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1  of cells, tissues, and organisms across the evolutionary tree.
2 tions by a tumor can be modeled by a type of evolutionary tree.
3 xture processes describing branches along an evolutionary tree.
4 he appropriate positioning of ostrich in the evolutionary tree.
5  methylation, is highly conserved across the evolutionary tree.
6 require correct placement of the root of the evolutionary tree.
7 d mutations are found in the branches of the evolutionary tree.
8 g relatively few branches of the prokaryotic evolutionary tree.
9 oridia are located at the base of the fungal evolutionary tree.
10 osition to vary in different branches of the evolutionary tree.
11  is highly conserved on some branches of the evolutionary tree.
12 inconsistent with the hypothesis of a single evolutionary tree.
13 y of any amino acid at any given node in the evolutionary tree.
14 ficult for species that are far apart on the evolutionary tree.
15  millions of genes from organisms across the evolutionary tree.
16 bels unlock opportunities in the analysis of evolutionary trees.
17 inheritance patterns characteristic of tumor evolutionary trees.
18 t cause of the observed similarities between evolutionary trees.
19 o allow the construction of all-encompassing evolutionary trees.
20 n hypothetical lineages implied by estimated evolutionary trees.
21 tick based on absolute dates of the nodes in evolutionary trees.
22  create a correlation between the respective evolutionary trees.
23  alternative to current two-dimensional (2D) evolutionary trees.
24                             Starting with an evolutionary tree, 20-50 protein query sequences for a g
25 mixed membership models produced from common evolutionary trees allows us to quickly and accurately r
26                                     Finally, evolutionary tree analyses revealed significant clusteri
27                                              Evolutionary tree analysis suggested the domesticus mtDN
28 anges in body size deeper in the macronarian evolutionary tree and acted as an exaptation to gigantis
29 bacterial genomes throughout the prokaryotic evolutionary tree and are required for accurate chromoso
30 uences cluster as a monophyletic group on an evolutionary tree and differ from those of Bos/ Bison by
31  and Artibeus jamaicensis - spanning the bat evolutionary tree and including the longest-lived genera
32       It is situated in a deep branch in the evolutionary tree and is particularly noteworthy in havi
33 ld a key position at the base of the primate evolutionary tree and will be highly informative for the
34  trait modeling that combines total-evidence evolutionary trees and a comprehensive size dataset, we
35   We present MEDICC2, a method for inferring evolutionary trees and WGD using haplotype-specific soma
36 -Tu) found at ancient nodes in the bacterial evolutionary tree, and measure their activities as a fun
37 t to which different subsets of taxa span an evolutionary tree, and provides a quantitative tool for
38  at very divergent points in the human mtDNA evolutionary tree, and the 1555G mutations occur in many
39 that gene products clustered together in the evolutionary tree are encoded by genes with similarities
40          First, the sequences used to create evolutionary trees are carefully selected to provide cov
41                                  Bifurcating evolutionary trees are commonly used to describe genetic
42 tion (ME) methods of phylogenetic inference, evolutionary trees are constructed by searching for the
43                                              Evolutionary trees are often estimated from DNA or RNA s
44  the best superposition of the corresponding evolutionary trees based on tree automorphism group.
45                                              Evolutionary trees built from shared plasmid maintenance
46 riation affects circadian rhythms across the evolutionary tree, but the underlying molecular mechanis
47  loci in the nine human populations leads to evolutionary trees consistent with the known ethnohistor
48                This idea is the basis for an evolutionary tree constructed using the notion that resp
49 nd correlations with serotype assignments of evolutionary trees constructed for different regions of
50  amino-acid sequences, which is critical for evolutionary-tree construction.
51                          Disparities between evolutionary trees deduced from receptor sequences vs. f
52                    In addition, KSD features evolutionary trees derived for each family and detailed
53 ization image browser; phyloGif, for drawing evolutionary tree diagrams; a redesigned Custom Track fe
54 icates that their data requirement for large evolutionary trees essentially matches the conjectured p
55      The theory of our approach, called the "evolutionary tree" (ET)-TDT, is developed for two cases:
56 eting >2000 gene regions to generate a dated evolutionary tree for 475 fungi and combined it with a s
57            We used this measure to create an evolutionary tree for multiple cancers.
58 ny approaches previously used to reconstruct evolutionary trees from gene content of extant species c
59 wards introduced novel methods for computing evolutionary trees from genetical data, initially for hu
60 different habitats and compare these data to evolutionary trees generated using theoretical models of
61         Sequence manipulation tools, such as evolutionary tree generation, novel sequence assignment,
62  Recent branching (100 MYA) of the mammalian evolutionary tree has enhanced brain complexity and func
63  Phylogeny estimation (the reconstruction of evolutionary trees) has recently been applied to CRISPR-
64                                 Phylogenies (evolutionary trees) have provided key insights into the
65 events when assessing the similarity between evolutionary trees improves the performance of the metho
66 eding isolates were nearest neighbors on the evolutionary tree in all cases.
67 zation of different tracts along the primate evolutionary tree, including distinctive connectivity of
68    We develop a computational paradigm using evolutionary tree inference (tumor phylogeny) algorithms
69 ion on the so-called "trunk lineages" of the evolutionary tree is most pervasive.
70                                           An evolutionary tree is reconstructed during the calculatio
71 hat the three-domains tree may be incorrect: evolutionary trees made using newer methods place eukary
72  G or G (2) statistic) statistic between the evolutionary tree model and the multinomial model with t
73 ntify mixtures corresponding to parsimonious evolutionary tree models.
74                                          The evolutionary tree obtained for these proteins shows that
75                                          The evolutionary tree of 2-, 1-, and 0-ferric transferrins i
76 ith a size of 1.15 Gb, and built a clarified evolutionary tree of 486 accessions.
77 e simulator, SimSCSnTree, which generates an evolutionary tree of cells and evolves single nucleotide
78 ombines parsimony and likelihood to build an evolutionary tree of disease haplotypes, with each node
79                                          The evolutionary tree of lice indicated that three of the ma
80                        Inferring an accurate evolutionary tree of life requires high-quality alignmen
81 us variation in species diversity across the evolutionary tree of life than is generally assumed.
82                           To place it in the evolutionary tree of life, as has been done for the othe
83 responses in the three major branches of the evolutionary tree of life.
84 m the first year of the pandemic produced an evolutionary tree of major SARS-CoV-2 haplotypes.
85                                          The evolutionary tree of plant serine/threonine protein kina
86 on regarding the orangutan's position on the evolutionary tree of Pongidae and Hominidae.
87 nson et al., I report for the first time the evolutionary tree of the ENase-like protein superfamily
88          We present a complete, time-scaled, evolutionary tree of the world's bird species.
89                                  We build an evolutionary tree of these subfamilies and conclude that
90                                       We use evolutionary trees of haplotypes to study phenotypic ass
91       In conclusion, the correlation between evolutionary trees of interacting domains cannot exclusi
92  of binding sites to the correlation between evolutionary trees of interacting domains.
93 rove the accuracy of sequence alignments and evolutionary trees of membrane proteins.
94 at are based on the co-evolution hypothesis "evolutionary trees of protein families (that are known t
95                                          The evolutionary trees of the 1a and 3a ORFs were more compa
96  genomes and can use the data to estimate an evolutionary tree or network.
97                             Further down the evolutionary tree, other organisms show a similar but sm
98 aphy) is compared with the order inherent in evolutionary trees (phylogeny), provide a more convincin
99 ampus, and subsequently across the mammalian evolutionary tree, place cells have now been discovered
100     Together, these results re-draw the P2XR evolutionary tree, provide new insights into the origin
101 goal has motivated several attempts to apply evolutionary tree reconstruction methods to assays of tu
102 e there have been many studies on the cancer evolutionary tree reconstruction, not many have been pro
103  distances are additive and are suitable for evolutionary tree reconstruction.
104      We also successfully applied FRACTAL to evolutionary tree reconstructions and to an experiment u
105  many successes but important aspects of the evolutionary tree remained disputed.
106 M), assigns mutations to the branches of the evolutionary tree stochastically, and then test statisti
107                   Mapping these data onto an evolutionary tree suggests that this gene became extensi
108 anced and accurate delineation between tumor evolutionary trees than existing distance measures.
109 ionships at critical areas in the vertebrate evolutionary tree that have, so far, been phylogenetical
110 set monkeys are on a different branch of the evolutionary tree that led to humans, our data demonstra
111 relations must be done in the context of the evolutionary tree that relates species.
112 l DNA sequencing enables the construction of evolutionary trees that can reveal how tumors gain mutat
113        We compute the likelihood of specific evolutionary trees, thereby informing the phylogenetic r
114                             Also, details on evolutionary tree topology are missing as they use simil
115 st in using algorithmic methods to infer the evolutionary tree underlying the developmental history o
116 ew study rearranges the base of the dinosaur evolutionary tree, upending 130 years of consensus.
117      A new method is presented for inferring evolutionary trees using nucleotide sequence data.
118 duce PhyloDet (short for PhyloDetective), an evolutionary tree visualization tool that enables biolog
119 sms represented by the root of the universal evolutionary tree were most likely complex cells with a
120                                              Evolutionary trees were estimated from the nonrecombinan
121                These isolates cluster in the evolutionary tree with strains responsible for clinical
122 ished five-branch structure of the RNA virus evolutionary tree, with no additional phyla.

 
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