ライフサイエンスコーパス: expressed gene

1 re (MARCO) as the most highly differentially expressed gene.

2 eveals nutcracker as the only differentially expressed gene.

3 mark into the gene bodies of differentially-expressed genes.

4 ion network analysis of these differentially expressed genes.

5 pression networks and detect "modules" of co-expressed genes.

6 xymethylated regions and 5325 differentially expressed genes.

7 ions revealed few overlapping differentially expressed genes.

8 que time-dependent pattern of differentially expressed genes.

9 sis (WGCNA) to identify modules of highly co-expressed genes.

10 ifications, and specifically marked actively expressed genes.

11 artments and identified 2,196 differentially expressed genes.

12 , respectively, 1089 and 1549 differentially expressed genes.

13 tional subpopulations composed of nearly all expressed genes.

14 ion between disease genes and differentially expressed genes.

15 cies ranging from 0.07% to 100% in 38-58% of expressed genes.

16 ly over-represented among the differentially expressed genes.

17 ic/biotic stress treatments revealing 36 207 expressed genes.

18 ed to identification of ~6000 differentially expressed genes.

19 r silencing of all except a subset of weakly expressed genes.

20 nd causes downregulation of post-zygotically expressed genes.

21 k analysis (WGCNA) to identify modules of co-expressed genes.

22 ay be especially useful for detecting weakly expressed genes.

23 tandem repeat of 120 bp and ~1,000 germline-expressed genes.

24 tecting biologically relevant differentially expressed genes.

25 required for normal histone levels at highly expressed genes.

26 tion in cis with 146 of these differentially expressed genes.

27 -seq datasets by finding more differentially expressed genes.

28 moters (TSS) and terminators (TTS) of highly expressed genes.

29 The retrotransposon-derived paternally expressed gene 10 (PEG10) protein is ordinarily expresse

30 ACE2 was in a module of 681 co-expressed genes; 10 genes with moderate-high correlation

31 The most differentially expressed genes (153 downregulated and 60 upregulated) w

32 er heat stress, a total of 66 differentially expressed genes (25 down-regulated, 41 up-regulated) wer

33 7I-mutant cells identified 36 differentially expressed genes (26 downregulated, 10 upregulated) invol

34 A total of 1041 differentially expressed genes (282 down-regulated, 759 up-regulated) w

35 Of 410 differentially expressed genes, 286 were upregulated and 124 downregula

36 study, we demonstrate that lncRNA maternally expressed gene 3 (Meg3) interacts with the RNA binding p

37 requires an autophagic regulator, paternally expressed gene 3 (PEG3).

38 TMPRSS2 was in a module of 1,086 co-expressed genes; 31 of these genes were enriched in the

39 ificant increase in number of differentially expressed genes (367 vs. 3; P < 0.001) and dysregulated

40 course analysis revealed 5097 differentially expressed genes: 63 DEGs were viral genes and their expr

41 We found: i) that for the differentially expressed genes accounted for in the ME-model, 80% of th

42 Pol II pausing is observed in most expressed genes across the metazoan.

43 allows for the elucidation of differentially expressed genes across two or more conditions and is wid

44 tional enrichment analysis of differentially expressed genes after VP treatment revealed extracellula

45 PCR diagnostic test using two differentially expressed genes, AIM2 (absent in melanoma 2) and FAM26F

46 -1 (Thbs1) ranked as the most differentially expressed gene, along with the well-documented injury-re

47 While only a fraction of differentially expressed genes also exhibited differential DNA methylat

48 -usage preferences resemble those of broadly expressed genes and 'cell differentiation-induced' genes

49 s of this study identified 92 differentially expressed genes and 20 differentially expressed proteins

50 l for identifying cell type-specific, highly expressed genes and associated pathways.

51 This study examined differentially expressed genes and constructed gene co-expression netwo

52 sy explants to integrate both differentially expressed genes and differentially expressed proteins in

53 pe equivalents and identified differentially expressed genes and epigenetic loci.

54 Next, enrichments of differentially expressed genes and gene-gene connectivity within these

55 ping the distribution of DSBs along actively expressed genes and identifying the location of DSBs rel

56 ociated with elongating Pol II on the highly expressed genes and its ablation leads to reduced Pol II

57 ascertain aberrant methylated-differentially expressed genes and pathways associated with ESCC by com

58 feasible aberrant methylated-differentially expressed genes and pathways in ESCC by bioinformatics a

59 ed remarkable similarities in differentially expressed genes and proteins resulting from exposure of

60 data reveals a strong overlap between highly expressed genes and those distinguished by high mobiliti

61 e experiment, detects weak effects and lowly expressed genes, and decreases sequencing requirements b

62 The resulting network covers 77% of the expressed genes, and shows a scale-free topology and fun

63 , we observe that half of all constitutively expressed genes are never detected in any CRISPR screen

64 Many of the co-expressed genes are potentially targetable with existing

65 Although most new and narrowly expressed genes are rapidly lost, those that survive and

66 CIA-DCs differentially expressed genes associated with immunoregulation and wer

67 on newborn hearts identifies differentially expressed genes associated with maternal Cd exposure tha

68 lling the virus (elite controllers) robustly expressed genes associated with the T(H)1, T(H)17 and T(

69 xO1 binds to the promoters of 60% of cardiac-expressed genes at baseline and 91% after transverse aor

70 We found 1,809 and 2,127 differentially expressed genes at E16.5 vs. E14.5 in the WT and HM grou

71 genome sequencing to identify differentially expressed genes at selected time points during the recov

72 Furthermore, colon and bladder afferents expressed genes at similar levels, although different ge

73 ts Miner (DREM), we clustered differentially expressed genes based on gene expression profiles and as

74 atrix to categorize (cluster) differentially expressed genes based on their meta-patterns for intuiti

75 h the number of virus-induced differentially expressed genes being four- to sixfold greater in phloem

76 rrelates with upregulation of differentially expressed genes between 75% epiboly and 24 hpf stages.

77 ines, identifying hundreds of differentially expressed genes between cells from different somatic clo

78 onally, we identify groups of differentially expressed genes between habitats showing elevated geneti

79 iduals allowed us to identify differentially expressed genes between insulin resistant and sensitive

80 We show that (1) counts of differentially expressed genes between low- and high-nutritional backgr

81 with virtually no overlap in differentially expressed genes between males and females.

82 Differentially expressed genes between MPBC-HGT1 and cUC-HGT1 were expl

83 The most variably expressed genes between sites were involved in pathways

84 e observed approximately 91% homology in the expressed genes between the 2 sites.

85 Microarrays identified 36 differentially expressed genes between the three conditions (fold chang

86 We showed the differentially expressed genes between the two haploids in hybrid were

87 esent in the promoters of many embryonically expressed genes, but the combination of Zelda plus TATA

88 -cell signalling are enriched among the over-expressed genes by high responder phenotype.

89 ro-inflated Poisson distributions and models expressed genes by truncated normal distributions.

90 wo-component mixture model, which models non-expressed genes by zero-inflated Poisson distributions a

91 Of the differentially expressed genes, chitinase 1 (CHIT1) and cytochrome P450

92 Multiple differentially expressed gene clusters in pathways involving metabolism

93 e mutant line identified 2220 differentially expressed genes compared with its isogenic control.

94 ted protein-coding genes, 12,346 venom-gland-expressed genes constitute the 'venom-ome' and this incl

95 icate that fork pausing at the TTS of highly expressed genes containing R-loops prevents head-on conf

96 biphosphatase 3 (Pfkfb3) as a differentially expressed gene coupled to metastatic recurrence.

97 Sensitivity of detection for differentially expressed genes decreased dramatically with decreased ce

98 profile than ND-MSC, with 485 differentially expressed genes (DEG) - 280 upregulated and 205 downregu

99 We identified > 6000 differentially expressed genes (DEG), regardless of culture condition.

100 Determination of differentially expressed genes (DEG), using the R environment, revealed

101 A total of 1437 differentially expressed genes (DEGs) and 153 differentially expressed

102 RA patients were analyzed for differentially expressed genes (DEGs) and also by Weighted Gene Co-expr

103 l strategy: identification of differentially expressed genes (DEGs) and their functional pathway enri

104 l identified with a classical differentially expressed genes (DEGs) approach.

105 previous studies revealed the differentially expressed genes (DEGs) associated with EF-guided migrati

106 We identified 48 and 245 differentially expressed genes (DEGs) associated with schizophrenia wit

107 We identified 202 differentially expressed genes (DEGs) between the proliferative and sec

108 variation, we identified 106 differentially expressed genes (DEGs) between the SNpc tiers.

109 Differentially expressed genes (DEGs) defined three interconnected path

110 The Differentially Expressed Genes (DEGs) for lung cancer were isolated fro

111 h revealed that 23 out of 156 differentially expressed genes (DEGs) had known or predicted mitochondr

112 Analyses of differentially expressed genes (DEGs) highlighted oligodendrocyte (OL)

113 We obtained a total of 4305 differentially expressed genes (DEGs) in at least one tissue where sple

114 We identified 262 differentially expressed genes (DEGs) in HEU compared to HUU infants.

115 led to identification of 2338 differentially expressed genes (DEGs) in Lmna-deleted cardiomyocytes.

116 with R software to determine differentially expressed genes (DEGs) in pathologic tissues relative to

117 s formed revealed significant differentially expressed genes (DEGs) in Pkd2 single-knockout kidneys,

118 sed RNA sequencing to analyse differentially expressed genes (DEGs) in the mPFC following a reversibl

119 e three mutants we identified differentially expressed genes (DEGs) in the two frameshift mutant line

120 enic for Q revealed over 3000 differentially expressed genes (DEGs) involved in a number of pathways.

121 Identification of differentially expressed genes (DEGs) is well recognized to be variable

122 pairments are associated with differentially expressed genes (DEGs) linked to defined neural systems;

123 Here we identified the differentially expressed genes (DEGs) of circulating lymphocytes and mo

124 Interestingly, 94 differentially expressed genes (DEGs) overlapped between TS and female

125 y, 20.1% and 30.4% of diurnal differentially expressed genes (DEGs) overlapped with paclitaxel-induce

126 and that cells of vOrganoids differentially expressed genes (DEGs) related to blood vessel morphogen

127 We found multiple significant differentially expressed genes (DEGs) shared between AD/PD and viral in

128 This study identified 158 differentially expressed genes (DEGs) that were significantly increased

129 hypothesize that analysis of differentially expressed genes (DEGs) throughout the course of Lmna kno

130 ct fixation resulted in 2,946 differentially expressed genes (DEGs) vs. fresh-frozen, 98% of which we

131 ed oxygen (DO) the numbers of differentially expressed genes (DEGs) was 2.5-times lower than those ex

132 The number of differentially expressed genes (DEGs) was higher in Musa balbisiana in

133 A total of 2,566 unique differentially expressed genes (DEGs) were identified between compatibl

134 Forty-two differentially expressed genes (DEGs) were identified in association wi

135 Aberrantly differentially expressed genes (DEGs) were obtained by GEO2R tool.

136 A total of 1,158 differentially expressed genes (DEGs) were significantly altered in the

137 uit metabolites revealed many differentially expressed genes (DEGs) with differentially methylated re

138 Our analyses revealed 417 differentially expressed genes (DEGs) with log(2) fold change (FC) >|1|

139 to identify (1) sex-specific differentially expressed genes (DEGs), (2) genes that show sex-interact

140 ptome analysis detected 4,508 differentially expressed genes (DEGs), 1554 genes encoding transcriptio

141 d 830 significantly (P <0.05) differentially expressed genes (DEGs), 249 with fold change (FC) >2.

142 RNA-Seq analysis yielded 801 differentially expressed genes (DEGs), 566 up-regulated and 235 down-re

143 ormatic analysis to determine differentially expressed genes (DEGs), followed by gene ontology (GO),

144 nd the WT leaves revealed 360 differentially-expressed genes (DEGs), including 62 up-regulated and 29

145 The largest number of differentially expressed genes (DEGs), including both protein-coding an

146 , we identified 1662 and 1986 differentially expressed genes (DEGs), respectively.

147 ntially methylated (DMGs) and differentially expressed genes (DEGs).

148 d 2016), we identified 17,974 differentially expressed genes (DEGs; false discovery rate <0.05; log-f

149 We identified 1829 differentially expressed genes/DEGs in lesional AD and 662 DEGs in nonl

150 We performed differentially expressed gene detection before and after outlier remova

151 d trans and cis regulation of differentially expressed genes determining ear and tassel architecture

152 morphologically, we used two differentially expressed genes distinguishing IPF MPCs from control (CD

153 rtion of the more than 13,000 differentially expressed genes during the cell cycle.

154 In shoots, many differentially expressed genes, either up- or down-regulated, were invo

155 esults reveal that one highly differentially expressed gene, erythroid differentiation regulator-1 (E

156 dentify relevant responses of differentially expressed genes, even in the presence of significant noi

157 Strikingly, almost three-quarters of the expressed genes exhibited circadian rhythmicity.

158 hromatin protein 1 associates with variantly expressed gene families localised at subtelomeric region

159 ve, lineage-specific amplification of testis-expressed gene families, making it the most gene-dense Y

160 We identified 16 differentially expressed genes (FDR < 0.05) and numerous genes that co-

161 iling of the skin revealed 31 differentially expressed genes following decompression, with ADCYAP1 (e

162 e used to construct the top 10% specifically expressed genes for each of 53 tissues followed by linka

163 Fourteen additional highly expressed genes from other tissues also indicate contami

164 expressed proteins with their differentially expressed genes from single-cell transcriptomes of nonmy

165 rioritize, and explore biologically-relevant expressed gene fusions, downstream of fusion calling.

166 by the regulatory elements of the stem cell-expressed genes GLI family zinc finger 1 (Gli1) or achae

167 ups revealed 24 significantly differentially expressed genes (>=2.0-fold change, p-value < 0.05, FDR

168 ates, including histone methylation at H3K4 (expressed genes), H3K27 (silent genes), and H3K9 (silent

169 thway analysis of the top 100 differentially expressed genes has identified Rbfox2-regulated genes as

170 showed that GSK3A and RHOA were differential expressed genes identified by a cut-off of fold change >

171 t symptoms were evaluated and differentially expressed genes identified by comparative analysis with

172 Analysis of differentially expressed genes identified dysregulation of the pre-mRNA

173 e co-expression network analysis among 4,647 expressed genes identified two gene modules associated w

174 lly listed in the top 3% most differentially expressed genes in 2 or more studies of whole blood or p

175 low compared to the number of constitutively expressed genes in a cell.

176 We identified a core set of differentially expressed genes in all comparisons between women with an

177 ally expand the repertoire of differentially expressed genes in ASD and identify a component of upreg

178 itionally, minimal overlap of differentially expressed genes in auditory and vestibular hair cells su

179 ysis revealed that the top 12 differentially expressed genes in CKD were correlated with impaired mus

180 Hypomethylated and highly expressed genes in diploid sporophytes included genes in

181 encing (RNA-Seq) make it possible to catalog expressed genes in each cell line.

182 ng and identified significant differentially expressed genes in each group at each timepoint.

183 genes in platelets but only 4 differentially expressed genes in each of the other blood cell types.

184 e cis and trans regulation of differentially expressed genes in ear and tassel controlling infloresce

185 We identified 454 differentially expressed genes in hiPSC-derived neurons, enriched in pa

186 identified top GATA3-correlated cell surface-expressed genes in human ILCs by RNA sequencing.

187 es at baseline showed various differentially expressed genes in inflammatory pathways in PHEO patient

188 sis revealed a concise set of differentially expressed genes in juveniles fed the SBM-based diet, the

189 sis of the liver revealed 258 differentially expressed genes in male Fatp2 (-/-) mice and a total of

190 ng of E18 cortex revealed 320 differentially expressed genes in males, but none in females.

191 Here, we demonstrate that transiently expressed genes in mammalian cells compete for limited t

192 The differentially expressed genes in mice are enriched in neurons and micr

193 cally significant increase in differentially expressed genes in our patient-control study.

194 healthy controls showed 1194 differentially expressed genes in platelets but only 4 differentially e

195 tified a total of 163 and 568 differentially expressed genes in primary normal human bronchial epithe

196 uate the relative enrichment or depletion of expressed genes in RISC.

197 ftware, reliable detection of differentially expressed genes in RNA-seq data is not a trivial task.

198 We validated differentially expressed genes in selected neuronal populations through

199 resent about one-third of the differentially expressed genes in the brains of depressed humans and di

200 on isogenic lines to identify differentially expressed genes in the cystinosis models compared with c

201 Top differentially expressed genes in the early response to dithranol belon

202 s encoded on ecDNA are among the most highly expressed genes in the transcriptome of the tumours, lin

203 B cell markers were the most differentially expressed genes in the tumours of responders versus non-

204 revealed ~30% overlap between differentially expressed genes in Zbed6(-/-) and Igf2(DeltaGGCT) myotub

205 ve CREs within 50 Kb of the start or end of 'expressed' genes in these tissues or cell types using pu

206 al pathways impacted by these differentially expressed genes included cell signaling and morphogenesi

207 The differentially expressed genes included cytoskeleton-related genes (act

208 in methylation of a subset of differentially expressed genes, including BDNF.

209 that TBPL2 mediates transcription of oocyte-expressed genes, including mRNA survey genes, as well as

210 dentification and analysis of differentially expressed genes indicated that BRs orchestrate a wide ra

211 lower when analysed individually omitting co-expressed genes indicating bias.

212 ed Gdown1 leads to down-regulation of highly expressed genes involved in plasma protein synthesis and

213 of RNA-Seq data revealed 5608 differentially expressed genes, involved among others in Antigen proces

214 Identification of differentially expressed genes is necessary for unraveling disease path

215 luate the functional roles of differentially expressed gene lists by technically harmonized methods.

216 alyses identified a subset of differentially expressed genes located in cis to these regulated chroma

217 MAGEL2 is a maternally imprinted, paternally expressed gene, located in the Prader-Willi region of hu

218 f resorption identified 1,732 differentially expressed genes, many of which were characteristic of os

219 roximity to hitherto unknown monoallelically expressed genes, may represent new ICRs.

220 me analysis identified 807 maternally biased expressed genes (MBGs) and 581 paternally biased express

221 method for identification of Differentially ExpreSsed gene MOdules iN Diseases.

222 We also discovered differentially co-expressed gene networks that were functionally associate

223 the affected individuals included the brain-expressed genes NEXMIF, SLC16A2, and the long non-coding

224 We investigated differentially expressed genes of fungal communities and their host Dic

225 vided a comprehensive list of differentially expressed genes of healthy in situ chondrocytes in respo

226 The genome assembly contained 34,105 expressed genes, of which 10,076 were assigned to linkag

227 In metazoans, pairs of co-expressed genes often reside in the same chromosomal nei

228 list of GO-terms, e.g., from differentially expressed genes or gene sets, GWAS or biomarkers.

229 f RNA-seq data is to identify differentially expressed genes or transcripts while controlling for tec

230 aches, we identified reliably differentially expressed genes participating in distinct biological pro

231 essed genes (MBGs) and 581 paternally biased expressed genes (PBGs) in the preimplantation stages.

232 ant of developmental potential-the number of expressed genes per cell-and leverage this measure of tr

233 osures, including for the top differentially expressed genes-PIWIL2 and MGARP.

234 Among differentially expressed genes, pretreatment expression of CCL2 was sig

235 Remarkably, PNS macrophages constitutively expressed genes previously identified to be upregulated

236 However, most highly expressed genes produce 22G-RNAs through a distinct path

237 genetics is how sequence variants of broadly expressed genes produce tissue- and cell type-specific m

238 order is caused by the absence of paternally expressed gene products from chromosome 15q11-q13.

239 The differentially expressed gene profiles illustrated that intensive defen

240 Co-expressed genes ranked as the most stable genes in the T

241 evealed significant number of differentially expressed genes related to biosynthesis of secondary met

242 et, we identified 120 and 204 differentially expressed genes, respectively.

243 Examination of differentially expressed genes revealed potential effectors of MC funct

244 rapidly identify biologically meaningful co-expressed gene sets and facilitate discovery from high t

245 We examined Sirtuin-3 (Sirt3) co-expressed gene sets extracted from either liver or brain

246 this study was to identify and prioritize co-expressed gene sets in a hierarchical manner, based on t

247 marks is 42.3% and by CD4(+) T specifically expressed gene sets is 36.4%.

248 nd NetSML, to discover common differentially expressed genes shared across different cancer types as

249 t/signaling genes, from 1,023 differentially expressed genes shared between the two lines.

250 erent cancer types as well as differentially expressed genes specific to each cancer type.

251 rus with glands, but lack FOXA2-dependent GE-expressed genes, such as leukemia inhibitory factor (LIF

252 ne ontology analyses of these differentially expressed genes suggest that coinfection with virulent M

253 of RNA Polymerase II transcription of highly expressed genes, suggesting the existence of novel mecha

254 ung adults, genetic variants in >50 podocyte-expressed genes, syndromal non-podocyte-specific genes a

255 Differentially expressed gene targets were also enriched for gene ontol

256 birds identified hundreds of differentially expressed genes that are reportedly involved in key biol

257 ptomics analysis, we found 71 differentially expressed genes that are specific for the combination tr

258 endosperms reveals a group of differentially expressed genes that coincide with Mo2 QTLs, suggesting

259 highly motile cells revealed differentially expressed genes that correlated with poor prognosis.

260 uced defence to spider mites, differentially expressed genes that encode transcription factors (TFs)

261 Instead, the muscle cluster expressed genes that mediate skeletal muscle differentia

262 iptome analysis identified 12 differentially expressed genes that provided distinct expression signat

263 rthermore, we identify several modules of co-expressed genes that tightly correlate with critical the

264 The remaining 87% of expressed genes that we term 'TFIID-dependent' are highl

265 hange in expression for those differentially expressed genes that were common to both mouse lines, in

266 A sequencing identified 1,166 differentially expressed genes; the top five enriched gene ontology bio

267 We explored the biology of co-expressed genes using bioinformatics databases, and iden

268 etween species and the set of differentially expressed genes varied across tissues.

269 ritic subjects, the number of differentially expressed genes was expanded by sevenfold.

270 A Principal Component Analysis of all expressed genes was used to ascertain differences betwee

271 Conclusions The non-invasive differently expressed genes we have identified warrant future invest

272 tional enrichment analysis of differentially expressed genes, we validated the known genes and pathwa

273 In previous studies, the differentially expressed genes were detected across patients in one can

274 unaffected by mating, and no differentially expressed genes were detected at the most stringent sign

275 13 weeks of storage, over 900 differentially expressed genes were detected between well and badly sto

276 e, prenatal and age-dependent differentially expressed genes were enriched for genes implicated in no

277 The same five differentially expressed genes were externally validated using platelet

278 Although 82% of all expressed genes were found in the three ecotypes, they s

279 Co-expressed genes were identified from The Cancer Genome A

280 Differentially expressed genes were identified using Cuffdiff and DESeq

281 Six differentially expressed genes were identified when comparing transcrip

282 Differentially expressed genes were identified with DESeq2 software, us

283 Differentially expressed genes were implicated in oxidative phosphoryla

284 f infected dogs revealed that differentially expressed genes were mainly associated with inflammatory

285 Differentially expressed genes were markedly different between the 2 gr

286 The differentially expressed genes were modestly, but significantly, enrich

287 Close to 1,200 differentially expressed genes were modulated in the proximal colon of

288 The differentially expressed genes were mostly belongs to cellular function

289 Some of the top differentially-expressed genes were represented among regulators of the

290 y rate of less than 0.05, 132 differentially expressed genes were shared commonly among all ichthyose

291 ites and in an organ-specific manner; highly expressed genes were shown to have vital roles with knoc

292 Significant differential expressed genes were validated by QPCR.

293 We show that generating modules of co-expressed genes which are predicted by a sparse set of r

294 in this context is to discover groups of co-expressed genes, which can shed light on biological func

295 al isolation better reproduce differentially expressed genes, while chronic social defeat stress and

296 ription factors that regulate differentially expressed genes with an average auROC of 0.84, which is

297 h NLR loci, of which 1,560 were confirmed as expressed genes with intact open reading frames.

298 led to identification of 396 differentially expressed genes with large effect variants in the coding

299 l expression analysis: a large proportion of expressed genes with zero or low read counts ('dropout'

300 smembrane protein Pmepa1 as a differentially expressed gene within osteoclast progenitor cells.

301 of discrete cell subtypes and differentially expressed genes within the heart will ultimately facilit