ライフサイエンスコーパス: hairpin loop

1 around the conserved GPGRA apex of the beta-hairpin loop.

2 l regulatory sequence (TRS) is folded into a hairpin loop.

3 lease active site in the absence of the beta hairpin loop.

4 acts occur in the signaling domains near the hairpin loop.

5 ons from a flexible stretch of residues to a hairpin loop.

6 number of interactions, such as a stable DNA hairpin loop.

7 long C-terminal extension and an N-terminal hairpin loop.

8 ibosomal protein contains a conserved UUAAGU hairpin loop.

9 easing the stacking among nucleotides in the hairpin loop.

10 tive (zinc-binding) site, including the beta-hairpin loop.

11 ing 5-iodoUMP positioned specifically in the hairpin loop.

12 the penultimate base pair than is the 5 base hairpin loop.

13 start site is at the start of this conserved hairpin loop.

14 G5 H2-A1O N7 and A10 NH6-G5 O2') closes the hairpin loop.

15 HBsAg peptide epitope revealed a stabilized hairpin loop.

16 ng from 5'-incision of an abasic site in the hairpin loop.

17 atory effect on DNA ligation during BER in a hairpin loop.

18 introducing a single-strand breakage in the hairpin loop.

19 gle-stranded regions of a bulged helix and a hairpin loop.

20 ome extent with the hinge region near the P3 hairpin loop.

21 elices connected by an intervening 8-residue hairpin loop.

22 g-Phe-Phe pharmacophores are on exposed beta-hairpin loops.

23 port even for base pairs, double helices, or hairpin loops.

24 ll experimentally determined four-nucleotide hairpin loops.

25 zing the structure and thermodynamics of RNA hairpin loops.

26 with this affinity to regular A-form RNA or hairpin loops.

27 epeats and covalently closed single-stranded hairpin loops.

28 y, as shown by the asymmetric opening of DNA hairpin loops.

29 a2 helix and the betaC-betaD and betaE-betaF hairpin loops.

30 s a common closing mismatch in ribosomal RNA hairpin loops.

31 therefore be common structural units of RNA hairpin loops.

32 three sequences joining the duplexes and two hairpin loops.

33 substrate-binding site-associated re-entrant hairpin loops.

34 tory miRNA binding and siRNA binding to mRNA hairpin loops.

35 tructural motifs such as internal, bulge and hairpin loops.

36 and template during replication and in short hairpin loops.

37 ner that depends crucially on the myotrophin hairpin loops.

38 ntial base pairing between the two predicted hairpin-loops.

39 organization, follow the order: cruciform<or=hairpin<.

40 x alpha1, or either Lys-37 or Arg-33 in beta-hairpin loop-1, impairs binding of yeast eIF1 to 40 S.eI

41 ts are a purine located at the center of the hairpin loop (-11G) and a base at the hairpin stem (-8G)

42 ts specifically with the central base of the hairpin loop (-11G) and a base at the stem (-8G) and tha

43 orters, Thr-352 and Met-362 of the reentrant hairpin loop 2 are replaced by the smaller Ala and Thr,

44 ing and transport of glutamate suggests that hairpin loop 2 not only plays a role in the selection of

45 ped by an irregular loop and forms a central hairpin (loop 3).

46 0.9 min(-1) at pH 7.8) and substrates with a hairpin-loop 3' to the cleavage site (approximately 40 m

47 U-turn candidates occur in hairpin loops (34 times) as well as in internal and mult

48 The IRE six-nucleotide hairpin loop, 5'C1A2G3U4G5N6, is conserved in sequence,

49 For certain DNA hairpin loops, a CG closing base pair has enhanced stabi

50 The CD40 fragment binds as a hairpin loop across the surface of the TRAF domain.

51 domain helices demonstrate that the N-domain hairpin loop acts as a structural mediator of the allost

52 il dimerization of two symmetry-related stem-hairpin loops, adjacent strands which are antiparallel t

53 imensional combinatorial screening approach, hairpin loops (among a variety of RNA motifs) were the p

54 hairpin complex formed between the HIV-2 TAR hairpin loop and a hairpin with a complementary loop seq

55 tion and two conserved RNA motifs, an apical hairpin loop and a loop E.

56 rent, including increased ordering of a beta-hairpin loop and a shift of the SxN active site motif su

57 ructures involving the recognition of an RNA hairpin loop and an RNA tertiary structure, reveals the

58 The hairpin loop and bulged C have previously been assumed t

59 of the transporter and is held in place by a hairpin loop and by a salt bridge.

60 e structure, the relative stabilities of the hairpin loop and core quadruplex, and the ability to for

61 oop flanked on one side by a 2-bp stem and a hairpin loop and on the other side by a longer stem whos

62 ral motifs to recognize DNA sequences at the hairpin loop and stem and to unwind DNA.

63 netics on the sequence and the length of the hairpin loop and the helix stem.

64 ary structural elements are classified: 2104 hairpin loops and 3776 internal loops.

65 cally conserved secondary structure with two hairpin loops and a 3-way junction.

66 Tetraloops are the most frequent RNA hairpin loops and are often phylogenetically conserved.

67 This region bears the same sequences in the hairpin loops and four-arm junction as the short palindr

68 cers to investigate the expandability of DNA hairpin loops and the coupling between the loop and clos

69 orating modular 4-way junction (4WJ) motifs, hairpin loops and their cognate loop-receptors to create

70 o their propensity for forming complementary hairpin loops and their elevated mutation rates, tandem

71 ples, 14 occur in multi-stem loops, seven in hairpin loops and three in internal loops.

72 DC3 are composed of residues in the opposing hairpin loops and unwound portions of adjacent helices.

73 "thumb loop," which binds right into the RNA hairpin loop, and a 10 degree hinge movement of the C-te

74 s of different lengths, sequence identity of hairpin loop, and hairpin loop biotinylation at differen

75 tein are braced by the N-terminus and a beta-hairpin loop, and interconnected along the tail by the s

76 The lysine is located atop a flexible hairpin loop, and it shifts into the minor groove upon D

77 g induces a conformational change around the hairpin loop, and the most specific compound recognizes

78 files were searched for internal, bulge and hairpin loops, and each loop's structural information, i

79 tructure motifs, including base-pair stacks, hairpin loops, and internal loops, using their statistic

80 es that are common to other RNA internal and hairpin loops, and molecular recognition principles comm

81 presented to mini-vRNAP in the context of a hairpin loop, appears to interact with mini-vRNAP Trp-12

82 s, selected basic amino acid residues in the hairpin loop are not critical for heparin binding, altho

83 ge, and three residues in the six-nucleotide hairpin loop are quite dynamic in this RNA.

84 additional evidence that small, fast folding hairpin loops are characterized by a rugged energy lands

85 Hairpin loops are critical to the formation of nucleic a

86 Many hairpin loops are expanded versions of smaller, stable o

87 es composing the predicted III-A and SUR-III hairpin-loops are crucial for optimal RNA accumulation a

88 C(4) oligonucleotide, mimicking the unfolded hairpin loop, are consistent with a right-handed A-form-

89 uclei has been proposed to possess a unique "hairpin-loop" arrangement, which is hypothesized to aid

90 e predominant and alternate conformations of hairpin loops, as shown in the most well represented tet

91 iation point mapped to a sequence within the hairpin loop at one end of the VACV genome and to the sa

92 tains a helix around the cleavage site and a hairpin loop at the corresponding position of the T stem

93 ion bound with high affinity to an extended hairpin loop at the dimerization interface.

94 ree single-stranded regions, consisting of a hairpin loop at the end of P3 and two sequences joining

95 ts own, the extended NTD protein has no beta-hairpin loop at the N terminus of CA and that the molecu

96 haeroides groESL1 operon contains a putative hairpin loop at the start of the transcript that is pres

97 Phe(523), positioned in a beta-hairpin loop at the subunit interface, plays a key role

98 To explore the possibility that the hairpin loop at the tip of the trimer contact region mig

99 y an endonuclease into a linear DNA with two hairpin loops at its ends.

100 ical strategy to encourage formation of beta-hairpin loops because natural sequences are often unstru

101 lete bevacizumab binding site, including the hairpin loop (beta5-turn-beta6) and the structure-suppor

102 Furthermore, PgaB310-672 contains a beta-hairpin loop (betaHL) important for binding PNAG that wa

103 are the first to examine small molecule-RNA hairpin loop binding in detail and are a necessary step

104 into the minor groove of a helix, and a GAAA hairpin loop binds to a conserved 11-nucleotide internal

105 gths, sequence identity of hairpin loop, and hairpin loop biotinylation at different loop residues on

106 three nucleotides on the 3' side of the RNA hairpin loop by (ethylene glycol)6-18 spacers does not s

107 s in the structure are constrained to form a hairpin loop by the single disulfide bond in amylin.

108 s self-complementary sequence able to form a hairpin loop, by replacing dC with N:4-ethyldeoxycytidin

109 ssential platform upon which a stable d(GNA) hairpin loop can fold and that this loop can undergo 3'-

110 We have previously shown that BER in a TNR hairpin loop can lead to removal of the hairpin, attenua

111 ing of tryptophan 49, at the tip of the beta-hairpin loop, changes from a low value characteristic of

112 UG have approximately the same stability as hairpin loops closed by AU/UA base pairs, while the loop

113 For hairpin loops closed by GU base pairs, the DeltaG degree

114 t of a model for predicting the stability of hairpin loops closed by GU base pairs.

115 Hairpin loops closed by UG base pairs are on average 1.3

116 The hairpin loops closed by UG have approximately the same s

117 ously developed to predict the stability for hairpin loops closed by Watson-Crick base pairs, allow f

118 approximately 0.7 kcal/mol more stable than hairpins loops closed by GC/CG base pairs.

119 f the N terminus and adjoining transmembrane hairpin loop compared with PheP in a PE-containing strai

120 4R inverse agonist, contains an exposed beta-hairpin loop composed of six residues (Arg-Phe-Phe-Asn-A

121 wo closely related structures and the unique hairpin loop conformation are specific to the P1G4 seque

122 ther, the domino effect and the altered beta-hairpin loop conformation explain how IMP-6 can evolve t

123 ns reveal that Met(73)influences beta3-beta4 hairpin loop conformation, whereas its substitution affe

124 A negative-charge-enriched hairpin loop connecting S5 and the pore helix is positio

125 To test whether this hairpin loop constitutes an ankyrin-binding site on cdb3

126 For 1, the preferred hairpin loops contain an adenine separated by at least t

127 For 2, the preferred hairpin loops contain both 5'GC and 5'CG steps (two-tail

128 ains a single ("lone") base-pair capped by a hairpin loop containing three nucleotides.

129 RNA hairpin loops containing a GNRA consensus sequence are t

130 ab compared the folding of small DNA and RNA hairpin loops containing a sheared GA pair.

131 Specifically, each hairpin loop contains a U-turn motif, but only SLV shows

132 The seven-nucleotide hairpin loop contains the high-affinity hnRNP-A1-respons

133 lates into a closing down movement of a beta-hairpin loop covering the active site.

134 following model to predict the stability of hairpin loops: delta G degree 37L(n) = delta G degree 37

135 ly developed to predict the stability of RNA hairpin loops: DeltaG degrees (37L(n) = DeltaG degrees (

136 in the model to predict the stability of RNA hairpin loops: DeltaG degrees (37L(n) = DeltaG degrees (

137 eine-knot motifs in both subunits create two hairpin loops, designated L1 and L3, on one side of the

138 m8 mapped to a missense mutation in the RHD3 hairpin loop domain, causing accumulation of the mutant

139 edicted to form a curvature-inducing/sensing hairpin loop domain.

140 Two hairpin-loop domains in cystatin family proteinase inhib

141 diate and specifically by the closure of the hairpin loop driven by formation of two native backbone

142 In putative hairpin loops, EMF10A and EMF10B contained CKKGRGDNLNDYC

143 The kinetics of DNA hairpin-loop fluctuations has been investigated by using

144 ing a 5' exonuclease and the other featuring hairpin loop formation and an endonuclease.

145 mplementarity estimation and intra-molecular hairpin loop formation.

146 ces (e.g. (CAG)(16)(CTG)(4)), we resolve all hairpin loops formed and measure their slippage and expa

147 asmic domain and a construct containing the "hairpin loop," formed by the second and third membrane-s

148 PTPRG composed primarily of an extended beta-hairpin loop found in both PTPRG and PTPRZ.

149 is similar to the GU closing pair of the 690 hairpin loop found in E. coli 16S rRNA.

150 (3) A beta-hairpin loop found in MogA is absent from Geph-G and Cnx

151 , including an amino-terminal segment with a hairpin loop, four kringle domains, and a serine proteas

152 to plasminogen, including an amino-terminal hairpin loop, four kringle domains, and a serine proteas

153 a-Phe-DPro], comprised the hexa-peptide beta-hairpin loop from AGRP cyclized through a DPro-Pro motif

154 The removal of an autoinhibitory beta-hairpin loop from genotype 2a HCV NS5B increases de novo

155 Herein, we report the RNA hairpin loops from a six-nucleotide hairpin library that

156 Hairpin loops from c-src and GABAA gamma2 pre-mRNAs and

157 In MoMLV, a hairpin loop functioning as a dimer linkage structure (D

158 The hairpin loop GUAAUA occurs frequently in ribosomal RNA.

159 arious kringle domains or the amino-terminal hairpin loop had various effects in the multiple assays.

160 The thermodynamic stability of RNA hairpin loops has been a subject of considerable interes

161 In 1 M NaCl, the eight-nucleotide RNA hairpin/loop has the most favorable folding free energy

162 The latter contains potential hairpin loops, 'hinge' elements and the promoters for tr

163 d secondary structure of SP genomic RNA: (i) hairpin loops; (ii) hairpin stems; and (iii) the 5' regi

164 We show that deleting the beta hairpin loop in RB69 gp43 affects neither polymerase nor

165 s from a previous X-ray structure to model a hairpin loop in TAR, the best-fit RDC assignment solutio

166 According to the deadbolt model, a hairpin loop in the beta3 tail domain could act as a dea

167 e ankyrin binding site was located on a beta-hairpin loop in the cytoplasmic domain.

168 The results suggest that an extended beta-hairpin loop in the endonuclease domain that contains re

169 The sequence differences in a beta-hairpin loop in the kinase domain causes a translational

170 with the nucleotides encoding the 11-aa beta-hairpin loop in the mouse Slc4a1 gene replaced with sequ

171 isms involve formation of a quasipalindromic hairpin loop in the template and dissociation of DNA pol

172 A unique beta-hairpin loop in the thumb subdomain may play an importan

173 "zipper" complex, or nucleation through the hairpin loops in a "kissing" complex.

174 emis open AAV inverted terminal repeat (ITR) hairpin loops in a tissue-dependent manner.

175 cur with the greatest probability in similar hairpin loops in proteins.

176 Phylogenetically variable hairpin loops in ribosomal RNA are mutated to allow hybr

177 and kink-turn internal loops or T- and GNRA hairpin loops) in any PDB file or across a whole set of

178 l RdRps that contain similar regulatory beta-hairpin loops, including bovine viral diarrhea virus, de

179 that lentiviral constructs containing short hairpin loop inhibitory RNAs for human YY1 (shYY1) and i

180 and selectivities of a subset of the ligand-hairpin loop interactions were determined.

181 To reveal mechanism, we tested different hairpin loop intermediates expected to form and facilita

182 , as well as single-stranded regions such as hairpin loops, internal loops, and junctions.

183 ry interactions involves the docking of GNRA hairpin loops into stem-loop structures on other regions

184 This hairpin loop is critical for efficient catalysis in the

185 The six-nucleotide hairpin loop is highly conserved in large subunit riboso

186 ment at this position indicates that the DNA hairpin loop is not opened at the position adjacent to t

187 The structure of the L3 central hairpin loop isolated from the antigenomic sequence of t

188 e spliceosomal U2B"/U2A' protein complex and hairpin-loop IV of U2 small nuclear RNA.

189 ces, J1/4 and J4/2, together with one of the hairpin loops, L3.

190 was probed for binding to a 6-nucleotide RNA hairpin loop library (4096 members).

191 used herein to analyze a six-nucleotide RNA hairpin loop library.

192 (gp4), the product of gene 4, has basic beta-hairpin loops lining its central core where they are pos

193 n an RNA-RNA kissing-loop interaction with a hairpin loop located at the 5' end of the RNA.

194 ions of proNGF are mostly disordered and two hairpin loops (loop 2) at the top of the NGF dimer have

195 intron of the human gene, suggesting that a hairpin loop may be involved in this intronic polyadenyl

196 Hairpin loops may be opened by strand displacement using

197 The stable d(cGNAg) hairpin loop motif (closing base pair in lower case; loo

198 of an experimentally well-characterized RNA hairpin-loop motif (sequence 5'-GGGC[GCAA]GCCU-3') via e

199 selected variants (30) had W79 in the second hairpin-loop motif, but there was diversity for hydropho

200 nding and inhibition appears to be a 40-base hairpin/loop motif with an asymmetrical internal loop.

201 to form coordinative chain cross-links in a "hairpin loop" motif.

202 Previous work from our lab on small DNA hairpin loop motifs, d(cGNAg) and d(cGNABg) (where B is

203 y developed to predict the stability for RNA hairpin loops (n > 3) includes contributions from the si

204 type of stacking interactions in the stem 1 hairpin loop not present in the pseudoknot.

205 he newly selected structure is a terminal or hairpin loop of 20 nucleotides, 15 being invariant.

206 of the coat protein (CP) gene, with a bulged hairpin loop of 28 nt as its most essential element, was

207 s reveal new functions for the alpha5-alpha6 hairpin loop of Bax: (i) regulation of mitochondrial tar

208 ntaining the hif-2 genes with termini in the hairpin loop of flanking intergenic dyad sequences.

209 hydrophobic interaction with an exposed beta hairpin loop of M48(USP).

210 rvation, we hypothesized that the disordered hairpin loop of sNRE facilitates conformational rearrang

211 ed with the MGDW motif located in a putative hairpin loop of the B subunit and that the expression of

212 f the inhibitor's linker segment with the 99-hairpin loop of trypsin, which is absent in plasmin.

213 to interact with a hairpin helix of AcrA and hairpin loops of AcrB respectively.

214 We used structure-based mutations on the hairpin loops of myotrophin to determine the effect of t

215 For hairpin loops of n = 3, delta G degree 37L(3) = +4.8 + 0

216 For hairpin loops of n = 4-9, delta G037iL(n) is 4.9, 5.0, 5

217 For hairpin loops of n = 4-9, deltaGo(37iL)(n) is 4.9, 5.0,

218 recent model that predicts the stability of hairpin loops of six nucleotides on the basis of the clo

219 Mutations in the bulge and hairpin loops of stem C decreased the ability of the tRN

220 The 5' end of 3-base hairpin loops of the ITR was the primary target for DNA-

221 Hairpin loops of three are modeled as independent of loo

222 tire length, initial N-portion residues, and hairpin-loop of three Pro and one Ser residues, as well

223 trand is blocked and diverted sideways by OB hairpin-loops of Mcm3, Mcm4, Mcm6, and Mcm7.

224 he insert of interest, and a single-stranded hairpin loop on either end, which provides a site for pr

225 FKBP51 mutation L119P, which is located in a hairpin loop overhanging the catalytic pocket and introd

226 These results strongly suggest that the hairpin loop participates in the binding of substrate an

227 tted DNA sequences as input and identify the hairpin looping patterns, and (ii) exploit the consensus

228 e the motifs that each ligand binds, and the hairpin loop preferences for 1 and 2 were computed.

229 A hairpin loop protruding from RidL inserts into a conserv

230 epresented by the presence or absence of DNA hairpin loops protruding out of the lattice plane.

231 s were observed, such as small inversions in hairpin-loop regions and indels, which were common in in

232 motifs of the first (QVVAG) and second (EW) hairpin-loop regions were constructed.

233 ults define residues in the first and second hairpin-loop regions which are essential for optimal int

234 Other substitutions in beta-hairpin loop residues increased initiation fidelity and

235 Analysis of the structures of these three hairpin loops reveals a network of heterogeneous hydroge

236 ped a method to express dsRNA as an extended hairpin-loop RNA.

237 ct palindromic sequences that could produce "hairpin-loop" secondary structures with relatively high

238 ng recurrent 3D motifs from RNA internal and hairpin loop sequences extracted from secondary structur

239 All possess shortened hairpin-loop sequences expected to alter tertiary contac

240 zes the template-strand hairpin owing to the hairpin-loop sequences.

241 revealed that residues 175-185 assume a beta-hairpin loop similar to a putative ankyrin-binding motif

242 ally incorporated into the cruciform arms as hairpin loops, single unpaired bases, and complex local

243 The model for predicting hairpin loop stability for loops larger than three becom

244 D (1)H-NMR structure of HB10 revealed a beta-hairpin loop stabilized by the disulfide bond and cross-

245 motifs, such as asymmetric internal loops or hairpin loop-stem junctions, by aminoglycoside antibioti

246 sequence (U/G)CCCG(A/G) in the context of a hairpin loop structure (nucleolin recognition element; N

247 ined the B52-binding site on these RNAs as a hairpin loop structure covering about 20 nucleotides, wh

248 embrane distal tip of the short helix of the hairpin loop structure, and HA2 position 112, located in

249 ine-binding RNAs have a common internal loop-hairpin loop structure, based on a conserved RAAGUGGGKKN

250 deletions occurred within the same potential hairpin loop structure, which had the lowest free energy

251 ructure analyses indicate a single conserved hairpin-loop structure towards the 5' end of the transcr

252 aptamer truncation study indicated that the hairpin-loop structure with 23 nucleotides length contai

253 9(ts) mutation by a process mediated by long hairpin loop structures (>/=5 repeats).

254 anhandle structure and the presence of local hairpin loop structures in both the 5' and 3' ends of vR

255 oducts allowed precise identification of the hairpin loop structures involved in termination/antiterm

256 (most stable hairpin) of the five potential hairpin loop structures present in the 25K FP gene.

257 umerous complex mutation patterns, including hairpin loop structures, and explains multinucleotide mu

258 equilibrium between quadruplexes and stable hairpin-loop structures bound by optimal SSOs.

259 ur data indicate that multiple stem-loop and hairpin-loop structures exist within this region.

260 Such ligand target sites exist as hairpin-loop structures in the mRNAs of several of the p

261 ithin the sRNA teg49, there are two putative hairpin-loop structures, HP1 and HP2.

262 The ribozyme can act in trans on a hairpin-loop substrate, with which it interacts via tert

263 solution and solid-state structures of this hairpin loop suggests that formation of this hairpin may

264 esult from structural differences in TIMP AB hairpin loops than from crystal packing artifacts.

265 g of arginines within a specific beta2-beta3 hairpin loop that arose during selection.

266 activated by the addition, in trans, of a ds hairpin loop that contains only the binding region of th

267 UIM forms an alpha-helix with an unexpected hairpin loop that contributes to the binding interface w

268 mational changes in EF-Tu, displacing a beta-hairpin loop that forms a critical salt-bridge contact w

269 ers solved the structure of a hexanucleotide hairpin loop that is conserved in large subunit ribosoma

270 contacts, many that are made by a long beta-hairpin loop that reaches into the major groove of the D

271 Herein, we report the identification of RNA hairpin loops that bind derivatives of kanamycin A, tobr

272 expand the information available on the RNA hairpin loops that bind small molecules and could prove

273 araplegia encode proteins with intramembrane hairpin loops that contribute to the curvature of the en

274 le bimolecular structure containing two GTTT hairpin loops that interact through a novel T : G : G :

275 at TNR expansion can be prevented via BER in hairpin loops that is coupled with the removal of TNR ha

276 th the RNA polymerase involve a portion of a hairpin loop (the specificity loop) that makes specific

277 ps revealed that consecutive ANK repeat beta-hairpin loop tips (repeats 22-24) are required for InsP(

278 e ankyrin-B ANK (ankyrin repeat) repeat beta-hairpin loop tips revealed that consecutive ANK repeat b

279 ve altered multiple residues within the beta-hairpin loop to determine their role during dTTPase-driv

280 oices for loop, neck, and toehold length for hairpin loops to be used as fuel for autonomous DNA devi

281 e helix-turn-helix motif and within the beta hairpin loop, two putative DNA binding domains within th

282 The hairpin loop, UAGAAGC closed by a U-A pair, is the same

283 The QVVAG motif in the first hairpin loop was invariant in all functional scN protein

284 A folding transition taking place in the RNA hairpin loop was shown to have a negligible dependence o

285 A.U helices were modestly affected, and the hairpin loop was very sensitive.

286 GCGU4U5A6A7G8U9CGCA), which has an r(UUAAGU) hairpin loop, was determined by NMR and molecular modeli

287 and the conformation of the active site beta-hairpin loop were characterized by the MD analyses.

288 Arg82, Lys84 and His86, located in a hairpin loop, were found to be critical for binding KDR/

289 s mRNA, including the potential formation of hairpin loops which might be important in its intracellu

290 ant E. coli strains; the in vivo cleavage of hairpin loops, which are an obligate consequence of slip

291 graminearum preferentially targets A's in hairpin loops, which is similar to the anticodon loop of

292 ich the energetics and structure of d(cGNAg) hairpin loops will tolerate sequence variation.

293 il dimerization of two symmetry-related stem-hairpin loops with adjacent strands antiparallel to each

294 or CTG triplets in DNA can form intrastrand hairpin loops with combinations of normal and mismatched

295 triplet, in accordance with our finding that hairpin loops with even numbers of triplets are 1-2 kcal

296 The sequence forms a hairpin loop, with residues important for binding occurr

297 dy of the hybridization of complementary DNA hairpin loops, with particular reference to their use as

298 ragment buries several phosphate groups of a hairpin loop within a large tertiary core.

299 tion factor by site-specific cleavage of two hairpin loops within its mRNA to facilitate its nonconve

300 It cannot be considered to be a simple hairpin-loop yet it is distinct from other well characte