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1 o 50 weeks and that it remained circular and extrachromosomal.
2 hat Deltalmxgt1-3 mutants contained a linear extrachromosomal 40 kb amplification of a region on chro
5 3K4me3 and greatly impaired recombination of extrachromosomal and endogenous immunoglobulin gene segm
15 In contrast, apoptosis is not enhanced by extrachromosomal arrays carrying genes not driven by ger
18 to the Caenorhabditis elegans germline forms extrachromosomal arrays that segregate during cell divis
19 the C. elegans germline, where conventional extrachromosomal arrays typically fail to express due to
20 dance of homologous templates present in the extrachromosomal arrays versus the paucity of such templ
21 d NHEJ in Schizosaccharomyces pombe using an extrachromosomal assay and find that, as anticipated, it
23 HMRa on a chromosome and on a nonreplicating extrachromosomal cassette as cells passed through S phas
27 elomere-enriched fractions revealed frequent extrachromosomal circles, ranging from 0.7 to 56.8 kb.
28 We also observed a substantial increase in extrachromosomal circular (ecc) repeated DNAs in mutant
32 ty in Amaranthus palmeri: a massive, ~400-kb extrachromosomal circular DNA (eccDNA) that harbors the
33 , a tandem duplication mechanism and a large extrachromosomal circular DNA (eccDNA) that is tethered
36 re, composition and genome-wide frequency of extrachromosomal circular DNA have not yet been profiled
37 omic approaches to describe the landscape of extrachromosomal circular DNA in neuroblastoma, a tumor
39 d lung carcinoma patients, the prevalence of extrachromosomal circular DNA molecules harboring amplif
40 administered clinically, on the stability of extrachromosomal circular DNA molecules in cancer cells.
42 noncoding RNAs, microDNAs, a family of small extrachromosomal circular DNA species, and tRNA-derived
45 e have identified tens of thousands of short extrachromosomal circular DNAs (microDNA) in mouse tissu
50 bpopulation of cells, PAPI-1 can exist in an extrachromosomal circular form after precise excision fr
52 tiple chromosomal copies and the presence of extrachromosomal circular forms of ICE6013 were detected
53 , we found that the VPI-2 region can form an extrachromosomal circular intermediate (CI) molecule aft
56 d for chromosomal integration, excision, and extrachromosomal circularization of these elements, and
57 rtional inactivation, and the development of extrachromosomal cloning vectors, genetic analysis of Bo
59 larization, integration, or the formation of extrachromosomal complex T-DNA structures that subsequen
60 ons showed that PR has modest activity in an extrachromosomal context but has activity that is barely
62 of aging or life span is the accumulation of extrachromosomal copies of rDNA circles in old mother ce
63 h multidrug-resistant KB cells, which harbor extrachromosomal copies of the multidrug resistance gene
64 . and that there is continuous generation of extrachromosomal copies of the translocated c-myc sequen
67 ngements in classical strains will not yield extrachromosomal CTX DNA and thus will not yield virions
68 erichia coli (ETEC) have largely centered on extrachromosomal determinants of virulence, in particula
69 chromothripsis is a major driver of circular extrachromosomal DNA (ecDNA) amplification (also known a
72 genes are commonly amplified on particles of extrachromosomal DNA (ecDNA) in cancer(1,2), but our und
73 demonstrated that oncogene amplification on extrachromosomal DNA (ecDNA) is a frequent event in canc
74 n be amplified in chromosomes or in circular extrachromosomal DNA (ecDNA), although the frequency and
78 ence changes associated with the presence of extrachromosomal DNA and nonselective persistence of pla
82 nce of episomes of T-cell antigen receptors (extrachromosomal DNA circles formed during intrathymic T
84 ant strains strongly reduced accumulation of extrachromosomal DNA compared with the single agnA- stra
87 our data demonstrate that the presence of an extrachromosomal DNA element in a pathogenic rickettsial
89 orrelia burgdorferi strain B31 MI carries 21 extrachromosomal DNA elements, the largest number known
91 For decades, scientists have observed small extrachromosomal DNA fragments in tumor cells, yet compr
92 bridizing fragments caused the appearance of extrachromosomal DNA hybridizing to the lytA gene, follo
95 everal DNA viruses maintain their genomes as extrachromosomal DNA minichromosomes in actively dividin
97 elements can transpose from relatively short extrachromosomal DNA molecules into the plant genome.
98 nduced cultures revealed the presence of two extrachromosomal DNA molecules, a double-stranded molecu
102 intimate relationship between host cells and extrachromosomal DNA that enables the dynamic acquisitio
117 e cassettes as stably replicating, circular, extrachromosomal DNAs, thus, expanding genome plasticity
119 evidence that ORD is concentrated within the extrachromosomal domains of the nuclei of Drosophila pri
121 plified DNA sequences are borne on unstable, extrachromosomal double minutes (DMs), which suggests th
123 he 70-kb virulence plasmid of Yersinia, this extrachromosomal element does not appear to harbor genes
125 he discovery of this previously unrecognized extrachromosomal element opens additional possibilities
128 ously called the D2 permease), on a circular extrachromosomal element, and they overexpress LmGT4 mRN
129 additional putative genes not expected on an extrachromosomal element, such as those encoding an elec
132 resistance is most commonly associated with extrachromosomal elements acquired from other bacteria i
135 ther support the idea of a critical role for extrachromosomal elements in C. burnetii pathogenesis.
136 hough TDH and TRH homologs can be encoded on extrachromosomal elements in V. cholerae, type III secre
138 pronounced impact of coevolution with these extrachromosomal elements on bacterial genome dynamics i
139 ction resulted in the generation of circular extrachromosomal elements varying in size from 8 to 300
141 orc10 (oriC2), and the largest peaks on the extrachromosomal elements were near orc9 (oriP1) in both
143 phosphorylated exhibit a high prevalence of extrachromosomal elements, hallmarks of perturbed replic
144 ue has no pseudogenes, introns, transposons, extrachromosomal elements, or inteins; few paralogs; and
149 epressive chromatin structure persists in an extrachromosomal environment immediately following remov
150 normal chromosomal context, as well as in an extrachromosomal episome containing an MLL bcr fragment.
151 -Barr virus (EBV) genome is maintained as an extrachromosomal episome during latent infection of B ly
153 enomes persist in latently infected cells as extrachromosomal episomes that attach to host chromosome
154 foreign sources to persist in the nucleus as extrachromosomal episomes, revealing a potential mechani
161 (constins) in that circular, nonreplicative extrachromosomal forms occur in which the left and right
163 n induction of the HO endonuclease, a linear extrachromosomal fragment is generated in each cell and
165 A statistically significant decrease in MDR1 extrachromosomal gene copy number was reproducibly detec
166 onal types encode additional chromosomal and extrachromosomal genes that facilitate the ability of E.
170 Here, we conditionally evicted the viral extrachromosomal genome from tumor cells in vitro to exa
172 2 protein maintains and segregates the viral extrachromosomal genomes by tethering them to cellular m
177 mpair both spontaneous and cisplatin-induced extrachromosomal homologous recombination and attenuated
183 ndicative of a crossover outcome) or remains extrachromosomal (indicative of a non-crossover outcome)
184 , which is ordinarily unable to generate the extrachromosomal intermediate required for SXT transfer.
185 ike lambda, the SXT element forms a circular extrachromosomal intermediate through specific recombina
187 near YACs could be detected, suggesting that extrachromosomal maintenance of DNA with the oriP /EBNA-
189 anti-CRISPR genes encoded on chromosomal and extrachromosomal MGEs within Enterobacteriaceae and Pseu
190 mosome to form a circular but nonreplicative extrachromosomal molecule that is required for its trans
192 Additionally, the results demonstrate that extrachromosomal, not integrated, genomes are the major
193 somes in other kinetoplastids, the T. brucei extrachromosomal NR-element is not generated by drug sel
196 ing on the cell-line UPCI:SCC090 confirm the extrachromosomal origin and fine structure of a Forkhead
197 m and other protists, the rDNA is carried on extrachromosomal palindromic elements that comprise up t
198 taining regions in mammalian chromosomes) or extrachromosomal palindromic molecules (equivalent to do
199 ssibility of each chromosomal att site to an extrachromosomal partner carried on a low-copy plasmid.
201 studies described here found no evidence for extrachromosomal plasmid DNA in any of the strains exami
202 ains, we could easily get transformants with extrachromosomal plasmid DNA when closed circular, repli
204 associated herpesvirus (KSHV) persists as an extrachromosomal plasmid in latently infected cells.
211 nmotile clones was present in the introduced extrachromosomal plasmids, while the motile MS17 clone w
214 wledge this is the first investigation using extrachromosomal probes containing a Fapy.dG or Fapy.dA
215 ences that, when transcribed from a powerful extrachromosomal promoter, can complement the auxotrophy
216 Further analyses provided empirical data on extrachromosomal prophages and coinfection prevalences,
217 AV, we previously described the existence of extrachromosomal proviral AAV genomes in human tissues.
218 determined the proportion of integrated and extrachromosomal rAAV genomes in mouse livers and their
220 ay a sacrifice during budding: they keep the extrachromosomal rDNA circles (ERCs) so that their buds
222 ds to rDNA instability and elevated level of extrachromosomal rDNA circles and nucleolar fragmentatio
223 ore, mutations of R102 cause accumulation of extrachromosomal rDNA circles and reduce life span, sugg
224 iation with rDNA and subsequent formation of extrachromosomal rDNA circles, and reduced cell survival
230 C) typically have either intrachromosomal or extrachromosomal rearrangements that join the promoter a
233 ed to the Dbeta 12-RSS over Jbeta 12-RSSs on extrachromosomal recombination substrates in nonlymphoid
235 ochromatin domains, mitotic chromosomes, and extrachromosomal regions of mitotic cells by quantitativ
244 rsely, silencing the Smc5/6 complex enhances extrachromosomal reporter gene transcription in the abse
245 hibits the stimulatory effect of HBx both on extrachromosomal reporter genes and on hepatitis B virus
248 ts in dna2 mutants, although in dna2 mutants extrachromosomal ribosomal circles do not accumulate dur
251 a marked increase in the cellular content of extrachromosomal ribosomal DNA circles (ERCs), which can
254 ence factors - including protein aggregates, extrachromosomal ribosomal DNA circles, and abnormal nuc
255 oxically, it also leads to the production of extrachromosomal ribosomal DNA circles, which cause yeas
267 dGTP pools result in altered N regions in an extrachromosomal substrate transfected into T-cell or pr
268 frequent, cryptic RS that rearrange both in extrachromosomal substrates and in their genomic context
269 f normal murine thymocyte development and on extrachromosomal substrates induced to undergo recombina
272 ss switch DNA recombination (CSR), including extrachromosomal switch circular DNAs and circle transcr
273 experiments that assayed recombination of an extrachromosomal switch substrate during transient trans
274 sed from the genome serves as a template for extrachromosomal synthesis of its double-stranded DNA co
276 A molecules resulted in an increased rate of extrachromosomal T-DNA to T-DNA recombination, indicatin
279 associated promyelocytic leukemia bodies and extrachromosomal telomere repeats; however, no alteratio
280 recently that ALT cells have a high level of extrachromosomal telomeric circles (t circles) that may
284 yper-ALT phenotype, including an increase in extrachromosomal telomeric repeat DNAs, putative recombi
286 The break is repaired by copying DNA from an extrachromosomal template into the chromosomal site.
290 mosomal deletions, as well as integration of extrachromosomal transgenes, which complements those der
291 rmed by intermolecular recombination between extrachromosomal Ty1 cDNA molecules before or during int
293 From a single progenitor line carrying an extrachromosomal unc-54::gfp transgene array, we generat
295 transgene expression primarily results from extrachromosomal vector genomes, a series of experiments
297 that all components are present on a stable extrachromosomal vector that can replicate in a wide var
299 ed in the formation and/or maintenance of an extrachromosomal viral episome in vivo, which is likely