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3 ed and characterized two new (4-quinolinoyl)-glycyl-2-cyanopyrrolidine-based small molecules for imag
4 a new DPP-IV inhibitor class, N-substituted-glycyl-2-cyanopyrrolidines, are described as well as the
5 pha-subunit in the complex with an analog of glycyl adenylate at 2.8 A resolution presents a conforma
7 The mutation is at the site for synthesis of glycyl-adenylate, but the rest of the two structures are
8 ine (gly-gly), alalyl-alanine (ala-ala), and glycyl-alanine (gly-ala) show that upon photoexcitation
9 alyzes the stereospecific hydroxylation of a glycyl alpha-carbon in a reaction that requires O(2) and
10 aminolyzes acyclic D-alanyl substrates than glycyl analogues, in contrast to the wild-type beta-lact
12 ntained a constant acyl group, (phenylacetyl)glycyl, and chemically different leaving groups, m-carbo
13 Active-site labeling with dansyl-glutamyl-glycyl-arginyl chloromethyl ketone or immunoblot analysi
14 he adhesion of H10 cells to vitronectin and (glycyl-arginyl-glycyl-aspartyl-serine)4 and significant
15 y higher rates to the polymeric RGD peptide (glycyl-arginyl-glycyl-aspartyl-serine)4 than to monomeri
17 s significantly increases their RGD (arginyl-glycyl-aspartate)-dependent interaction with endothelial
18 o 142 of the pre-pro-protein form an arginyl-glycyl-aspartic (RGD) sequence, a motif involved in the
20 DF4(C16)) tagged with the tripeptide arginyl-glycyl-aspartic acid cell adhesion motif RGD, which can
21 [c(RGDfk)](2) = glutamic acid-[cyclo(arginyl-glycyl-aspartic acid-D-phenylalanine-lysine)], both in s
22 H10 cells to vitronectin and (glycyl-arginyl-glycyl-aspartyl-serine)4 and significant inhibition of t
23 to the polymeric RGD peptide (glycyl-arginyl-glycyl-aspartyl-serine)4 than to monomeric RGD peptides.
24 measurements indicate that the peptidoglycan glycyl bridges are complete (five units long) and form c
25 glyoxylate and the oxidative cleavage of the glycyl Calpha-N bond in N-benzoylglycine (hippurate) by
26 tivity induces ribosome stalling at all four glycyl codons but does not evoke a stringent response.
27 singly, the yields are lower (< 50%) for non-glycyl couplings due to an aza-Wittig reaction that dive
28 the variant with a C-terminal glycyl-glycyl-glycyl-cysteine peptide-based chelator (designated ZHER2
29 tate by the aminolysis product (phenylacetyl)glycyl-D-phenylalanine indicated that the second binding
30 D-alanyl-D-phenylalanine and N-(phenylacetyl)glycyl-D-phenylalanine were used as a test pair against
31 nhibiton of the hydrolysis of (phenylacetyl)-glycyl-D-thiolactate by the aminolysis product (phenylac
32 , RGD-hirudin, and Nalpha-2-naphthylsulfonyl-glycyl-DL-4-amidinophenylalanyl-piperidide acetate salt
33 dyl (Jo-1), threonyl (PL-7), alanyl (PL-12), glycyl (EJ), and isoleucyl (OJ), are closely associated
35 11(Delta181-381), revealed that the D-alanyl-glycyl endopeptidase activity is contained within the N-
36 ults show that the phi11 enzyme has D-alanyl-glycyl endopeptidase as well as N-acetylmuramyl-L-alanyl
37 O4) precipitation was applied to fractionate glycyl endopeptidase from the papaya latex of Red Lady a
39 us cysteine proteases papain, actinidin, and glycyl endopeptidase, folding into two distinct domains
40 rolytic activity toward valacyclovir, the 5'-glycyl ester of acyclovir, and the 5'-valyl ester of zid
41 ered proteins (IDPs) containing phenylalanyl-glycyl (FG)-rich repeats line the pore and interact with
42 ged to arginyl-alanyl-aspartic or to arginyl-glycyl-glutamic, were expressed in Escherichia coli.
49 mor activities of these compounds and their [glycyl,glutamyl] diethyl ester prodrug forms (1(Et)2-3(E
52 , N(alpha)-acetyl lysine amide, and N(alpha)-glycyl glycine amide are investigated by combined densit
53 y photodynamics of the aqueous dipeptides of glycyl-glycine (gly-gly), alalyl-alanine (ala-ala), and
54 ntified based on the inability to use prolyl-glycyl-glycine as a proline source and were defective in
57 is removed by treatment with lysostaphin, a glycyl-glycine endopeptidase that separates the cell wal
58 e show that while lysostaphin is genuinely a glycyl-glycine hydrolase, LytM can also act as a D-alany
59 ny of these M23 family members can hydrolyse glycyl-glycine peptide bonds and show lytic activity aga
60 ine, L-alanyl-glycine, glycyl-L-alanine, and glycyl-glycine, in which we attempt to isolate structura
61 shown to catalyze the prebiotic synthesis of glycyl-glycine, we expect this work will stimulate furth
62 t is a competitive inhibitor of the acceptor glycyl-glycine, which indicates that OU749 occupies the
64 onstrated that the variant with a C-terminal glycyl-glycyl-glycyl-cysteine peptide-based chelator (de
65 drug-like inhibitors, such as TGX-221, and S-Glycyl-H-1152 span both the L-Histidine and AdoMet bindi
71 thetase (HisRS) or to alanyl-, asparaginyl-, glycyl-, isoleucyl-, or threonyl-tRNA synthetase occur i
73 ain glycyl-l(but not d)-amino acids, such as glycyl-l-alanine and glycyl-l-phenylalanine, are also go
74 tides, L-alanyl-L-alanine, L-alanyl-glycine, glycyl-L-alanine, and glycyl-glycine, in which we attemp
77 y complexed with a highly specific fragment (glycyl-L-alpha-amino-epsilon-pimelyl-D-Ala-D-Ala) of the
78 , where the enzyme catalyzes transfer of the glycyl-l-alpha-amino-epsilon-pimelyl-d-alanyl moiety to
79 , a peptidoglycan-mimetic peptide substrate, glycyl-l-alpha-amino-epsilon-pimelyl-d-alanyl-d-alanine,
80 hown that the peptidoglycan-mimetic peptide, glycyl-l-alpha-amino-epsilon-pimelyl-d-alanyl-d-alanine,
81 f the Streptomyces R61 dd-peptidase, such as glycyl-L-alpha-amino-epsilon-pimelyl-D-alanyl-D-alanine,
82 peptidase substrate yielded a new substrate, glycyl-L-alpha-amino-epsilon-pimelyl-D-alanyl-D-alanine.
84 es of protonated and alkali metal-cationized glycyl-L-arginine (GlyArg) and L-arginylglycine (ArgGly)
85 c cerebral arteries via binding to L-arginyl-glycyl-L-aspartate-dependent integrin receptors and prev
86 n of an analogous thiolester substrate, 3-(N-glycyl-l-cysteinyl)-propanoyl-d-alanyl-d-thiolactate, th
87 ed by studying the response to the substrate glycyl-L-glutamine (Gly-Gln) of the proton-coupled pepti
89 moiety was investigated employing N-benzoyl-glycyl-L-lysine (Bz-Gly-Lys) as a model compound of Lys
90 carboxyethyl) -alpha-(S)-(4-phenyl-3-butynyl)glycyl-L-O-methyltyrosine, N-methylamide), a potent inhi
94 -glycine cross-linking/covalent labeling and glycyl-l-proline cross-linking/covalent labeling with to
95 e by AsPc-1 and Capan-2 cells was similar to glycyl-L-sarcosine absorption by Caco-2 cells and a Chin
97 -3-((13-methyltetradecanoyl)oxy)hexadecanoyl)glycyl-l-serine, abbreviated as l-serine-(R+S)-Lipid 654
98 ential UV-Vis spectroscopy, and bioassays, L-glycyl-L-tryptophan (Gly-Trp) was found to be the only d
99 y titrating a mixture of model fluorophores, glycyl-L-tryptophan and L-tryptophan with Cu2+ at pH 6.
100 I molecules, and we find that the dipeptide glycyl-leucine efficiently supports the folding of HLA-A
103 ent of (1)H/(2)H exchange into methionine, N-glycyl-methionine, and methionine sulfoxide suggests tha
105 AIPPMER), 18-O-[N-(3'-iodo-4'-azidophenethyl)glycyl]methyl reserpate (IAPEGlyMER), and 2-N-[(3'-iodo-
109 s between hypoxanthine and all standard, non-glycyl/non-prolyl amino acid side chain analogs as deriv
110 de investigated has either a central pyridyl glycyl or a pyridyl alanyl residue between two terminall
111 th one substrate, however, m-[[(phenylacetyl)glycyl]oxy]benzoic acid, isotope effects on V/K of very
112 a depsipeptide substrate, m-[[(phenylacetyl)glycyl]-oxy]benzoic acid, and of a beta-lactam substrate
113 pounds using electronic tongue assay; leucyl-glycyl-proline exhibited synergism with monosodium gluta
114 ated with a mixture containing the dipeptide glycyl-proline in Tris-HCl supplemented with manganese a
115 ermined by the complete disappearance of the glycyl-proline peak with the concomitant appearance of t
117 acid, trigonelline, alanyl-tyrosine, leucyl-glycyl-proline, and leucyl-aspartyl-glutamine) and three
118 activity of the chromogenic substrate tosyl-glycyl-prolyl-argly-4-nitroanilide acetate was present a
120 ass III ribonucleotide reductases (RNRs) are glycyl radical (G*) enzymes that provide the balanced po
122 e PFL contains a novel alpha-carbon centered glycyl radical at G734 that is required for its catalyti
124 radical enzyme (GRE) superfamily utilizes a glycyl radical cofactor to catalyze difficult chemical r
127 tivity regulation in anaerobic or class III (glycyl radical containing) RNRs, we determine cryo-elect
128 benzylsuccinate synthase complex lacking the glycyl radical could be purified as an alpha(2)beta(2)ga
130 copri NrdD is active and has a fully ordered glycyl radical domain (GRD) in one monomer of the dimer.
132 alphagamma complex center around the crucial glycyl radical domain, thus suggesting a role for BSSbet
133 activity, as evidenced by the characteristic glycyl radical electron paramagnetic resonance signal ob
134 nzymes, including the evolutionarily ancient glycyl radical enzyme (GRE) family, catalyze chemically
137 imethylamine-lyase is an anaerobic bacterial glycyl radical enzyme (GRE) that cleaves choline to prod
139 acetaldehyde by a previously uncharacterized glycyl radical enzyme (GRE), isethionate sulfite-lyase (
140 s, we investigate the catalytic cycle of the glycyl radical enzyme 4-hydroxyphenylacetate decarboxyla
142 The class III ribonucleotide reductase (RNR) glycyl radical enzyme and its corresponding RNR-AE are a
143 mental pollutant toluene is initiated by the glycyl radical enzyme benzylsuccinate synthase (BSS), wh
147 ealed the involvement of a C-N bond cleaving glycyl radical enzyme in TMA production, which is unprec
148 re, we demonstrate that the Escherichia coli glycyl radical enzyme pyruvate formate lyase (PFL), whic
149 nt (sFUT) encapsulating the oxygen-sensitive glycyl radical enzyme pyruvate formate lyase and a phosp
150 nd distribution of individual members of the glycyl radical enzyme superfamily among the microbiomes
151 e determined x-ray crystal structures of the glycyl radical enzyme that catalyzes the addition of tol
159 It is becoming increasingly apparent that glycyl radical enzymes are more prevalent than previousl
161 primarily on its sequence similarity to the glycyl radical enzymes, pyruvate formate-lyase and anaer
164 trate RVSG(734)YAV, which mimics the site of glycyl radical formation on the native substrate, pyruva
165 sed mechanism in which dioxygen quenches the glycyl radical in the active enzyme and the resulting pe
166 erminal region of YfiD is important for YfiD glycyl radical installation but not for catalysis, and t
170 cal ions, the stability of the product ions (glycyl radical ions) and the location of the charge (pro
173 e open conformation of PFL in which: (i) the glycyl radical is significantly less stable; (ii) the ac
174 obic RNRs, on the other hand, store a stable glycyl radical next to the active site and the basis for
175 for radical intermediates generated from the glycyl radical of activated pyruvate formate-lyase (PFL)
176 es that generate the catalytically essential glycyl radical of GREs, which in turn catalyze essential
178 nerates a stable and catalytically essential glycyl radical on G(734) of pyruvate formate-lyase via t
179 me (PFL-AE) involves formation of a specific glycyl radical on PFL by the PFL-AE in a reaction requir
180 onversion of the [4Fe-4S](1+) cluster to the glycyl radical on PFL; however, 3.7-fold less activation
183 aradigm, we demonstrate that generation of a glycyl radical on the B(12)-independent glycerol dehydra
184 edominantly affected by the stability of the glycyl radical product through the captodative effect, r
186 nfortunately, the extreme sensitivity of the glycyl radical to oxygen has hampered the structural and
187 -terminal region of BSSalpha that houses the glycyl radical to shift within the barrel toward an exit
188 exhibits lower catalytic activity; (iii) the glycyl radical undergoes less H/D exchange with solvent;
189 he active site of PFL and harboring a stable glycyl radical, or an open conformation, with Gly-734 mo
191 Benzylsuccinate synthase is a member of the glycyl radical-containing family of enzymes, and the rea
192 from the ethanolamine utilization (Eut) and glycyl radical-generating protein MCPs are able to targe
197 en tolerance by jettisoning enzymes that use glycyl radicals and exposed low-potential iron-sulfur cl
199 ylsuccinate synthase radical and that of the glycyl radicals of pyruvate formate-lyase and anaerobic
200 collagen degradation can occur via transient glycyl radicals, the formation of which is enhanced in A
201 the bridging segment was reduced to a single glycyl residue 1.0 +/- 0.1 (FemA), the level of cross-li
203 ngly, position 14 of h-alpha-CGRP contains a glycyl residue and is part of an alpha-helix spanning re
204 ontains an organic free radical located on a glycyl residue in the C-terminal portion of the polypept
206 lattice, the carbonyl oxygen of the central glycyl residue in two gly-gly-gly polymorphs form interm
207 physiological conditions principally when a glycyl residue is at the carboxyl side of Asn and leads
208 ar to stabilize the Rossmann fold: the first glycyl residue of either the GXXXG or GXXXA motif contac
209 incorporation of this isotope label into the glycyl residue of glutathione at 44.2 ppm can be detecte
210 glycyl residue of these motifs and the third glycyl residue of the GX(1-2)GXXG motif are the same res
211 acts the carbonyl oxygen atom from the first glycyl residue of the GX(1-2)GXXG motif consistent with
212 ither GXXXG or GXXXA motifs, where the first glycyl residue of these motifs and the third glycyl resi
214 ent hydroxylation of the alpha-carbon of the glycyl residue, producing an alpha-hydroxyglycine-extend
216 The bridging segment length changed from 5.0 glycyl residues (wild-type strain) to 2.5 +/- 0.1 (FemB)
217 hielding parameters are reported for central glycyl residues in crystallographically characterized tr
219 iction scheme for the 2 degrees structure of glycyl residues in proteins based on shielding parameter
221 ysine (for a direct measure of the number of glycyl residues in the bridging segment), [1-(13)C]glyci
222 termining step in the Staudinger ligation of glycyl residues mediated by (diphenylphosphino)methaneth
223 cross-bridges containing one, three, or five glycyl residues, but not to the epsilon-amino of lysyl i
225 he order: ryanodol > ryanodine > C(10)-O(eq)-glycyl-ryanodine > C(10)-O(eq)-beta-alanyl-ryanodol.
226 he order: ryanodol < ryanodine < C(10)-O(eq)-glycyl-ryanodine < C(10)-O(eq)-beta-alanyl-ryanodol, imp
228 L296C-, and F297C-hPepT1) showed negligible glycyl-sarcosine (gly-sar) uptake activity and may play
231 lpha-hydroxy acids act as acyl acceptors for glycyl substrates but not for more specific d-alanyl sub
238 disease-associated missense mutations in the glycyl tRNA synthetase gene in families with CMT2D and d
240 peptide bond formation between the incoming glycyl-tRNA and a nascent peptide that otherwise is cond
241 inding of CHL to a ribosome complex carrying glycyl-tRNA does not affect the positions of the reactin
243 itochondrial forms of Caenorhabditis elegans glycyl-tRNA synthetase (CeGlyRS) are encoded by the same
244 ly implicated mutations in the gene encoding glycyl-tRNA synthetase (GARS) as the cause of CMT2D and
250 ctions may explain why dominant mutations in glycyl-tRNA synthetase (GlyRS) and tyrosyl-tRNA syntheta
252 res and biochemical analyses show that human glycyl-tRNA synthetase (GlyRS) produces Ap4A by direct c
254 e gene GARS, encoding the ubiquitous enzyme, glycyl-tRNA synthetase (GlyRS), cause peripheral nerve d
255 in the housekeeping gene GARS, which encodes glycyl-tRNA synthetase (GlyRS), mediate selective periph
257 cerevisiae, two genes (GRS1 and GRS2) encode glycyl-tRNA synthetase (GlyRS1 and GlyRS2, respectively)
261 h a significant conformational transition in glycyl-tRNA synthetase coupled to the binding of GSAd.
262 of horizontal transfer of the gene encoding glycyl-tRNA synthetase from a bacterium of the Thermus-D
263 by the expression of the only known gene for glycyl-tRNA synthetase in Schizosaccharomyces pombe.
265 erential scanning calorimetry indicated that glycyl-tRNA synthetase is stabilized by nucleotides.
267 ATP and nonsubstrate ATP analogues render glycyl-tRNA synthetase more resistant to digestion by a
269 The interaction of adenine nucleotides with glycyl-tRNA synthetase was examined by several experimen
270 f the Bacillus subtilis glyQS gene (encoding glycyl-tRNA synthetase) can be reproduced in a purified
271 fferent mutant alleles of GARS (the gene for glycyl-tRNA synthetase) have been reported to cause a do
272 mutation in Aats-gly (also known as gars or glycyl-tRNA synthetase), the Drosophila melanogaster ort
273 f the Bacillus subtilis glyQS gene, encoding glycyl-tRNA synthetase, depends on stabilization of an a
281 tylates the aminoacyl moiety of isoaccepting glycyl tRNAs, thus precluding their participation in tra
283 Herein, we demonstrate that the stability of glycyl-type radicals (X-(.) CH-Y) can be tuned on a mole
284 9), sumatriptan, serotonin-5-O-carboxymethyl-glycyl -tyrosinamide (GTI), 5-methylaminosulfonylmethyl-