1 oising (RAD), and a webserver interface, are
freely available.
2 a semi-automated way and with tools that are
freely available.
3 All data and protocols are
freely available.
4 d derived libraries and related software are
freely available.
5 Therefore, our data sets and models are made
freely available.
6 EBONI is open source and
freely available.
7 and sample databases with documentation are
freely available.
8 rovide a description of a code we are making
freely available.
9 orporated into a searchable database that is
freely available.
10 ge implementation of SWAN is open source and
freely available.
11 are underlying our method, Coalescenator, is
freely available.
12 The BioNetFit source code (Perl) is
freely available.
13 at utilizes the GNU Scientific Library, also
freely available.
14 The Cell Component Ontology is
freely available.
15 al techniques and other quantitative methods
freely available.
16 of our study, all the data reported are made
freely available.
17 w gene classification methods have been made
freely available.
18 A computer program is
freely available.
19 wer than 100 sequences in some cases, and is
freely available.
20 All processed data in the database are
freely available.
21 enDose collaboration is to generate and make
freely available a range of dosimetric data and tools.
22 The PROMIS-GI is a
freely available,
adaptable, normatively referenced symp
23 The datasets created in this paper will be
freely available after publication.
24 of human genomic databases, the existence of
freely available alternative data and metadata sources,
25 We find that, depending upon the amount of
freely available amino acid in the environment, this pai
26 The database is
freely available and can be easily scaled and updated to
27 pong is
freely available and can be installed using the Python p
28 bles of the scientific literature, making it
freely available and easily searchable to the public.
29 It is
freely available and encompasses stand-alone scripts for
30 canners (10 patients per scanner) using five
freely available and fully-automated WMH segmentation me
31 RNAmod is
freely available and meets the emerging need for a conve
32 nome-wide association studies (GWAS) are now
freely available and offer a catalogue of the associatio
33 Terminus is implemented in Rust, and is
freely available and open source.
34 Towards this goal, we developed a
freely available and open-source package, called PseKNC-
35 present the R package Fragman to serve as a
freely available and platform independent resource for a
36 ies turns in an input protein structure, are
freely available and redistributable from dunbrack.fccc.
37 The software is open source,
freely available,
and easily integrated into UIMA or GAT
38 er for Biotechnology Information (NCBI) is a
freely available archive for interpretations of clinical
39 IgRepertoireConstructor is open source and
freely available as a C++ and Python program running on
40 An implementation is
freely available as a Cytoscape app.
41 bitor and activity cliff information is made
freely available as a part of our study.
42 Our method is
freely available as a part of the NOn-Linear rigid Block
43 It is
freely available as a precompiled binary package for eve
44 ey compounds, and activity profiles are made
freely available as a resource for medicinal chemistry a
45 All data and models are
freely available as a resource for the community.
46 3 license and is
freely available as a standalone program or as a tool fo
47 epTools continue to be open to all users and
freely available as a web service at deeptools.ie-freibu
48 tion where a low-value reward (lab chow) was
freely available as an alternative to pressing for sucro
49 The tool is
freely available as an R package (CorrectOverloadedPeaks
50 DMRMark is
freely available as an R package at the CRAN R package r
51 AutoTuner is
freely available as an R package through BioConductor.
52 MDTS is
freely available as open source software from the Biocon
53 RCK is
freely available as open source software.
54 phenoVein is
freely available as open-source software.
55 ed to any UMI-based scRNA-seq dataset and is
freely available as part of the R package sctransform, w
56 The updated version of TurboFold II is
freely available as part of the RNAstructure software pa
57 ts data from the UK Biobank and can be found
freely available at biobankengine.stanford.edu.
58 s in in vitro or in vivo drug studies and is
freely available at github.com/agnesblch/MetIDfyR.
59 PRANC is written in C++ and
freely available at github.com/anastasiiakim/PRANC.
60 The software is
freely available at github.com/BioContainers/.
61 The software and computed UHSs are
freely available at github.com/Shamir-Lab/DOCKS/ and acg
62 TAP is
freely available at opig.stats.ox.ac.uk/webapps/sabdab-s
63 This application is
freely available at platedesigner.net.
64 ToxDock is
freely available at rosie.rosettacommons.org/tox_dock.
65 Java-based ProteinVolume executable is also
freely available at this web site.
66 Overall, our
freely available Atlas of White Matter Function will ena
67 We demonstrated how
freely available binary classification algorithms can be
68 ide an implementation in the open source and
freely available BioNetGen framework, but the underlying
69 All HPC-7 data sets are
freely available both through standard repositories and
70 QwikMD is
freely available by download on group and personal compu
71 Kinpute is an open-source and
freely available C++ software package that can be downlo
72 enrichment that is implemented in Python, is
freely available,
can be efficiently parallelized, and i
73 seizure detection algorithms, achieved using
freely available code and data, sets a new reproducible
74 This
freely available combination requires minimal infrastruc
75 In GNPS, crowdsourced curation of
freely available community-wide reference MS libraries w
76 the application of simple (and in many cases
freely available)
computational tools can be used to dev
77 Using
freely available computer science tools (Google Books Ng
78 Here we present a
freely available curated library of implanted electrocor
79 plicable in resource limited settings, using
freely available curriculum materials, existing programm
80 The comparison of LipidMS with
freely available data dependent acquisition (DDA) and DI
81 other states using an open source model and
freely available data sets.
82 in shareable scientific workflows using only
freely available data, services, and software that scale
83 InterPro is a
freely available database used to classify protein seque
84 and WikiPathways are two of the most popular
freely available databases for biological pathways.
85 lts of our analysis are accessible through a
freely available,
dedicated and user-friendly R/Shiny ap
86 data VEP-G2P performs well compared to other
freely-available diagnostic systems and future phenotypi
87 In this study, we developed the first
freely available direct phototransformation pathway pred
88 The source code for ATLAS is
freely available,
distributed under a BSD-3 license.
89 The algorithm was implemented in new
freely available Dr Fit software (sourceforge.net/projec
90 c community has been hampered by the lack of
freely available,
efficient algorithms and an accompanyi
91 Here we show that
freely available environmental and geographic distance v
92 Freely available extension to ImageJ2.
93 w dose cocaine reinforcement when cocaine is
freely available (
fixed ratio schedule).
94 The Pathway Tools software is
freely available for academic research and is available
95 unter is open source, written in Python, and
freely available for academic use.
96 sgnesR is
freely available for academic use.
97 a highly sensitive and accurate tool that is
freely available for academic use.
98 ts like MATLAB, and all its dependencies are
freely available for academic users.
99 TCGA SpliceSeq is
freely available for academic, government or commercial
100 systemPipeR is
freely available for all common operating systems from B
101 ailable web services, the code for ePlant is
freely available for any other biological species resear
102 GPMDB data and database tables are
freely available for commercial and non-commercial use.
103 These data are
freely available for download and visualization online.
104 Software is
freely available for download at genetics.cs.ucla.edu/ca
105 The software is
freely available for download at github.com/sanger-patho
106 The raw RNA-Seq data is
freely available for download from NCBI SRA (Accession:
107 GToTree is open-source and
freely available for download from: github.com/AstrobioM
108 All tools in the GSS are
freely available for download under the GPL v3.0 license
109 Eagle2 is open source and
freely available for HRC-based phasing via the Sanger Im
110 GEO2Enrichr is an open source tool,
freely available for installation as browser extensions
111 Executable versions of the program are
freely available for Mac OSX and Windows operating syste
112 The implementations are
freely available for non-commercial purposes.
113 ual machine image of the entire site is also
freely available for non-commercial use and contains mos
114 The SinCHet software is
freely available for non-profit academic use.
115 SBOL Visual is a community standard,
freely available for personal, academic, and commercial
116 While XCMS-based software is
freely available for untargeted analysis of mass spectro
117 Both tools are open source (MIT license) and
freely available for use online through CoGe.
118 In this study we use our
freely available framework for fitting and comparing non
119 ed the method into R package ENmix, which is
freely available from Bioconductor website.
120 of the electromagnetic spectrum and is made
freely available from biosignatures.astro.cornell.edu.
121 part of R package InfiniumPurify , which is
freely available from CRAN.
122 into existing metabolomics pipelines and is
freely available from CRAN.
123 Our R package GOxploreR is
freely available from CRAN.
124 rity network workflow used here, SSNpipe, is
freely available from GitHub.
125 for carbonaceous sorbents and/or parameters
freely available from online databases.
126 with a graphical user interface, GENFIRE is
freely available from our website and is expected to fin
127 he method into the R package ENmix, which is
freely available from the Bioconductor website.
128 The cit open-source R package is
freely available from the CRAN website with embedded C +
129 code and documentation of the framework are
freely available from the project web site.
130 KODAMA is
freely available from the R archive CRAN.
131 EBglmnet package is
freely available from the R archive CRAN.
132 ow within the user-friendly, transparent and
freely available Galaxy platform (galaxyproject.org).
133 input, calls on several well-established and
freely available genome-analysis tools, and outputs the
134 tory for 35 common cancer traits integrating
freely available genome-wide association studies (GWASs)
135 input, call on several well established and
freely available genomic analysis tools to call SNPs and
136 tions to nonprofit academic users, affording
freely available high-quality, low-cost molecular weight
137 eneral English and biomedical literature are
freely available;
however, their validity as a substitut
138 EBI metagenomics is a
freely available hub for the analysis and archiving of m
139 The amount of
freely available human phenotypic data is increasing dai
140 such datasets, CytoCensus outperforms other
freely available image analysis software in accuracy and
141 As a
freely available ImageJ plugin that requires no highly s
142 Here, we present FiloQuant, a
freely available ImageJ plugin, to detect filopodia-like
143 It is
freely available in 20 countries (iOS and Android platfo
144 The data are
freely available in a public resource to foster diagnost
145 date collection of trait-associated SNPs are
freely available in Bioconductor
146 We make our tool
freely available in Brain Imaging Analysis Kit (BrainIAK
147 PINBPA app is
freely available in Cytoscape app store.
148 BUAN is
freely available in DIPY.
149 ble to a broad range of study questions, and
freely available in open source software.
150 All methods used are implemented and
freely available in R.
151 for implementing lossless data reduction is
freely available in the Appendix.
152 These annotated models are
freely available in the Physiome Model Repository (PMR).
153 dual lab to the vast amount of relevant data
freely available in the public domain might be limited d
154 The software is now
freely available in the web server of Qprob.
155 tal approaches catch up with an avalanche of
freely available informatics data.
156 methodologies we show that when the level of
freely available iron in the environment drops below a c
157 e newly identified compounds were added to a
freely available mass spectral reference database of 219
158 Here, we present a new,
freely available modelling framework that includes a bio
159 Here we present PLUMED-ISDB, an open-source,
freely-available module of the popular PLUMED library, w
160 re the pace of aging between the sexes using
freely available mortality data from 13 high-income coun
161 Finally, we constructed a
freely available NPdenovo database, which provides a com
162 We aimed to compare the accuracy of
freely available objective surgical risk tools with subj
163 implemented in the R package NNLM, which is
freely available on CRAN and Github.
164 o the powerful genomics R-package PopGenome,
freely available on GitHub (pievos101/PopGenome) and the
165 Both the package and image datasets are
freely available on GitHub and the Broad Bioimage Benchm
166 Both packages are
freely available on GitHub and via the Python Package In
167 Source code is
freely available on GitHub under a GNU General Public Li
168 The plans for the 3D-printed model are
freely available on GitHub, as are editable files to all
169 ed scripts in the open-source R language are
freely available on GitHub, targeting users with interme
170 PIXiE is an open-source tool,
freely available on Github.
171 ecompiled binaries and platform packages are
freely available on GitHub: github.com/scwatts/FastSpar.
172 KCMBT is
freely available on GitHub:.
173 A mobile phone app (Allergy Diary, which is
freely available on Google Play and Apple stores) was us
174 study used a self-administered questionnaire
freely available on social networks and targeted women w
175 l source code and a detailed usage guide are
freely available on Sourceforge.
176 tcpl is
freely available on the Comprehensive R Archive Network
177 Here we present FluxFix, an application
freely available on the internet that quickly and reliab
178 Drug Targetor v1.21 is a web application
freely available online at drugtargetor.com and under MI
179 m (Gretel) are open source, MIT licensed and
freely available online at github.com/samstudio8/hansel
180 make the results of research immediately and
freely available online for all to read and use, the Eur
181 The entire Database Issue is
freely available online on the Nucleic Acids Research we
182 The Candida Genome Database is a
freely available online resource that provides gene, pro
183 The density maps,
freely available online, are the first for these regions
184 ther, the software developed in this work is
freely available online.
185 CRISPulator is
freely available online.
186 prediction tools have been designed and made
freely available online.
187 rce software and carefully annotated dataset
freely available online.
188 This software is
freely available only for noncommercial users.
189 Goldilocks is
freely available open-source software distributed under
190 ll stages of the workflow design, we rely on
freely available open-source tools, to make our workflow
191 We developed a
freely available,
open source software package MAtrix-De
192 Transcription Fit (Tfit) is a
freely available,
open source software package written i
193 Pgltools is a
freely available,
open source tool suite for manipulatin
194 e Format Input and Output) is presented as a
freely available,
open-source library unifying the mecha
195 ibes common pitfalls, and relies only on our
freely available,
open-source R implementation of LIGER.
196 Implemented as a
freely available,
open-source tool in the platform indep
197 The
freely available parcellation and classifier will enable
198 It expands on an existing,
freely available pathology image viewer, Sedeen.
199 ules have been implemented in N otung 2.9, a
freely available phylogenetic reconciliation software pa
200 In addition to the
freely available Primerize-2D server, the primer design
201 e to generate linkage map graphics, none are
freely available,
produce publication quality figures, a
202 we developed Lab Retriever, an open-source,
freely available program that forensic scientists can us
203 This
freely-available program can be broadly used by biologis
204 ClinVar is a
freely available,
public archive of human genetic varian
205 It requires Python 2.7 and several
freely available Python packages.
206 For statistical analysis the
freely available R and the ggpubr package are also requi
207 The method has been incorporated into the
freely available R package BhGLM, providing a useful too
208 The methods have been implemented in a
freely available R package BhGLM.
209 The
freely available R package HiCRep implements our approac
210 The
freely available R package scDD implements the approach.
211 BhGLM is a
freely available R package that implements Bayesian hier
212 NBZIMM is a
freely available R package that provides functions for s
213 Our method is implemented in the
freely available R package zigzag.
214 The proposed method is implemented in a
freely available R software package PROPER.
215 tualFlow, we prepared one of the largest and
freely available ready-to-dock ligand libraries, with mo
216 inder has been implemented into a web-based,
freely available resource associated with novel, easy to
217 The ChemNetDB is a
freely available resource for systems analysis of motor,
218 lications into the Sedeen viewer to create a
freely available resource for the digital pathology and
219 ata within the CTD to provide a centralized,
freely available resource that facilitates identificatio
220 he Adult Changes in Thought (ACT) study as a
freely-available resource.
221 Our
freely available single cell transcriptional atlas will
222 atile combination of imaging modalities with
freely available software and protocols may open up comp
223 Currently, there are no
freely available software applications that allow simula
224 ement of MCCL (planimetric estimation) using
freely available software by the same two experts.
225 LIQUID was compared to other
freely available software commonly used to identify lipi
226 ic AFM equipment and skills and only needing
freely available software for data analysis.
227 SCIFIO is a
freely available software library developed to standardi
228 Freely available software makes the assessment procedure
229 We describe key quality metrics, provide a
freely available software package to compute them, and d
230 ers on cine images in end systole by using a
freely available software package.
231 There are many commercial and
freely available software packages for SEM.
232 A handful of commercial and
freely available software programs exist for fragment an
233 An interactive and
freely available software tool was developed to allow co
234 tensive in silico fragmentation libraries of
freely available software.
235 , and the analysis is simple to perform with
freely available software.
236 Our network biology platform includes
freely available source code for researchers to explore
237 dily be reduced by phytoplankton, provides a
freely available source of sulfur for biomolecule synthe
238 Census is
freely available through our updated single-cell analysi
239 gkmSVM package is
freely available through the Comprehensive R Archive Net
240 have collected and the phenotypes scored are
freely available through the project website.
241 All of the tools are
freely available through the public website and many are
242 The data are
freely available to accessors either as single files or
243 v2.0 has an intuitive user interface and is
freely available to all users without any login requirem
244 The server is
freely available to all users without restriction.
245 r for the global PDB archive, makes PDB data
freely available to all users, from structural biologist
246 can be customized to user preferences and is
freely available to download.
247 We have made VTEA
freely available to interested investigators via electro
248 NMRbox is
freely available to not-for-profit users.
249 The JCI has made all of its research
freely available to readers since 1996.
250 The AGRP is
freely available to researchers through an imputation se
251 , editing constructs, and mutant strains are
freely available to researchers to investigate the roles
252 biology of HGSC, and the ID8 cell lines are
freely available to researchers.
253 We have made these experimental resources
freely available to the academic community worldwide.
254 We made the DeepBrainNet model
freely available to the community for MRI-based evaluati
255 Zmine 2 followed by a homemade Python script
freely available to the community that clears the major
256 atabase for biomedical research that is made
freely available to the community.
257 iCn3D is
freely available to the public.
258 This tool is
freely available to the research community and can be us
259 ed craniofacial development in FaceBase, all
freely available to the research community on the FaceBa
260 BubbleTree is R-based and
freely available to the research community.
261 Our code is released open source and
freely available to the scientific community.
262 SOS is
freely available to use at sites.google.com/view/statbio
263 For millennia, seeds have been
freely available to use for farming and plant breeding w
264 st-associated filtering in a non-commercial,
freely available tool in a local, interactive and easy-t
265 The result, PWHATSHAP, is a
freely available toolkit that improves the efficiency of
266 Freely available tools addressing this issue require adv
267 However, current
freely available tools for analyzing this data are geare
268 Here, we combined 11
freely available tools into a meta-predictor (meieringla
269 No
freely available tools provide straightforward approache
270 Based on widely used and
freely available tools, we have developed Gimpute, an au
271 Its implementation is
freely available under a 2-clause BSD license, with bind
272 It is
freely available under a 2-clause BSD license, with bind
273 The package is
freely available under a public license through the Comp
274 with detailed instructions and examples, is
freely available under the GPL (> = 2) license from the
275 BioJava requires Java 8 or higher and is
freely available under the LGPL 2.1 license.
276 The package is also
freely available under the LGPL license from the Biocond
277 BioStructures.jl is
freely available under the MIT license.
278 Squiggle is written in Python 3 and
freely available under the permissive MIT license.
279 iLearn is made
freely available via an online web server and a stand-al
280 tion is available online, and source code is
freely available via GitHub.
281 ProGeM is
freely available via GitHub.
282 endencies as a pre-configured system, and is
freely available via the installation instructions provi
283 BISQUE is
freely available via the web using any major web browser
284 All data are
freely available via the website and the GitHub reposito
285 The benchmark data and software are
freely available via two R/Bioconductor packages, miRcom
286 m BRM can easily and directly be uploaded to
freely available visualization tools for further analysi
287 CS library for IMS-HRMS, which is online and
freely available,
was developed for 556 OMPs in both pos
288 Here, we present ProteoSign, a
freely available web application, dedicated in allowing
289 bution matrix can easily be computed using a
freely available web application.
290 We also provide a
freely available web interface (search.cancervariants.or
291 ADME SARfari is a
freely available web resource that enables comparative a
292 o acid composition algorithm, we developed a
freely available web server, called PseKRAAC (the pseudo
293 (SImple Manager for Bacterial Assemblies), a
freely available web tool that integrates several compon
294 Our
freely available web-based calculator, FluxFix, quickly
295 ion and its comorbidities, we have created a
freely-available web-resource for prediction of relevant
296 package and online server of ResPRE are made
freely available,
which should bring important impact on
297 ive kinase inhibitors that was recently made
freely available with the aim of expanding research in t
298 fication, provided example submission and is
freely available without any registration requirement.
299 All data in BioGRID is made
freely available without restriction, is directly downlo
300 PrimerMapper is hosted at GitHub and
freely available without restriction.