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2 luence on binding, while modification of the flanking 0CG, particularly carboxylation, has a strong p
3 tional transcription, such that the upstream flanking -1 H2A.Z-containing nucleosome is more appropri
5 e residues are located in disordered domains flanking a 12-amino acid-long amphipathic helix (residue
7 two nanometric layers enriched in magnesium flanking a core rich in sodium, fluoride and carbonate i
10 m changes in tandemly repeated cis sequences flanking a transposable element (a miniature inverted re
12 chuchner et al and Frohner et al report that flanking amino acids and an underappreciated posttransla
13 e injected plasmids with sequence variations flanking an I-SceI endonuclease recognition site into I-
16 ther than dsDNA, loop or bulge regions, with flanking bases influencing the degree of preference.
17 upport PU.1 binding as a monomer, additional flanking bases were required to invoke sequential dimeri
18 T3' dinucleotide target sites, and different flanking bases within diverse DNA secondary structures.
22 , NR2F2 directly activated enhancer elements flanking cell cycle genes to drive their expression.
23 comprised of the branchpoint and of the two flanking centers (C4-C5-C6 in aldoheptoses and higher an
24 st when the speed bump was near the end of a flanking chain, and (b) macrocycle cavity size, which wa
25 different substituents (speed bumps) on the flanking chains and two macrocycles with different cavit
27 ain protein, ZMYND8, which spreads along the flanking chromatin, but is excluded from the DSB region.
28 arrangement and leads to decompaction of DSB-flanking chromatin, reduction in interchromatin space, a
32 cRNA biogenesis, including length of introns flanking circularized exons, repetitive elements such as
34 bronectin adheres the neural tube to the two flanking columns of paraxial mesoderm and is required fo
35 ne amplicon sequencing revealed the dominant flanking community members in both reactors were affilia
37 ll line-based experiments have identified 5'-flanking conserved sequences that control pancreatic and
38 ls containing CpX target sites in randomized flanking context and identified combined effects of CpG
40 t palindromic repeat (CRISPR) loci and their flanking CRISPR-associated (cas) genes make up RNA-guide
41 , 28S D2/D3 and a mitochondrial DNA fragment flanking cytochrome oxidase gene subunit II - the interg
43 gurations (S (p) and R (p)) at six different flanking dinucleotide sites, i.e. XT and TX (X = A, C, o
44 act weakly with both the ipso-carbons of the flanking Dipp groups and the boron centres of the diazab
45 ntrolled pharmacology study, we measured how flanking distractors influenced detection of a small con
47 ose to execute cleavage, open to release the flanking DNA and close again to capture and attack targe
49 mplexes, the crescent-shaped BMVC recruits a flanking DNA residue to form a BMVC-base plane stacking
51 tion unit, but rarely more than 50-100 kb of flanking DNA, even when multiple neighboring genes are a
52 and favoring bidirectional progression into flanking DNA, typically to a maximum of 15 nucleotides i
56 rone activity against amyloid formation, the flanking domains contribute additional and important cha
60 eased by targeting both G-quadruplex and its flanking duplex DNA in a naturally occurring dsDNA-ssDNA
66 ption factor (TF) binding regions and at the flanking eRNA initiation regions, both of which are asso
68 t AS by binding to exons at coding sequences flanking exons that are more frequently skipped in clock
69 le, we found extended haplotype homozygosity flanking FMF-associated mutations, indicating evolutiona
72 uplexes, (th)G's hypochromism was larger for flanking G/C residues but its fluorescence quantum yield
74 nascent transcript levels for several Hsp70 flanking genes also correlate with speckle association a
76 termined that one enhancer activates the two flanking genes in mammary tissue during pregnancy and la
80 lso observe long-range allosteric changes in flanking helices consistent with winding/unwinding in he
81 ins is concluded to increase the mobility of flanking helices, giving rise to increased off rates for
82 ndicate that when ATP hydrolysis is present, flanking heterologous dsDNA regions increase the reversi
85 nct topologically associating domains (TADs) flanking HoxD, both containing a range of appropriate en
86 quence in its att sites, active 'attB' sites flanking human deleterious mutations were previously ide
87 ilaments are prevented from piling up in the flanking internodes, ensuring a stable neurofilament dis
88 tivated region more rapidly in nodes than in flanking internodes, indicating that neurofilament trans
89 that, in addition to the globular domain, a flanking intrinsically disordered region also recognizes
91 ity, and the predominant circRNAs had longer flanking introns and more Alu elements than other circRN
92 usion and instead promoting the retention of flanking introns containing repeated SRSF7 binding sites
93 circulation and RNA editing in back-splicing flanking introns; (ii) a two-stage DE approach of circRN
94 mechanism for setting deletion boundaries by flanking inverted repeats in Tetrahymena thermophila.
96 dent lineage-specific segmental duplications flanking LCR16a leading to the emergence of large inters
100 sed under phosphate-replete conditions by 5' flanking lncRNAs prt, prt2, and nc-tgp1, respectively.
102 essing cells, and the presence of loxP sites flanking M2 did not alter viral replication or latency i
105 lly, and unexpectedly, the crossover rate of flanking markers tens of kilobases away from the sequenc
106 reactions of the morpholine moiety with the flanking meso-aryl groups leads to a sharpened, blue-shi
108 increase in the proportion of deletions with flanking microhomology, a signature associated with a ba
111 variant H2A.Z from the -1 and +1 nucleosomes flanking NDRs; however, Ino80C's function in transcripti
113 tations at canonical dinucleotides (73%) and flanking noncanonical positions (27%), and calculate the
119 etrotransposon presence/absence patterns and flanking nucleotide changes suggest an important influen
120 d resolved these preferences into individual flanking nucleotides and periodic poly(A) tracts that ro
125 n of conserved core PCR primer binding sites flanking polymorphic haplotypes with high information co
128 a unique sequence-context specificity, i.e. flanking purines at the 5' end of the mutated nucleotide
129 Our data indicate the PRRAR sequence and the flanking QTQTN sequence are not fixed in vitro; thus, th
130 Interestingly, the inversions are nested or flanking rather than coinciding with the deletion or dup
131 binding site accessibility, as determined by flanking region AU content, could fully explain the disc
133 ion of ZmBCH2, we isolated 2036 bp of the 5'-flanking region containing the 263 bp 5'-untranslated re
134 all proteins containing the TM and a limited flanking region homologous to the fusion protein of the
138 putative regulatory sequence in the ULK1 5'-flanking region, the mutation of which increased ULK1 pr
140 proven by the characterization of transgene flanking regions and the combinations of elements that a
141 ns of SLF genes, resulting in highly similar flanking regions between different types of SLF and betw
142 he high degree of sequence similarity in the flanking regions could often be explained by the presenc
144 reening for polymorphism and ensure that the flanking regions do not have length difference that woul
146 CpG dinucleotides located within binding or flanking regions for the transcriptional regulator CCCTC
147 ment of TFs and cofactors in gene bodies and flanking regions in gene lists without an a priori binar
148 PL35a and RPL23, and ferredoxin, FDX1, whose flanking regions including promoters, terminators and un
151 V genomes were significantly enriched in the flanking regions of 84.5% the integration sites, with a
152 Hippocampal cis-meQTL-CpGs are enriched in flanking regions of active promoters, CpG island shores,
155 s revealed potential genetic exchange in the flanking regions of SLF genes, resulting in highly simil
156 ein binding sites and CpG islands within the flanking regions of the circular RNA back-spliced juncti
157 ining all the introns, exons, and 5'- and 3'-flanking regions of the hCYP11B2 gene containing either
159 xamining the evolutionary properties of gene-flanking regions on the X Chromosome, we find evidence t
160 enhancer cluster or parts thereof, Nppb and flanking regions or the entire genomic block spanning Np
161 at topologically associating domain boundary-flanking regions showing high interaction frequencies wi
163 elongation early in transcription, and in 3' flanking regions where termination is enhanced by TFIIS(
164 l causal variants are enriched in coding and flanking regions, as well as in regulatory elements, and
165 eously to identify genes, predicted promoter flanking regions, transcription factors and CTCF binding
172 emergence of global gene regulation via the flanking regulatory landscapes, to optimize a coordinate
177 ich lines the anesthetic-binding cavity, its flanking residues (132 to 140), and Leu-122, a pore-gati
178 II molecules (HLA-II), which through peptide-flanking residues (PFRs) can extend beyond the limits of
181 by forming compensatory interactions to the flanking residues including a CpG specific contact to an
183 loading intermediate, when either one of the flanking roadblocks was eliminated, the remaining roadbl
185 rin-like cleavage site itself (NSPRRAR) or a flanking sequence (QTQTN), and we investigated these del
188 also observed a previously unappreciated CpG flanking sequence bias in major and minor satellite repe
189 ger than transcription factor binding sites, flanking sequence can be used to target specific sites.
190 fied combined effects of CpG recognition and flanking sequence interaction together with complex cont
192 well as DNMT3A Arg882His variant acquire CpG flanking sequence preference akin to that of DNMT3B, whi
194 tle differences suggesting a co-evolution of flanking sequence preferences and cellular DNMT targets.
198 followed by sequencing, we recovered 388 888 flanking sequence tags (FSTs) from 21 741 insertion line
200 uncover the intricate interplay between CpG-flanking sequence, DNMT1-mediated base flipping and the
201 DNA substrates revealing that DNMT1 employs flanking sequence-dependent base flipping mechanisms, wi
204 ceptor sites including those with suboptimal flanking sequences and sites located within cysteine-ric
205 on and highly dispersed in the genome, their flanking sequences are conserved at about 90 to 95% iden
208 nt defects, but minor perturbations from the flanking sequences are sufficient to reduce the defects
210 o different LOV2-based switches reveals that flanking sequences can lead to relaxation times up to 11
214 erfering RNAs were enriched in the 5' and 3' flanking sequences of nonadditively expressed genes in t
215 a values predicted from structures, although flanking sequences of S-palmitoylated sites are enriched
216 In this study, we demonstrate that the 5'-flanking sequences of the C(4) type phosphoenolpyruvate
219 develops a general approach for identifying flanking sequences that can be used to drive transgene e
223 ighly expressed genes in Chlamydomonas whose flanking sequences were tested for the ability to drive
231 ons of the capsid (CA) domain of Gag and the flanking spacer peptide SP1 that stabilize VLPs, but muc
232 ds on the position and nature of nucleotides flanking splice sites, and on structural interactions be
233 thogens and whose activity is repressed by a flanking substrate-binding leucine-rich repeat (LRR) dom
235 mers, with a pair of C-terminal domains from flanking tetramers completing the synaptic interface.
236 the high charge-density saccharide residues flanking the "canonical" antithrombin-binding hexasaccha
237 nditional Pam(cKO/cKO) mice, with loxP sites flanking the 2 exons deleted in the global Pam(KO/KO) mo
240 el conformation, suggesting that the residue flanking the amyloidogenic peptide contributes to the st
242 "sensory motif" and two loops, RL1 and RL2, flanking the ATP-binding site playing a significant role
243 es circRNA biogenesis by binding the introns flanking the back-splicing junctions and that this contr
245 selective elimination of glycosylation sites flanking the CD4bs, and 2) minimize the nND immune respo
248 The specificity of AR extends to the regions flanking the core 15-bp site, where isothermal calorimet
249 elative position of the core motif and bases flanking the core motif play an important role in modula
250 ing affinity is greatly enhanced by residues flanking the crystallographically-defined recognition mo
254 es while sparing well-positioned nucleosomes flanking the enhancer core, indicating that inducible TF
255 nd UV-VIS absorbance spectroscopy of samples flanking the fat, may be an important factor in cellular
257 gest that removal of the repressed chromatin flanking the GAA tract might contribute to rescue FXN to
259 novel six-amino-acid C-terminal motif (CTM) flanking the homeodomain that serves as a major determin
260 ver, the analysis of the enhancer landscapes flanking the HoxD cluster reveals that the bimodal regul
262 am open reading frames, specific nucleotides flanking the initiating AUG codon, protein coding sequen
263 We have identified two CTCF binding sites flanking the locus and two associated with a super-enhan
266 igned a series of single guide RNAs (sgRNAs) flanking the mutation and provided different single-stra
267 ther enables recognition of charged residues flanking the nascent TMD and thus explains the specifici
268 the Neurexin2 AS4 exon, compared with those flanking the Neurexin1 and Neurexin3 AS4 exons under joi
269 flexibility to wedge the RCC1 beta-propeller flanking the NLS against its lateral surface, preventing
270 sliding has been shown to depend on the DNA flanking the nucleosome, transcription factor binding at
271 d, to a lesser extent, in the switch regions flanking the nucleotide binding site, can shed light on
272 cleavage, we mutagenized the eight residues flanking the prelamin A scissile bond (TRSY LLGN) to all
276 ity is strongly amplified by the DNA regions flanking the recognition site, which contain long tracts
278 eading to excitation of a tryptophan residue flanking the retinal chromophore, as a first manifestati
280 Here, we detect intrinsic instability in DNA flanking the RNA-3' side of R-loops, which Cas12a can ex
282 interactions occur with unstructured regions flanking the rod domain during oligomeric assembly.
283 , we discovered ligase-activity determinants flanking the S1 site, namely LAD1 and LAD2 located aroun
290 ade the upstream and downstream RNA segments flanking the target sequence upon hybridization to speci
291 of a short protospacer adjacent motif (PAM) flanking the target site, and subsequent R-loop formatio
292 a deep mutational scan showing that residues flanking the Tn-glycan contributed significant binding e
293 e promoter elements, which are DNA sequences flanking the transcription start site (TSS) that help di
294 The Phi31 and Bxb1 integrase attP sites flanking the transgene will also enable rapid directiona
296 nformational changes control the path of DNA flanking the transposon end and the generation of DNA-bi
297 nces, we have derived 20-amino-acid peptides flanking this region of interest in order to test the ab
298 ation-the addition of subsidiary cells (SCs) flanking two dumbbell-shaped guard cells (GCs)-is linked
299 a HSP78 (LmxHSP78+/-) were generated using a flanking UTR-based multifragment ligation strategy and t
300 ies of recombination signal sequences (RSSs) flanking Vbeta gene segments suppress the assembly and e