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1 of the complementary strand, producing a new heteroduplex.
2 ve site is expanded to accommodate a growing heteroduplex.
3 ide RNA (sgRNA) are present in the sgRNA:DNA heteroduplex.
4 st chromosome to form a physical and genetic heteroduplex.
5 sion to the discontinuous strand of a nicked heteroduplex.
6 nerating increasing or decreasing lengths of heteroduplex.
7 cal geometry into the DNA/RNA portion of the heteroduplex.
8 contacts between REC3 and the guide RNA-DNA heteroduplex.
9 complexes containing a 10- or a 12-base-pair heteroduplex.
10 ge of complementary base pairs to form a new heteroduplex.
11 omplementary cytosine-rich sequences to form heteroduplexes.
12 g activity when interacting with nucleosomal heteroduplexes.
13 tion of loaded beta clamp on either 3' or 5' heteroduplexes.
14 ch with its own rules for mismatch repair of heteroduplexes.
15 RNA duplexes but not DNA duplexes or RNA-DNA heteroduplexes.
16 rna22 identifies most of the currently known heteroduplexes.
17 croRNA binding sites and their corresponding heteroduplexes.
18 ha, which efficiently corrects both types of heteroduplexes.
19 epleted HeLa extract in repair of mismatched heteroduplexes.
20 ctly on the surface concentration of DNA-RNA heteroduplexes.
21 from Ago2 peaks and prediction of miRNA::RNA heteroduplexes.
22 , intramolecular stem-loops into more stable heteroduplexes.
23 tions happen and the specifics of the formed heteroduplexes.
24 usly studied in this respect, cleave RNA/DNA heteroduplexes.
25 he mismatch and a d(GATC) site in a circular heteroduplex abolishes MutH activation, whereas a double
26 sed, the mismatch insensitive binding in the heteroduplex allows short mismatched regions to be incor
28 by single-strand conformational polymorphism-heteroduplex analysis (SSCP-HA) and by direct sequencing
30 ded to each unknown before PCR, quantitative heteroduplex analysis can differentiate heterozygous, ho
32 mperature-gradient capillary electrophoresis heteroduplex analysis of PCR amplicons of genes and ESTs
34 givalis strain diversity, we previously used heteroduplex analysis of the ribosomal operon intergenic
35 formed on 7 by PCR of each exon, followed by heteroduplex analysis using denaturing high-performance
36 this study was to apply temperature-mediated heteroduplex analysis using denaturing high-performance
37 onto the RNA array to form a surface RNA-DNA heteroduplex and (ii) the hydrolysis of the RNA microarr
38 yribonucleotide at the catalytic site of the heteroduplex and consisted of southern, northern, and ea
42 romoting local melting of already formed DNA heteroduplex and transient reverse strand exchange in a
43 e show that a more detailed model, involving heteroduplex and transient-duplex formation, leads to si
44 h RNase H required the presence of a surface heteroduplex and, upon completion, regenerated the origi
47 t with commercial antibodies specific to the heteroduplexes and secondary antibodies conjugated with
48 f these enzymes that can also cleave RNA/DNA heteroduplexes and that may therefore be useful as tools
49 ly in cleaving non-specifically at bulges in heteroduplexes, and single-base mismatches are the least
50 EDC and imidazole, of the hybridized PNA/DNA heteroduplexes, and then they were exploited as the elec
51 fic RNA-DNA antibodies recognizing miRNA-DNA heteroduplexes, antipoly(A)-poly(dT) and anti-S9.6, were
53 or human and mouse miRNAs revealed that many heteroduplexes are "non-canonical" i.e. their seed regio
55 In the presence of target miRNA, DNA-RNA heteroduplexes are formed and become substrate for the e
57 single-stranded DNA, (2) that the resulting heteroduplexes are resolved by chromosome replication an
60 in the genital tract and blood, we performed heteroduplex assays on amplified env products from cell-
61 he native strand in a native:phosphoramidate heteroduplex at a rate comparable to that observed with
63 ctly purifies the single-stranded regions of heteroduplexes between alternative splices formed in the
66 nd at saturating protein concentrations, the heteroduplex-bound mass observed with MutS800 is only ha
69 required for genome packaging, disrupts the heteroduplex by binding tightly to U5 (K(d) = 122 +/- 10
70 Incision of a nicked mismatch-containing DNA heteroduplex by this four-protein system is strongly bia
71 es were introduced to the hybridized PNA/DNA heteroduplexes by employing phosphate-zirconium-carboxyl
72 preferential processing of base-base and ID heteroduplexes by MutSalpha and MutSbeta is determined b
73 duplexes and support ribonuclease H mediated heteroduplex cleavage, all with negligible non-specific
74 ltered enzymatic activity toward immobilized heteroduplexes compared to substrates free in solution.
75 drolysis of nucleotide cofactors by the MutS-heteroduplex complex are required for downstream MMR act
78 for a C3'-endo conformation, and stabilizes heteroduplexes composed of modified DNA and complementar
79 from D344R, the sequence of which revealed a heteroduplex consistent with Int(Tn916)-mediated excisio
80 ence intensity of cells transfected with the heteroduplex construct divided by that of cells transfec
82 Here, we showed that MutS bound to a 30-bp heteroduplex containing an unpaired T with a binding aff
83 ocess DNA loop structures, a set of circular heteroduplexes containing a 30-nucleotide loop were cons
86 ased and artifacts are reduced by generating heteroduplexes containing only one of the two possible m
87 pecific recognition and binding of MutS to a heteroduplex, containing either a mismatch or an inserti
88 melting curve separation is proportional to heteroduplex content difference and that the addition of
89 ection system to assay cleavage of amplified heteroduplexes derived from a variety of induced mutatio
90 the mechanism of gene targeting, we examined heteroduplex DNA (hDNA) formation during targeting of tw
92 These models differ in the arrangement of heteroduplex DNA (hDNA) in recombination intermediates.
94 e function of Rad54 is removal of Rad51 from heteroduplex DNA (hDNA) to allow HR-associated DNA synth
95 tiating DSB, with a short (<300 bp) tract of heteroduplex DNA (hDNA) to one side and hDNA on the othe
99 rkers spanning the DSB should be included in heteroduplex DNA and be detectable as non-Mendelian segr
100 e 3' invading strand to be incorporated into heteroduplex DNA and to be extended by DNA polymerases.
102 ous conversion tracts, as well as persistent heteroduplex DNA at crossover sites in mature spermatozo
104 ion between divergent sequences by rejecting heteroduplex DNA containing excessive nucleotide mismatc
105 hought to promote dissociation of RAD51 from heteroduplex DNA following strand exchange during homolo
106 e tract length and directionality, including heteroduplex DNA formation, transcription, replication a
110 (OsPERT) was primarily developed to prepare heteroduplex DNA from alkali-denatured high molecular we
111 the repair of 1-nucleotide loop mispairs in heteroduplex DNA generated during meiotic recombination.
112 ed in the rad51Delta mutant, indicating that heteroduplex DNA has an altered structure, or is process
114 lectrophoretic mobility of homoduplex versus heteroduplex DNA hybrids in high concentration agarose g
115 We have analyzed repair of nicked circular heteroduplex DNA in extracts of Exo1-deficient mouse emb
116 nation in male mice by analyzing patterns of heteroduplex DNA in recombinant molecules preserved by t
117 port of this, analysis of the arrangement of heteroduplex DNA in the postmeiotic segregation products
118 ation in the yeast Saccharomyces cerevisiae, heteroduplex DNA is formed when single-stranded DNAs fro
119 l repeats can be used for repair showed that heteroduplex DNA is likely to be unwound rather than deg
121 amino acids involved in the stabilization of heteroduplex DNA joints with mismatch-containing base tr
122 ic amino acids gain the ability to stabilize heteroduplex DNA joints with mismatch-containing base tr
124 g the process of homologous recombination, a heteroduplex DNA structure, or a 'Holliday junction' (HJ
125 actions between polymerase II (Pol II) and a heteroduplex DNA template do not depend on general trans
126 ces to cleave single base pair mismatches in heteroduplex DNA templates used for mutation and single-
127 phosphorylated RPA initially binds to nicked heteroduplex DNA to facilitate assembly of the MMR initi
128 tial fraction of crossover products retained heteroduplex DNA, and some provided evidence of MSH2-ind
130 Bs) but does not progress beyond this stage; heteroduplex DNA, joint molecules, and crossovers are no
135 ous dsDNA undergoes strand exchange yielding heteroduplex dsDNA in site I and the leftover outgoing s
136 d of a double-stranded DNA (dsDNA) and forms heteroduplex dsDNA in site I if homology is encountered.
138 at the DNA synthesis requires formation of a heteroduplex dsDNA that pairs >20 contiguous bases in th
139 leading end of a RecA/ssDNA filament, while heteroduplex dsDNA unbinds from the lagging end via ATP
140 airing events but, rather, it stimulates DNA heteroduplex extension in the 3' --> 5' direction relati
142 e stabilizes nascent joint molecules via DNA heteroduplex extension to permit capture of the second p
145 CVR2 exon 3 and 10 microsatellites underwent heteroduplex formation (A(7)/T(8)) in hMLH1(-/-) cells,
146 een homeologous repeats yielded evidence for heteroduplex formation and preferential migration of the
147 ing that mismatches encountered early during heteroduplex formation induce rapid rejection of off-tar
148 dence that DNA strand separation and RNA-DNA heteroduplex formation initiate at the PAM and proceed d
149 racts primarily through base pairing, making heteroduplex formation strictly dependent on complementa
153 elting studies of Watson-Crick complementary heteroduplexes formed between 2'-O-methyl RNA and RNA ol
155 phoretic analysis of splicing variants where heteroduplexes formed from different variants can produc
156 se H (RNase H) surface hydrolysis of RNA-DNA heteroduplexes formed on DNA microarrays was studied usi
160 omplexes were assembled by using a series of heteroduplex HIS4 promoters, TATA binding protein (TBP),
161 fluorescently labeled riboswitch RNA from a heteroduplex in a 5'-to-3' direction, at ~60 nt s(-1) [c
162 nuclease lobes, accommodating the sgRNA:DNA heteroduplex in a positively charged groove at their int
164 The causes of anomalous migration of Ppd-A1 heteroduplexes in gels were found to be the localization
165 acterized the preference of Pif1 for RNA:DNA heteroduplexes in vitro by investigating several kinetic
166 early step for HR pathways is formation of a heteroduplex, in which a single-strand from the broken D
167 ydrolyzable ATP analogue modulates MutSalpha.heteroduplex interaction in a manner that is distinct fr
169 hat one-sided events reflect events in which heteroduplex is formed predominantly on only one side of
173 Interestingly, binding of MutSbeta to ID heteroduplexes is greatly stimulated when the MutSalpha:
176 stability experiments conducted on homo- and heteroduplexes made of (S)-ZNA are described that evince
177 te could not be attributed solely to altered heteroduplex melting, strongly suggesting that specific
178 e phosphate groups of the hybridized PNA/DNA heteroduplexes merely through one-step conjugation in th
182 nfected, using clonal frequency analysis via heteroduplex mobility analysis of the second envelope ge
183 assay compared to either the sequence or the heteroduplex mobility assay (HMA)-determined subtypes.
185 this novel long-amplicon method followed by heteroduplex mobility assay combined with single-strande
186 Polymerase chain reaction combined with a heteroduplex mobility assay was subsequently used to eff
188 assessed 64 patients for dual infection with heteroduplex mobility assay, viral sequencing, and phylo
194 moduplexes of DNA, aeg-PNA, gamma-PNA, and a heteroduplex of DNA/aeg-PNA with identical nucleobase se
196 striction endonucleases to hydrolyze RNA-DNA heteroduplex oligonucleotide substrates was assessed.
199 vely and repeatedly destroy RNA from RNA-DNA heteroduplexes on gold surfaces; when used in conjunctio
200 o the formation of a high density of PNA/DNA heteroduplexes on the electrode surface for the subseque
201 not be used in analytical methods to resolve heteroduplexes; only with the simplex system can proper
202 some with much lower efficiency than a naked heteroduplex or a heterology free of histone proteins bu
203 most cases, dimorphisms were detected using heteroduplex or single-strand conformational polymorphis
204 e complementary strand, forming either a new heteroduplex or-if homology is limited-a D-loop(1,2).
205 ses this process, through the cooperation of heteroduplex pairing with the binding of ssDNA to the se
208 mismatch to G-C or T-A, respectively, in the heteroduplex plasmid generates a functional EGFP gene ex
209 g due to the presence of unprocessed RNA/DNA heteroduplexes, potentially leading to the degradation o
211 and is associated with translocation of the heteroduplex product as well as strand separation of the
212 ors, the MMR system can remove mismatches in heteroduplex recombination intermediates to generate gen
221 Deleting PMS1, MLH2,or MLH3 had no effect on heteroduplex rejection, but a pms1 Delta mlh2 Delta mlh3
226 ided events are the norm but are "hidden" as heteroduplex repair frequently restores the parental con
229 arison of the PNA homoduplex and the PNA-RNA heteroduplexes reveals PNA's intrinsic structural proper
231 ion: it not only determines the guide-target heteroduplex's nucleation and propagation, but also regu
232 resence of sequence heterogeneity in a given heteroduplex sample by introducing a thermal denaturing
235 However, correction of the mismatches within heteroduplex SSA intermediates required PMS1 and MLH1 to
236 and theoretical results suggesting that the heteroduplex stability is insensitive to mismatches.
237 pting a pre-existing stem loop and forming a heteroduplex stabilized by 11 Watson-Crick base pairs (K
238 depends on MutL alpha incision of the nicked heteroduplex strand and dNTP-dependent synthesis-driven
239 ndent instability in the base pairing in the heteroduplex strand exchange product could provide strin
240 ovoked by MeG-T is restricted to the incised heteroduplex strand, leading to removal of the MeG when
241 und that Artemis is capable of nicking small heteroduplex structures and is even able to nick single-
242 RNA-functionalized AuNPs which form DNA-RNA heteroduplex structures through specific hybridization w
243 gar conformation and helical geometry of the heteroduplex substrate at the catalytic site of human RN
244 rminants in the selective recognition of the heteroduplex substrate by human RNase H1 and offer immed
247 NA elements, and RNA length to slipping on a heteroduplex template using a highly purified human pol
248 active on duplex DNA, were suppressed by the heteroduplex templates, showing that a major function of
250 r trans-T(p) by sequestering trans-T(p) in a heteroduplex that is more stable than homoduplex [T(p).T
251 ence of any mutation on the target DNA forms heteroduplexes that are subsequently denatured from the
252 e (MeG), we have constructed nicked circular heteroduplexes that contain a single MeG-T mispair, and
254 fically recognizes both types of nucleosomal heteroduplexes, the protein bound the mismatch within a
256 genes are denatured and re-annealed to form heteroduplexes; they are then incubated with either comp
257 isense oligodeoxyribonucleotide (ASO) of the heteroduplex to alter the helical geometry of the substr
259 ons of the env gene were examined by using a heteroduplex tracking assay (HTA) capable of resolving t
264 erse transcriptase inhibitor therapy using a heteroduplex tracking assay designed to detect common re
266 peripheral blood were determined by use of a heteroduplex tracking assay specific for the EBV gene en
267 od plasma and CSF were characterized using a heteroduplex tracking assay targeted to the V1/V2 hyperv
268 ild-type genotype ratio was measured using a heteroduplex tracking assay targeting tenofovir-selected
269 with matching blood were analyzed by using a heteroduplex tracking assay to distinguish LMP1 variants
271 ax merozoite surface protein 1 gene (Pvmsp1) heteroduplex tracking assay, we genotyped 107 P. vivax i
275 chronic phase of disease, and we analyzed by heteroduplex tracking assays and sequence analysis the d
280 rehensively examine the variability of major heteroduplex type strains by using the entire genome.
281 of the genomes of seven clinically prevalent heteroduplex type strains identified 133 genes from stra
282 fied 6 predominant geographically widespread heteroduplex types (prevalence, > or = 5%) and 14 rare h
283 ex types (prevalence, > or = 5%) and 14 rare heteroduplex types (prevalence, <2%) which are found in
285 cess called large loop repair (LLR) corrects heteroduplexes up to several hundred nucleotides in bact
286 has been employed that combines cleavage of heteroduplexes using the Cel nuclease (Cel I), post-clea
287 Cleavage of a fluorescein-labeled RNA-DNA heteroduplex was monitored by capillary electrophoresis.
288 that the difference in MutS K(d) for various heteroduplexes was attributable to the difference in int
289 kinetic association event of MutS binding to heteroduplexes was marked by positive cooperativity.
291 MSH3, together with MSH2, forms the MutSbeta heteroduplex, which interacts with interstrand cross-lin
292 deaminate overhanging DNA strands of RNA/DNA heteroduplexes, which are early intermediates during rev
293 s from a single strand of targeting DNA into heteroduplex with the targeted locus creates a mismatch
294 on, orientation-specific mismatch removal of heteroduplexes with a pre-existing nick was monitored in
295 ing of protease variants isolated as RNA/DNA heteroduplexes with different electrophoretic mobilities
298 nstead, Pif1 is capable of unwinding RNA:DNA heteroduplexes with moderately greater processivity comp
299 In a sample solution, strands of DV RNA form heteroduplexes with the QD-CPs on the magnetic beads.
300 purely based on thermal denaturation of DNA heteroduplexes without the need for enzymatic reactions.