements of the end-to-end extension of poly(U) RNA under 0.1 to 10 pN a

148 low forces while maintaining a predetermined end-to-end extension of the DNA.

149 res additional coordinates orthogonal to the end-to-end extension to be uniquely identified.

150 our earlier release including improvement in end-to-end extraction performance and speed, availabilit

151 dicate that the two proteins associate in an end-to-end fashion in solution.

152 l network for analyzing cytometry data in an end-to-end fashion, allowing a direct association betwee

153 s clustering to be integrated as a module in end-to-end feature learning pipelines.

154 4.5, the fibrils elongate very slowly via an end-to-end fibril-fibril aggregation mechanism, without

155 We found the end-to-end force to be short range, attractive, hydropho

156 distinct unfolding pathways when subject to end-to-end force, one of which is consistent with a prop

157 It is designed to connect miRNA molecules end to end, forming a DNA-RNA duplex through a complemen

158 We programmatically created an end-to-end framework that systematically evaluates warfa

159 We propose an end-to-end framework, MeSHProbeNet (formerly named as xg

160 We present an end-to-end framework, PIPR (Protein-Protein Interaction

161 of skin lesions using a single CNN, trained end-to-end from images directly, using only pixels and d

162 cessary hardware and software interfaces for end-to-end functionality.

163 of eukaryotic chromosomes from degradation, end-to-end fusion events, and from engaging the DNA dama

164 The biosensor is composed of an end-to-end fusion of cyan fluorescent protein (CFP), chi

165 The end-to-end fusion of DNA methyltransferases to zinc fing

166 CuIn(1-x)Ga(x)S2 (CIGS) nanocrystals, causes end-to-end fusion of nanorod pairs into nanodumbbells at

167 ially resulting in chromosome recombination, end-to-end fusion, and recognition as damaged DNA.

168 leoprotein complexes that prevent chromosome end-to-end fusions and control cell ageing.

169 cides with telomere deprotection, chromosome end-to-end fusions and inviability(3-9).

170 es, and ligase 4 (LIG4)-dependent chromosome end-to-end fusions are markedly reduced.

171 telomere dysfunction-induced foci (TIFs) and end-to-end fusions in ALT-positive cells.

172 To test this hypothesis, we examined end-to-end fusions isolated from Caenorhabditis elegans

173 ed process may create duplications that seal end-to-end fusions, in the absence of breakage-fusion-br

174 Depletion of TRF2 causes chromosome end-to-end fusions, initiating genomic instability that

175 mote the formation of deleterious chromosome end-to-end fusions.

176 which altered TRF2 protein levels can induce end-to-end fusions.

177 mulation of H3K9me3 at damaged telomeres and end-to-end fusions.

178 R5, and is sufficient to suppress chromosome end-to-end fusions.

179 horter than average and religate to generate end-to-end fusions.

180 arbored extended G-overhangs, and engaged in end-to-end fusions.

181 HOAP, which protects chromosomes from lethal end-to-end fusions.

182 s of directional amplification, in which the end-to-end gain grows exponentially with the number of c

183 Here we use long-read sequencing to generate end-to-end genome assemblies for 12 strains representing

184 Cytokit offers (i) an end-to-end, GPU-accelerated image processing pipeline; (

185 Recently, a new antimesenteric, functional, end-to-end, hand-sewn ileocolic anastomosis (Kono-S) has

186 E2 forms end-to-end homodimers with a conserved C-terminal motif

187 th are able to self-assemble side by side or end to end in nonsolvents for the central or terminal se

188 We sequence these motors end-to-end in a closed chain forming a two-dimensional l

189 The C-terminal cystine knot domain dimerizes end-to-end in a manner predicted by homology to TGF-beta

190 Furthermore, sisters separate end-to-end in sequential discontinuous pulses, each elon

191 res have long been considered to be arranged end-to-end in series along the length of the muscle into

192 come from using deep neural networks trained end-to-end in tasks such as object recognition, video ga

193 e evidence that two inhibitor molecules bind end-to-end in the long substrate binding channel.

194 ngated molecule, with the two SLPs arranged 'end-to-end' interacting with each other through a small

195 s discussed as well as possible roles of the end-to-end interaction in biological and nanotechnologic

196 lay between shape anisotropy-induced and DNA end-to-end interaction-induced N ordering for 11, 24, an

197 ssembly of nanoparticles on 2D platforms via end-to-end interactions and in designing optimally packe

198 st to the behavior of 24 and 48 bp sDNA, the end-to-end interactions between 11 bp sDNA rods with 2-T

199 ecular dynamic simulations, we characterized end-to-end interactions of duplex DNA, quantitatively de

200 self-assembled structures on mica: designed end-to-end interactions produced micrometre-long single-

201 d oligo-thymine (T) overhangs modulating the end-to-end interactions.

202 An end-to-end interpretable model that takes full radiograp

203 on and subsequent wrongful recombination and end-to-end joining during cell division.

204 l proteins that polymerize into filaments by end-to-end joining of hetero-oligomeric complexes.

205 cal apo-peptide with a flexible center to an end-to-end K2hPg-bound alpha-helix.

206 bioinformatics literature, the potential of end-to-end learning for single amino acids, as compared

207 Our study shows that end-to-end learning is a flexible and powerful method fo

208 nt deep learning architectures, we show that end-to-end learning is on par with classical encodings f

209 prediction tasks, we develop a new nonlinear end-to-end learning model, called NeoDTI, that integrate

210 ices, namely one-hot, VHSE8 and BLOSUM62, to end-to-end learning of amino acid embeddings for two dif

211 ze the target prediction - a process called 'end-to-end learning' - has led to state-of-the-art resul

212 was calculated from measurements of filament end-to-end length and contour length.

213 athways along a well defined coordinate, the end-to-end length of the protein.

214 o a broad distribution of rupture forces and end-to-end lengths in the force-extension mode and multi

215 ever, the persistence length surrounding the end-to-end linkage is almost twofold higher for smooth c

216 a biodegradable triblock polymer composed of end-to-end linkages between poly(lactic-coglycolic acid)

217 n filaments reveal the azimuthal position of end-to-end linked tropomyosin molecules on the surface o

218 contraction is regulated by the movement of end-to-end-linked troponin-tropomyosin complexes over th

219 jugated macrocycles that are formed from the end-to-end linking of stilbenes.

220 C to SL-D' and SLC' to SL-D) and stack in an end-to-end manner (SL-C to SL-D and SL-C' to SL-D') that

221 on DNA sequences to predict enhancers in an end-to-end manner by using a deep convolutional neural n

222 nested events and their modifications in an end-to-end manner without any syntactic tools.

223 MetaLAFFA is a new end-to-end metagenomic functional annotation pipeline wi

224 butions of this study are as follows: (1) an end-to-end model based on CapsNet is proposed to identif

225 We then proposed an end-to-end multi-task model with deep denoising auto-enc

226 We demonstrate an end-to-end network that performs joint classification an

227 We propose an end-to-end neural nested event extraction model named De

228 The sural nerve was grafted to the BB with end-to-end neurorrhaphy under surgical microscopy in cad

229 two polyhelicene frameworks consisting, from end-to-end, of 18 and 24 fused benzene rings.

230 convolutional neural network models trained end-to-end on large populations of neurons.

231 This new approach enables the end-to-end one-dimensional liquid chromatography-tandem

232 xes which are needed to keep the cells in an end-to-end orientation, leading to separation of daughte

233 f 1D nanocrystal alignment (side-by-side and end-to-end), orientation (horizontal and vertical) and o

234 Finally, we observed regular end-to-end oscillation over very short distances along t

235 sis that coupling of TNT1 with tropomyosin's end-to-end overlap region helps anchor tropomyosin to an

236 An end-to-end PAT monitoring and control strategy was devel

237 lts as web reports in just a few hours->600% end-to-end performance improvement over state of the art

238 troduction accessions was evaluated using an end-to-end phenotyping workflow.

239 We introduce Carnelian, an end-to-end pipeline for metabolic functional profiling u

240 This end-to-end pipeline is the first protocol for ChIP-seq i

241 We introduce alevin, a fast end-to-end pipeline to process droplet-based single-cell

242 ator-independent fully automatic open-source end-to-end pipeline.

243 We present and extensively evaluate an end-to-end, pixel-to-pixel fully convolutional regressio

244 rigami concept, we have developed a scalable end-to-end planning and fabrication process.

245 of viral expression and readout (CARVER), an end-to-end platform that uses Cas13 to detect and destro

246 The tropomyosin family of proteins form end-to-end polymers along the actin filament.

247 l structures of NDEL1, as well as chain-like end-to-end polymers.

248 s more a mixture of varying-length chains of end-to-end polymers.

249 mically to achieve optimal configuration and end-to-end positioning and ligation.

250 The end-to-end process has a residence time of 4.7 min with

251 ative examples of automated flow systems and end-to-end prototypes realized to expedite medicinal che

252 To study the end-to-end QA approach, we built the MedQuAD collection

253 nced by Ikaros family members, including the end-to-end regulation of cytokine signaling.

254 y from high-dimensional sensory inputs using end-to-end reinforcement learning.

255 ructure), Forster resonance energy transfer (end-to-end rigidity), molecular dynamics simulation (str

256 The developed F-CNN architecture enabled an end-to-end semantic inspection of the PV module backshee

257 Remarkably, it showed exceptional end-to-end sequence identity to the gene cluster respons

258 Technical advances have now made an end-to-end single-use manufacturing facility possible, b

259 Here we present a service-oriented, end-to-end software framework, CDAPS (Community Detectio

260 t creates a foundation for development of an end-to-end solution for MPS-based experiments or clinica

261 a comprehensive pipeline, which provides an end-to-end solution for novel peptide detection with the

262 lobSTR's implementation is an end-to-end solution.

263 ializing technologies as part of integrated, end-to-end solutions that accelerate neuroscientific dis

264 RM is an open-source ImageJ/FIJI plug-in for end-to-end spectroscopic analysis and visualization for

265 for alignment stages, and up to a 4.56-fold end-to-end speedup over multithreaded NCBI BLAST.

266 for alignment stages, and up to a 1.75-fold end-to-end speedup over single-threaded NCBI BLAST.

267 a et al. reported on the discovery of strong end-to-end stacking interactions between short DNAs (sDN

268 ions, indicating the onset of some degree of end-to-end stacking interactions.

269 much faster way of unfolding a protein than end-to-end stretching, especially in a low-force regime,

270 Here we report the first end-to-end study of time-lapse V S imaging that uses tra

271 wo CRD palmitoleoyl-binding grooves oriented end to end, suggesting that the Wnt palmitoleoyl group s

272 LF/DNA ligase IV NHEJ ligation complex, that end-to-end synapsis involves a dynamic positioning of th

273 Continuous end-to-end synthesis in the refrigerator-sized [1.0 mete

274 y areas of medicine and explore how to build end-to-end systems.

275 neuploid with double-stranded DNA breaks and end-to-end telomere fusions and most were tetraploid or

276 added to the input mutant RNA3 3' UTR due to end-to-end template switching by BMV replicase during (-

277 ate spatial derivatives, which are optimized end to end to best satisfy the equations on a low-resolu

278 conditions, the Cdc11-capped rods polymerize end to end to form long paired filaments, whereas Shs1-c

279 The nanotubes can then join end to end to form stable connections, with unconnected

280 -helical coiled-coil protein that associates end-to-end to form a continuous strand along actin filam

281 dc10-Cdc10-Cdc3-Cdc12-Cdc11) that associates end-to-end to form filaments.

282 ical variational graph auto-encoders trained end-to-end to jointly embed gene-gene, gene-disease and

283 ble to assist with this task, few integrated end-to-end tools exist.

284 End-to-end trained deep learning networks consistently o

285 OrgaQuant is an end-to-end trained neural network that requires no param

286 Our end-to-end trained, deep-learning-based model predicted

287 ate-of-the-art deep learning models that use end-to-end training to automatically extract informative

288 It is widely believed that end-to-end training with the backpropagation algorithm i

289 beled data in addition to labeled data in an end-to-end training.

290 ast cancer on screening mammograms using an "end-to-end" training approach that efficiently leverages

291 peropyrene adopts a twisted backbone with an end-to-end twist angle of 28 degrees that was unambiguou

292 it to be a D(2) -symmetric molecule with an end-to-end twist of 97 degrees .

293 n studied extensively, we do not yet have an end-to-end understanding of chemotaxis.

294 RI can enhance the responsiveness to dynamic end-to-end user demands and globally optimize radio freq

295 hort DNA duplexes to spontaneously aggregate end-to-end when axially aligned in a small volume of mon

296 nce of standard feedforward networks trained end-to-end with a backpropagation algorithm on simple ta

297 ires and coupling of fully formed nanowires "end-to-end", with negligible termination and initiation.

298 In the present paper, we introduce an end-to-end workflow called joint and unique multiblock a

299 om others or optimize their strategies in an end-to-end workflow.

300 End-to-end workflows for processing GCxGC data are chall