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1 ally removed with uracil DNA glycosylase and exonuclease III.
2 from different species and a comparison with exonuclease III.
3 ately 100-fold less efficient than repair by exonuclease III.
4 edly, they alter the cleavage specificity of exonuclease III.
5 scherichia coli DNA polymerase I, and E.coli exonuclease III.
6 phodiesters were protected from digestion by exonuclease III.
7 '-5' linkage itself was poorly hydrolyzed by exonuclease III.
8 ded double strand, which is then digested by exonuclease III.
9  to the location of the extra alpha-helix in exonuclease III.
10 the metal ion dependence of Escherichia coli exonuclease III, 3'-5'-exonuclease and exoribonuclease H
11 y enhanced the dCTPalphaB resistance towards exonuclease III (5-Et-dCTPalphaB >5-Me-dCTPalphaB >dCTPa
12        DNase I is structurally homologous to exonuclease III, a DNA-repair enzyme with multiple activ
13  III-inactive protruding 3' terminus into an exonuclease III-active blunt end, triggering the digesti
14 9 degrees C/s ramp rate to support efficient Exonuclease III activity during signal amplification.
15  sensitive, and reproducible method based on Exonuclease III-aided target recycling technique applied
16  acids, comprising the 10 amino acids of the exonuclease III alpha-helix flanked by a glycine rich re
17                         Therefore, the novel Exonuclease III-amplified flow cytometry bead assay has
18 lethality caused by a combined deficiency of exonuclease III and dUTPase, which has been attributed t
19                                              Exonuclease III and endonuclease IV are the major enzyme
20 tant cells lack activity at the positions of exonuclease III and endonuclease IV but retain activity
21         C2-AP is incised less efficiently by exonuclease III and endonuclease IV than are other abasi
22           Incision of L and C4-AP lesions by exonuclease III and endonuclease IV was determined under
23  two Escherichia coli 3'-phosphodiesterases, exonuclease III and endonuclease IV, are readily detecte
24  cleavage when two Escherichia coli enzymes, exonuclease III and endonuclease IV, are used.
25 , uracil DNA glycosylase-deficient, ung-, or exonuclease III and endonuclease IV-deficient, xth-nfo-)
26 bed using Escherichia coli AP endonucleases, exonuclease III and endonuclease IV.
27 escribe a generalizable method that utilizes exonuclease III and exonuclease I to interrogate the bin
28  repair proteins, including Escherichia coli exonuclease III and human APE, that repair oxidative and
29 bstrates by micrococcal nuclease mapping and exonuclease III and hydroxyl radical footprinting reveal
30 ization of the structure of AQ-157TG NCPs by Exonuclease III and hydroxyl radical footprinting, we co
31 igestion differs significantly between WRNp, exonuclease III and Klenow, indicating that each exonucl
32 ects of these linkages on the dsDNA specific exonuclease III and on the ssDNA specific mung bean nucl
33 ootprint of RNAP II arrested at a CPD, using exonuclease III and T4 DNA polymerase's 3'-->5' exonucle
34 ncipal replicative helicases or proofreading exonucleases; (iii) apparently orthologous but poorly co
35 rocessing enzymes such as endonuclease IV or exonuclease III are not absolutely required for repair o
36 ins (deficient in the major AP endonuclease, exonuclease III) are sensitive.
37 nzymes, such as Escherichia coli RNase H and exonuclease III, are known to use metal cofactors in the
38            Here we use T7 RNA polymerase and exonuclease III as probes to obtain a more relevant lowe
39 lution, with sensing signals amplified by an exonuclease III-based target recycling strategy.
40 ical changes, in situ DNA end labeling, post-exonuclease III BrdUrd labeling, and DNA fragmentation.
41 eavage at abasic sites in DNA, a property of exonuclease III but not native DNase I.
42  Introduction of target sequence induces the exonuclease III catalyzed probe digestion and generation
43         The results presented here show that exonuclease III degrades single-stranded DNA as a substr
44 increases protection of nucleosomal DNA from exonuclease III digestion by approximately 10 bp.
45 s demonstrated using a strategy that employs exonuclease III digestion of a target sequence.
46                                        Minor exonuclease III digestion products in this substrate ind
47 ong with removal of unligated genomic DNA by exonuclease III digestion.
48 ng sequence of the 24K gene was localized by exonuclease III digestion.
49 uctures by hydroxyl radical footprinting and exonuclease III digestion.
50 tails extending from the ends as assessed by exonuclease III digestion.
51 h DNase I and 1,10-phenanthroline-copper and exonuclease III digestions showed that ecteinascidin 743
52 ns as revealed by footprinting studies using exonuclease III, DNase I, and hydroxyl radical.
53                                              Exonuclease III, encoded by the xthA gene, plays a centr
54                     In this work, we exploit exonuclease III (Exo III) activity on DNA hybrids contai
55 leic acid self-assembly circuitry and enzyme exonuclease III (Exo III) for the differentiation of sin
56                                   The enzyme Exonuclease III (Exo III) is a useful tool in this regar
57 ified optical aptasensor system based on the Exonuclease III (Exo III) recycling of the VEGF analyte
58                             Escherichia coli exonuclease III (Exo III) removes apyrimidinic or apurin
59  AP endonucleases endonuclease IV (Endo IV), exonuclease III (Exo III), and Ape1 on the reaction kine
60  of homology to its prokaryotic counterpart, exonuclease III (Exo III), except for the amino terminus
61 ive detection of streptomycin (STR) based on Exonuclease III (Exo III), SYBR Gold and aptamer complim
62  multifunctional dumbbell probe can initiate exonuclease III (Exo III)-aided target recycling amplifi
63                  Herein, we report a type of exonuclease III (Exo III)-powered stochastic DNA walker
64 -amino-acid domain of SNIP is related to the exonuclease III (ExoIII) domain of the 3'-->5' proofread
65                                  We obtained exonuclease III (exoIII) footprints for a series of RNA
66 und that a combined treatment with MNase and exonuclease III (exoIII) overcomes MNase sequence prefer
67 ' end-resection reaction of Escherichia coli exonuclease III (ExoIII), a DNA repair enzyme.
68  which shares homology with Escherichia coli exonuclease III (ExoIII), is the major abasic endonuclea
69 , digests 5'-3', as well as Escherichia coli exonuclease III (ExoIII), which digests 3'-5', could sub
70 We have developed a novel DNA assay based on exonuclease III (ExoIII)-induced target recycling and th
71 e DNase I and its Escherichia coli homologue exonuclease III (EXOIII).
72 roteins form a distinct subfamily within the exonuclease III (ExoIII)/Ape1/Apn2 family of proteins.
73                       CCR4, unlike all other exonuclease III family members, contains a leucine-rich
74  in vitro suggests that this property of the exonuclease III family of AP endonucleases is remarkably
75 homology to the major human/Escherichia coli exonuclease III family of AP endonucleases.
76 with a 347-residue segment homologous to the exonuclease III family of AP endonucleases.
77 trations, and is a specific inhibitor of the exonuclease III family of enzymes to which APE1 belongs.
78           CCR4, a poly(A) deadenylase of the exonuclease III family, is a component of the multiprote
79 s with a general view in the literature that exonuclease III favors double-stranded nucleic acid as a
80                              The size of the exonuclease III footprint of ligase bound a single nick
81 e have examined the DNA binding affinity and exonuclease III footprint of the EcoKI type IA restricti
82                      Finally, as assessed by exonuclease III footprinting and transcription profiles,
83                                              Exonuclease III footprinting of the (S3/HsdM)(2) -DNA co
84                                      In vivo exonuclease III footprinting showed that treatment with
85           DNase I, micrococcal nuclease, and exonuclease III footprinting suggests that UBF and histo
86 n resistance, lifetime, DNAseI footprinting, exonuclease III footprinting, permanganate footprinting
87                                              Exonuclease III footprints of the arrested complexes are
88  at low pH may be similar to the activity of exonuclease III from E. coli.
89                                  In an xthA (exonuclease III gene) mutant where there are 3-fold more
90              Catalytic activation of E. coli exonuclease III has been examined for a series of inert
91 res extensive homology with Escherichia coli exonuclease III, has nuclease activity, and provides res
92                  Experimental conditions for exonuclease III have been optimized for this application
93 nd phosphatase activities of Esherichia coli exonuclease III have been quantitatively measured, offer
94 referential exodeoxyribonuclease activity of exonuclease III in combination with the difference in di
95 cribes a novel approach utilizing the enzyme exonuclease III in conjunction with 3'-terminated DNA mi
96  could also be obtained with purified E.coli exonuclease III in vitro, but a quantitative comparison
97 the presence of an additional alpha-helix in exonuclease III, in a position suggestive of interaction
98 n with the target DNA transforms the probe's exonuclease III-inactive protruding 3' terminus into an
99 ease-amplified DNA detection scheme in which exonuclease III is used to "recycle" target molecules, t
100 icking endonucleases or sequence independent exonuclease III, lambda exonuclease, RNase H, RNase HII,
101 mplate using a combination of digestion with exonuclease III, lambda exonuclease, RNAse T1, and treat
102 mino acids at Ser174, converts DNase I to an exonuclease III-like enzyme with DNA-repair properties.
103 tigated by hydroxyl radical footprinting and exonuclease III mapping.
104                                              Exonuclease III mediated in vivo DNA footprinting and di
105 in vitro reconstituted mononucleosomes using exonuclease III, micrococcal nuclease and restriction en
106 using a variety of nuclease probes including exonuclease III, micrococcal nuclease, DNase I, and rest
107                       Enzymatic digestion by exonuclease III of the nucleosome substrates revealed th
108        In contrast, yFACT enhanced access to exonuclease III only at very high levels of enzyme, sugg
109 erwise identical DNA sequence was incised by exonuclease III or endonuclease IV approximately 6-fold
110 er significant nuclease resistance to either exonuclease III or mung bean nuclease, but unexpectedly,
111 ichia coli xthA mutants have also shown that exonuclease III participates in the repair of oxidative
112 fer assays are then used in conjunction with exonuclease III protection analysis to investigate the e
113 merase II along a number of templates, using exonuclease III protection as our assay.
114 s, electrophoretic mobility shift assays and exonuclease III protection assays, we localized the basa
115                                              Exonuclease III protection revealed that CcpA protects a
116 , encoding the ribosomal protein L31 and the exonuclease III, respectively.
117  By mapping the breaks and by studies of the exonuclease III sensitivity of the broken ends, we concl
118 s faster than that recently observed for the exonuclease III surface hydrolysis of double-stranded DN
119  have suggested a role for Asn212 (Asn153 in exonuclease III, the bacterial homologue of HAP1) in sub
120                                              Exonuclease III, the E. coli homolog of Ape1, did not di
121 re, these results provide constraints on how exonuclease III-thiotriphosphate-polymerase combinations
122 orothioate linkages into DNA, and the use of exonuclease III to determine where those linkages have b
123  oxidized DNA by exploiting Escherichia coli exonuclease III to remove fragments containing direct st
124 units and the DNA could allow more access of exonuclease III to the DNA and account for the shorter f
125                                  Addition of Exonuclease III to the system allows the recycling of th
126                                     By using exonuclease III-treated linear duplex DNA with various l
127 DNA resistant to degradation in a subsequent exonuclease III treatment.
128  was excised from a 2D gel and identified as exonuclease III using matrix-assisted laser-desorption i
129                                We found that exonuclease III was consistently arrested at positions 1
130                 Independent experiments with exonuclease III, which probes the outermost DNA segments
131 method involving simultaneous digestion with exonuclease III, which removes linker DNA.
132 PdG adducts were protected from digestion by exonuclease III, which was consistently arrested at posi
133 rference method to probe the interactions of exonuclease III with the minor groove.
134 e AP endonuclease activities associated with exonuclease III (xth) and endonuclease IV (nfo), indicat
135 We have previously demonstrated that the two Exonuclease III (Xth) family members present within the

 
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