ライフサイエンスコーパス: gene order

1 e four genomes, and are situated in the same gene order.

2 ferent isolates and in terms of sequence and gene order.

3 ved (>93%) with respect to both sequence and gene order.

4 genes independent of IGD and conservation of gene order.

5 ysis and/or combinations of gene content and gene order.

6 otation and a novel formulation of conserved gene order.

7 vealed large- and small-scale differences in gene order.

8 meiotic mapping, but it produces the correct gene order.

9 s several ways of visualizing information on gene order.

10 and conserve their intergenic distances and gene order.

11 lies and in fostering large-scale changes in gene order.

12 f orthologs and can result in convergence in gene order.

13 l genomes), based on the similarity of their gene order.

14 ted by phylogenies based on gene content and gene order.

15 ncestor, but with considerable scrambling of gene order.

16 ar in nucleotide sequence, gene function and gene order.

17 n of the evolution of non-tRNA mitochondrial gene order.

18 family, to establish a synteny-based linear gene order.

19 um raimondii (DD) genomes revealed conserved gene order.

20 entified many small disruptions to conserved gene order.

21 s remains equivocal in analyses of conserved gene order.

22 116 kb and displays no unique alterations in gene order.

23 nomes have nearly identical gene content and gene order.

24 signed to help identify regions of conserved gene order.

25 the fixed rearrangement events that disrupt gene order.

26 d within a 450-kb region on R9 with the same gene order.

27 work, we generated viruses having rearranged gene orders.

28 numbers, and protein isotypes and (b) their gene orders.

29 c tree reconstruction and deriving ancestral gene orders.

30 er the genome phylogeny as well as ancestral gene orders.

31 en reorganized with respect to the ancestral gene order (a similar order that is ancestral in seed pl

32 kably, this conservation extends not only to gene order across 16 genes, but also to the position and

33 y browser explores the conservation of local gene order across deuterostome.

34 ene dynamics that are hidden at the level of gene order alone.

35 f synteny, we found substantial shuffling of gene order along corresponding chromosome arms.

36 cies, we lack basic information, such as the gene order along the chromosome.

37 that ECA22 shares remarkable conservation of gene order along the entire length of dog chromosome 24,

38 mosome maps shows remarkable conservation of gene order along the entire span of the chromosomes, inc

39 Comparative gene orders along paleo-homoeologous chromosomal segment

40 ervation of gene content, genic feature, and gene order although discordances in synteny were observe

41 The gene order, although unique amongst Metazoa, shared the

42 hora, which displays a conserved chromosomal gene order among asterid angiosperms.

43 nal stability, as evidenced by the conserved gene order among bryophytes and lycophytes, whereas fern

44 Type I genes were binned for comparison of gene order among cattle, humans, and mice.

45 tial functional relationships, and conserved gene order among cereals can then be used to ascribe fun

46 The conservation of gene order among prokaryotic genomes can provide valuabl

47 ed macroevolutionary shifts in mitochondrial gene order among the freshwater mussels (Unionoidea).

48 e color coded to assist users with analyzing gene order among various genomes.

49 ere is little conservation of mitochrondrial gene order amongst the Mollusca and suggests that radica

50 Gene order analyses around N. castellii centromeres indi

51 MLGO (Maximum Likelihood for Gene-Order Analysis) is a web tool for the reconstructio

52 lso other forces that determine evolution of gene order and arrangement.

53 ription of the genes is mainly controlled by gene order and cis-acting signals found at the gene bord

54 The relative contributions of globin gene order and competition among subunits due to differe

55 Gene order and content of the ctvm interval are best ext

56 The gene order and content of these individual Arabidopsis s

57 Although Relicanthus shares the same gene order and content with other available actiniarian

58 n genome exhibited a general conservation of gene order and content with the previously sequenced C.t

59 high degree of evolutionary conservation of gene order and content, which differs only by insertion

60 erence genome, limiting our understanding of gene order and content.

61 ge maps constructed from genetic analysis of gene order and crossover frequency provide few clues to

62 o about one-third of the sorghum genome with gene order and density similar to those of rice.

63 -type chromosomes, we inferred the ancestral gene order and derived chromosomal arrangements in this

64 Gene order and direction of transcription is the same in

65 Characteristics of the region such as gene order and frequency of recombination appear to be c

66 We identified 26 putative operons with gene order and function conserved among two species of G

67 The assembly reconstructs gene order and has 99.5% nucleotide identity.

68 Gene order and homology are conserved between the specie

69 (ANT32C12) revealed moderate conservation in gene order and identity, compared with a previously repo

70 o human 15q11-q13, with conservation of both gene order and imprinted features.

71 onella enterica serovar Typhimurium, both in gene order and in conservation of the deduced amino acid

72 e architecture results in the maintenance of gene order and in the lack of high-frequency DNA inversi

73 shared genes, which are usually conserved in gene order and location relative to rice (Oryza sativa),

74 Small-scale changes in gene order and orientation are common in plant genomes,

75 Gene order and orientation in the H. rubra mitochondrial

76 Although the gene order and orientation were similar to those found i

77 of genomic rearrangements that impact local gene order and orientation.

78 s and mice, including 19 genes with the same gene order and orientation.

79 ent tolerance of S. cerevisiae to changes in gene order and overall chromosome structure.

80 find that the overall genomic organization, gene order and predicted proteomes (sets of proteins enc

81 nt to know the position of the colour locus, gene order and recombination landscape of the chromosome

82 nes and provide evidence for co-evolution of gene order and recombination rate.

83 Differences in gene order and relative recombination were the least bet

84 cs by removing or recoding genes, scrambling gene order and replacing all non-coding DNA with synthet

85 red initially, followed by extreme stasis in gene order and slow decay of additional genes.

86 Using human gene order and spacing as a model, these probes were use

87 boundary is shared between the L. saxatilis gene order and that of the pulmonate gastropod Cepaea ne

88 genes of interest, significant variations in gene order and the degree of clustering were uncovered b

89 at show the positions of break-points in the gene order and use colour to highlight the sections of t

90 W83 and W84 share similar gene orders and code for similar replicative, structural

91 perspective in identifying ancestral amniote gene orders and in reconstructing patterns of vertebrate

92 e two windows), (2) the same composition and gene order, and (3) the same composition, gene order, an

93 of a deeper understanding of gene function, gene order, and chromosome structure through the de novo

94 Chloroplast genome organization, gene order, and content are highly conserved among land

95 e received recent support from mitochondrial gene order, and eye and brain ultrastructure and neuroge

96 nd gene order, and (3) the same composition, gene order, and gene orientation.

97 The mechanistic consequences of linear gene order, and how it may relate to the functional outp

98 ven by divergent promoters, rearranged their gene order, and probed their expressions using time-laps

99 e assumptions, such as exact conservation of gene order, and relied on heuristic algorithms.

100 t of a comparative genomic study of synteny, gene order, and sequence conservation between A. funestu

101 pendent upon the extent to which synteny and gene order are conserved between the two species.

102 to and tomato confirm that gene sequence and gene order are conserved between these solanaceous speci

103 Because small-scale changes in gene order are relatively common in some taxa, comparati

104 ere is considerable conservation of synteny, gene orders are not well conserved between Fugu and huma

105 enetic characters including an assessment of gene order arrangement.

106 plications for the use of mitochondrial tRNA gene orders as phylogenetic markers.

107 ollowed by whole-genome phylogenies based on gene order, average ortholog similarity or gene content.

108 Gene-order-based comparison of multiple genomes provides

109 help to recognize this homoplasy, improving gene-order-based phylogenetic hypotheses and underscorin

110 Conserved gene order between CFA29 and the long arm of human chrom

111 genes places them within a region of shared gene order between human and mouse chromosomes on human

112 are large blocks of conserved syntenies, the gene order between human and zebrafish is extensively in

113 In particular, the gene order between mtDNAs of the hornwort and Physcomitr

114 nferred number of fragments and variation in gene order between species is much greater within Cerian

115 ve DNA, and there is minimal collinearity in gene order between strains.

116 Conservation of gene order between T. maritima and Archaea in many of th

117 otation and graphical reports of synteny and gene order between the Fugu genome and human genes.

118 This article reports on the comparison of gene order between these 12 species and on the fixed rea

119 locations are necessary to produce identical gene orders between L. saxatilis and K. tunicata.

120 Comparisons of gene orders between species permit estimation of the rat

121 enced, and delivered >1000 mutations in >100 genes ordered by Arabidopsis researchers.

122 Compared to a recovered ancestral gene order, CFA9 has undergone 11 reversals of <3 Mb and

123 so provides an additional mechanism by which gene order changes can occur within mtDNA: through the c

124 Although gene order changes much faster than protein sequences du

125 ng events can lead to new interpretations of gene order changes, as well as the discovery of phylogen

126 nd two introns (clpP and rps12) and numerous gene order changes, attributable to 14-18 inversions.

127 ological, developmental, ultrastructural and gene-order characters.

128 Gene order closely matches that found in primates (inclu

129 ilds on the straightforward observation that gene order conservation ('synteny') decreases in time as

130 This degree of gene order conservation across evolutionarily distantly

131 The level of gene order conservation among prokaryotic genomes was co

132 Both gene order conservation and breakpoint reuse can result

133 Examination of gene order conservation revealed a core gene cluster of

134 Gene order conservation shows a much lower variance than

135 teins, respectively, but no chromosome-level gene order conservation was detected.

136 f genome rearrangements, measured as loss of gene order conservation with time, are higher in radiati

137 ogenetic profiles, functional categories and gene-order conservation in their operon prediction.

138 nalysis to mouse chromosome 4 in a region of gene order conserved with human chromosome 9q31.

139 s, respectively, which allowed estimation of gene order consistent with that predicted from the Col-0

140 The inferred Gossypium gene order corresponded more closely than the original m

141 ural rearrangement has been rapid (obscuring gene order correspondence) have also been subject to gre

142 e rare relative to nucleotide substitutions, gene order data offer the possibility of resolving ancie

143 ches in the tree of life; the combination of gene order data with sequence data also has the potentia

144 Thus, reconstruction based on gene-order data can now be accomplished with high accura

145 a has renewed interest in the study of using gene-order data for phylogenetic analyses and ancestral

146 Phylogenetic reconstruction from gene-order data has attracted increasing attention from

147 n of phylogeny and/or ancestral genomes from gene-order data.

148 morphogenesis genes have retained canonical gene order despite extreme sequence divergence, genes in

149 nt from their parental species in karyotype; gene order differences were observed for between 9 and 1

150 cluster of 11 orthologs of the hemichordate genes, ordered differently, plausibly reflecting rearran

151 MHC gene organization (size, complexity, gene order) differs markedly among different species, an

152 s, while demonstrating general similarity of gene order, display a number of examples of genomic rear

153 addition, the genomes differ considerably in gene order, displaying displacements and inversions.

154 , and has been used to produce inter-genomic gene order dot-plots for Haemophilus influenzae versus H

155 result from immobilization of the ancestral gene order due to the lack of a mechanism for homologous

156 ads to improved understanding of comparative gene orders, enhancing the value of data from botanical

157 demonstrate that purely neutralist models of gene order evolution are not realistic.

158 Gene order evolution in two eukaryotes was studied by co

159 tions for gene therapy and for understanding gene order evolution, suggesting that chromosomal proxim

160 We show that, although there has been little gene order evolution, there are substantial differences

161 a chloroplast genome possesses the bryophyte gene order for a previously characterized 30 kb inversio

162 , Lotus, and Medicago differs from the usual gene order for angiosperm chloroplast genomes by the pre

163 We also show that an inferred ancestral gene order for Arabidopsis reveals more synteny with oth

164 In addition, our study refines the gene order for distal mouse chromosome 19 and expands th

165 sive homology, with complete conservation of gene order for loci in common between the two maps.

166 of mosses, liverworts, and hornworts than to gene order for other vascular plants.

167 the limitations of low degrees of conserved gene order for the reference and target genomes.

168 ecies, as well as ancestral gene content and gene order for vertebrates and flowering plants.

169 produces a relationally linked model of the gene ordering for the genome.

170 Gene order from centromere to telomere is IL1A-IL1B-IL1F

171 by the positions of the N and G genes in the gene order: G3N4, G1N4, and G1N2.

172 luster architectures by varying part choice, gene order, gene orientation and operon occupancy.

173 a local similarity search heuristic to study gene order, generating homology hits for the genomic arr

174 This resulted in a cyclic permutation of gene order going from phage to prophage.

175 the same chromosome arm, but within each arm gene order has been extensively reshuffled, leading to a

176 Both gene orders have persisted within these clades for ~200

177 a more conserved region because of preserved gene order in a larger number of and more diverse specie

178 ing genes in one anopheline species based on gene order in another may be limited to closely related

179 the photosynthesis region revealed a similar gene order in both species with some notable differences

180 Accumulating evidence indicates that gene order in eukaryotic genomes is not completely rando

181 To test the role of gene order in globin gene expression, mutant human beta-

182 Gene order in Glycine, Lotus, and Medicago differs from

183 lication is the primary driver of non-random gene order in mammalian genomes.

184 nservation of gross chromosome structure and gene order in mammals.

185 on at OriH may be responsible for changes in gene order in octocorals and hexacorals, respectively.

186 In contrast to the gene order in other colicin operons, the cjl gene was fo

187 Gene order in prokaryotes is conserved to a much lesser

188 ay be expected to result in a more conserved gene order in radiation-resistant species.

189 The gene order in the 5kb Mycobacterium tuberculosis dnaA re

190 By comparing the gene order in the completely sequenced archaeal genomes

191 The gene order in the complex and two new mouse genes, Adh5a

192 ns, thereby contributing to the shuffling of gene order in the D. pseudoobscura lineage.

193 In contrast, we found evidence of altered gene order in the several strains that were examined and

194 The gene order in these two syllids does not follow the orde

195 Gene order in this complex is similar, but not identical

196 The gene composition and gene order in this neighborhood vary greatly between spe

197 The gene order in this region is not perfectly conserved bet

198 Conservation of gene order in vertebrates is evident after hundreds of m

199 (Ig switch region [S] inversions and unusual gene orders in composite S regions).

200 M) is a tool for analyzing rearrangements of gene orders in pairs of unichromosomal and multichromoso

201 Reconstructing ancestral gene orders in the presence of duplications is important

202 rent chromosomal locations and with distinct gene orders in these closely related species.

203 software tool that combines gene content and gene order information of homologous genomic segments in

204 Finding genomic distance based on gene order is a classic problem in genome rearrangements

205 For mononegaviruses, the gene order is a major factor controlling the level of mR

206 The gene order is completely different from the pattern in a

207 Gene order is conserved on the autosomes, but noticeably

208 nsects, although conservation of orthologous gene order is higher (by a factor of approximately 2) be

209 The gene order is identical to that reported for most caride

210 generally been assumed to be neutral, since gene order is largely scrambled over evolutionary time.

211 The pylTSBCD gene order is maintained not only in methanogenic Archae

212 Gene order is more similar to those of mosses, liverwort

213 there is increasing evidence that eukaryotic gene order is not always random, there is no evidence th

214 m by the MAP17 gene in both species, but the gene order is not collinear downstream from MAP17.

215 nts compared to the chicken, suggesting that gene order is not conserved within avian chromosomes.

216 creasing evidence in eukaryotic genomes that gene order is not random, even allowing for tandem dupli

217 In many eukaryotic species, gene order is not random.

218 re able to identify several regions in which gene order is preserved, they are relatively small, and

219 smaller percentages of genes, and conserved gene order is restricted to short blocks.

220 y related taxa and determined that the novel gene order is restricted to the deep-sea subfamily Kerat

221 Gene order is substantially different between these two

222 ome replication and expression, although the gene order is substantially different from that in other

223 This gene order is syntenic with the vernalization1 locus res

224 rom the LCR, an inherent property of spatial gene order, is a major determinant of temporal gene expr

225 tructural genes are related at a protein and gene order level to P22.

226 pose of comparing genome organization at the gene-order level.

227 is does not preclude that tracts of colinear gene orders may be identified using sequence comparisons

228 arrangement in the female mitogenome (i.e., gene orders MF1 and UF1).

229 An overview of mitochondrial gene orders (MGOs) reveals a high level of genomic varia

230 Here, we established a virtual linear gene order model (genome zipper) comprising 22,426 or 72

231 mutY is the first gene in an operon with the gene order mutY, yggX, mltC, and nupG.

232 indings suggest that the conservation of the gene order observed among the Mononegavirales may result

233 We have also determined the gene order of all V(H)7183 genes in a bacterial artifici

234 within the genome relative to the ancestral gene order of angiosperm chloroplast genomes.

235 Sequence analysis showed a gene order of atpEBFHAGDC and that a large intergenic sp

236 specific back-cross involving BN: supports a gene order of cen-DXMit89-18.5 +/- 2.3 cM-DXMit166-1.4 +

237 bserve protein structural constraints on the gene order of fusion that impact the potential for fusio

238 A gene order of Ly49q(1), e, (v, q(2)), e/c(2), l/r, s, t,

239 MBD1 and MBD2 bracket the DCC locus giving a gene order of MBD1/CGBP-DCC 5'-DCC 3'-MBD2.

240 ial genome of P. opilio is compared with the gene order of taxa from all seven other orders of arachn

241 ome, enabled the construction of the virtual gene order of the chromosome, and facilitated detailed c

242 data show that despite the highly conserved gene order of the Mononegavirales, gene rearrangement is

243 rthropods, and further clarify the ancestral gene order of this diverse group of arthropods.

244 Gene order of three mitogenomes is highly conserved and

245 the Arabidopsis thaliana sequence to partial gene orders of other angiosperms (flowering plants) shar

246 mate that 6116 breakpoints differentiate the gene orders of the species and that breakpoint reuse is

247 Compared to other annelids, gene orders of these three mitochondrial genomes are gen

248 enic groups were apparent upon comparison of gene order on BTA5 and HSA12 and HSA22.

249 The present gene order on the human X also requires two inversions.

250 tates the inference of animal phylogeny from gene orders on the mitochondrial genome.

251 We have compared gene orders on three chromosomes of Drosophila pseudoobs

252 uch as short perfect conservation, conserved gene order or monophyletic gene clusters.

253 combinatorial assembly with randomization of gene order or ribosome binding site strength; and (iii)

254 A comprehensive analysis of relative gene order, or microsynteny, can provide valuable inform

255 served syntenic architecture with respect to gene order, orientation, and association with other gene

256 defined the borders of six proteins with the gene order p38.3 (Nterm)-p39.6 (NTPase)-p18.6-p14.3 (VPg

257 l maps did to a similarly inferred ancestral gene order predating an independent paleopolyploidizatio

258 a synteny-level reconstruction to break the gene-order problem into several subproblems, which are t

259 el dicistronic poliovirus replicons with the gene order [PV]cloverleaf-[HCV]IRES-Deltacore-R-Luc-[PV]

260 osynthetic operon in M. catarrhalis with the gene order pyrG-kdsA-eno.

261 g is the terminal gene in an operon with the gene order radC, rpmB, rpmG, and fpg.

262 nome duplications, insertions, deletions and gene order rearrangements.

263 The gene order relates to the evolutionary relationship betw

264 The maintenance of gene order relationships between chromosomal segments th

265 The gene order, relative region size, and recombination are

266 Gene-order scrambling between species is in accordance w

267 ading frames that are found in the conserved gene order secY (SecY)-adk (Adk)-rpsM (S13)-rpsK (S11)-r

268 t MHC class II region was constructed with a gene order similar to, but distinct from, that of human

269 arative genomic data on the gene content and gene order similarity between archaeal genomes.

270 hromosomal banding, chromosome painting, and gene-order studies have shown strong conservation of gro

271 d to be consistent with regions of conserved gene order (synteny blocks).

272 objective criteria of a high degree of local gene order (synteny) and a small number of synonymous su

273 The conserved gene order (synteny) revealed by heterospecific SNP maps

274 ger than the L. pneumophila genome and has a gene order that is different from that of the L. pneumop

275 Because of the rapid evolution of the gene order, the potential of genome alignment for predic

276 ction by recombinants is influenced by Ad L5 gene order, the specific mRNA processing signals associa

277 , and eggplant share not only genes but also gene order thereby permitting highly informative compara

278 of the Norwalk virus genome is analogous in gene order to proteins 2A and 2B of the picornaviruses;

279 cus server also provides access to ancestral gene orders, to facilitate evolutionary and comparative

280 hin Gonideinae, two additional splits in the gene order (UF1 to UF2, UF2 to UF3) occurred in the Meso

281 Strong conservation of gene order was demonstrated in the short arm of the X ch

282 s and a highly conserved collinearity in the gene order was observed among the three genomes.

283 rict colinearity was rarely observed because gene order was regularly disrupted by Bodo-specific gene

284 The gene order was: cox1, cox2, trnK, trnD, atp8, atp6, cox3

285 all tested isolates, and their sequences and gene order were conserved.

286 recombination heterogeneity and variation in gene order were observed among single-pair crosses for e

287 Variations in genome size and gene order were observed in archival Salmonella enterica

288 between zebrafish and humans were large, but gene orders were frequently inverted and transposed.

289 The central three genes in the gene order, which encode the phosphoprotein P, the matri

290 is reveals significant local conservation of gene order, which has not been seen in comparisons of ot

291 are colinear, there is a 35-kb inversion in gene order, which is close to the replication terminus,

292 imately 135-155 kb) of synteny and conserved gene order, which may contain all of the elements requir

293 c method, MULTIRES, to reconstruct ancestral gene orders with duplications guided by homologous synte

294 a basic toolbox for reconstructing ancestral gene orders with duplications.

295 s of the Arabidopsis genome, conservation of gene orders with rice has been eroded to the point that

296 poplar and peach, showed areas of conserved gene order, with overall synteny strongest with coffee.

297 enies are quite large, there were changes in gene order within conserved groups, apparently reflectin

298 Mitochondrial gene order within Decemunciger was similar to the three

299 govern the evolution of gene complement and gene order, without the need to invoke long-range conser

300 from its fourth position up to first in the gene order would increase G protein expression in cells