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1 g the assembly line toward functional [NiFe]-hydrogenase.
2 O, thereby providing the carbonyl ligand for hydrogenase.
3 of nickel-containing enzymes such as [NiFe]-hydrogenase.
4 f glycine ends up in the CO ligand of [NiFe]-hydrogenase.
5 ding an actinobacteria-type H2-uptake [NiFe]-hydrogenase.
6 , photosystem II, to the H2 evolving enzyme, hydrogenase.
7 of Desulfovibrio vulgaris Miyazaki F [NiFe]-hydrogenase.
8 te the proton reduction activity of a [NiFe] hydrogenase.
9 HypC residues relevant for the maturation of hydrogenase.
10 component of the catalytic H-cluster of FeFe hydrogenase.
11 highly fragile catalysts such as the enzyme hydrogenase.
12 of H-cluster maturation occurring within apo-hydrogenase.
13 d all-Fe variants, and the [FeFe] and [NiFe] hydrogenases.
14 ession but decreased expression of all other hydrogenases.
15 the well-studied dinuclear [FeFe] and [NiFe] hydrogenases.
16 ion emulate components of the active site of hydrogenases.
17 it elusive, catalytic intermediate of [NiFe]-hydrogenases.
18 duction of the encapsulated oxygen-sensitive hydrogenases.
19 , FDX9, is potentially the electron donor to hydrogenases.
20 h nickel diphosphine molecular catalysts and hydrogenases.
21 e structure-activity relationships of [FeFe]-hydrogenases.
22 tate bidirectional proton transfer in [FeFe]-hydrogenases.
23 entified in several native and mutant [FeFe]-hydrogenases.
24 erstanding the catalytic mechanism of [FeFe] hydrogenases.
27 es, that the Ni-C to Ni-L interconversion in Hydrogenase-1 (Hyd-1) from Escherichia coli is a pH-depe
28 ide reacts rapidly with [NiFe]-hydrogenases (hydrogenase-1 and hydrogenase-2 from Escherichia coli) u
29 electron entry/exit site in Escherichia coli hydrogenase-1 is shown to play a vital role in tuning bi
30 with [NiFe]-hydrogenases (hydrogenase-1 and hydrogenase-2 from Escherichia coli) under mild oxidizin
31 y that allows synthesizing functional [NiFe]-hydrogenase-2 of Escherichia coli from purified componen
32 comprise a rare example of an active [NiFe]-hydrogenase-4 (Hyd-4) isoenzyme, itself linked to an unu
34 tion-based metabolism featuring a variety of hydrogenases, a streamlined nitrogenase, and electron bi
36 anting Mu(.) into three models of the [FeFe]-hydrogenase active site we have been able to detect key
38 This reflects either that H/D exchange at hydrogenase active sites is rapid compared to the rate o
42 locality in the chloroplast preserves [FeFe]-hydrogenase activity and supports continuous hydrogen pr
44 xamined one E. coli strain with undetectable hydrogenase activity in more detail (DeltaeutK), finding
48 te network of systems that underwrite [NiFe]-hydrogenase activity, including nickel homeostasis and f
49 spite the importance of nickel transport for hydrogenase activity, the sole contribution of yntA and
52 a a periplasmic formate dehydrogenase and/or hydrogenase, allowing energetic coupling to hydrogenotro
53 and expresses the genes for a high-affinity hydrogenase and carbon monoxide dehydrogenase, suggestin
59 rms a transient interaction complex with the hydrogenase and that the formation of this complex depen
60 embly of the binuclear active site of [NiFe] hydrogenase and the nitrogenase active site cluster FeMo
62 I possesses electron transfer flavoproteins, hydrogenases and formate dehydrogenases essential for sy
63 hat incorporates catalytically active [FeFe]-hydrogenases and functional partners within the empty sh
69 ones, aldehydes, imines, and carbon dioxide, hydrogenases and their model complexes, and palladium ca
70 of hydride complexes found in nature (e.g., hydrogenases) and in industry (e.g., catalysis and hydro
72 relevance for the catalytic cycle of [FeFe] hydrogenase, and novel strategies for exploring these as
73 oCbl)-dependent methylmalonyl-CoA mutase and hydrogenase, and thus have both medical and biofuel deve
74 Some Saganbacteria genomes encode various hydrogenases, and others may be able to use O(2) under c
75 ne gene families involved in photosynthesis, hydrogenases, and proteins involved in defense from envi
76 oxygen tolerance in soluble, group 3 [NiFe]-hydrogenases, and we present a model integrating both el
78 n this Perspective, hydride states of [FeFe]-hydrogenases are considered on the basis of hydricity, a
79 onic properties of the active site of [NiFe]-hydrogenases are crucial for efficient H2 binding and cl
80 prings reveals that genes encoding oxidative hydrogenases are enriched in communities inhabiting spri
94 ctron and proton transfer pathways in [FeFe]-hydrogenases are well separated from each other in space
95 active sites of a number of enzymes (such as hydrogenases), are promising therapeutic agents, and hav
96 k, we developed a whole-cell high-throughput hydrogenase assay based on the colorimetric reduction of
97 netic optimization of an artificial transfer hydrogenase (ATHase hereafter), [(eta(5)-Cp*)Ir(pico)Cl]
99 or a fully renewable H(2) technology, [FeFe]-hydrogenases behave as highly reversible electrocatalyst
102 ring and delivering a precatalyst to the apo-hydrogenase, but the details of this process are not wel
103 cs is recognized for many enzymes, including hydrogenases, but is largely neglected in designing synt
104 he absence of S degrees and have up to seven hydrogenases, but their combined physiological roles are
105 ear active site of an oxygen-tolerant [NiFe] hydrogenase by probing the metal-ligand modes of both th
106 tly, it is shown how the hydricity of [FeFe]-hydrogenases can inspire future research efforts in both
117 ins, is responsible for the synthesis of the hydrogenase CO and CN(-) ligands from tyrosine-derived d
118 gands as well as dithiomethylamine; the [Fe]-hydrogenase cofactor has CO and guanylylpyridinol ligand
119 complex is shown to comprise HycE (a [NiFe] hydrogenase component termed Hyd-3), FdhF (the molybdenu
125 tral carbon, whereas the H-cluster of [FeFe]-hydrogenase contains a 2Fe subcluster coordinated by cya
128 this end, we exposed crystals of the [FeFe]-hydrogenase CpI from Clostridium pasteurianum to oxygen
129 s by site-directed mutagenesis in the [FeFe]-hydrogenase CpI of Clostridium pasteurianum to reveal th
130 ing the Clostridium pasteurianum (Cp) [FeFe] hydrogenase, CpI, we detected significant rates of direc
131 Experiments were carried out on two [FeFe]-hydrogenases, CrHydA1 from the green alga Chlamydomonas
132 ata from an ancient relative, membrane-bound hydrogenase, cryo-EM on mammalian complex I has provided
133 Mycobacterium smegmatis has two such [NiFe] hydrogenases, designated Huc and Hhy, that belong to dif
137 urthermore, PfSHI, like other group 3 [NiFe]-hydrogenases, does not possess the proximal [4Fe3S] clus
141 have an energy-converting, ion-translocating hydrogenase (Ech) as a potential respiratory enzyme.
142 microelectrodes were modified with a [NiFe]-hydrogenase embedded in a viologen-modified redox hydrog
143 encoded by dvu0531-dvu0536) and the Fe-only hydrogenase (encoded by dvu1769, hydA and dvu1770, hydB)
145 Nitrogenase, [FeFe]-hydrogenase, and [Fe]-hydrogenase enzymes perform catalysis at metal cofactors
149 llent integration of both photosystem II and hydrogenase for performing the anodic and cathodic half-
151 nickel-containing enzymes, urease and [NiFe]-hydrogenase, for efficient colonization of the human gas
152 ases and ferredoxins from Acetobacterium and hydrogenases, formate dehydrogenase, and cytochromes of
153 FTIR spectro-electrochemistry on the [FeFe] hydrogenase from Chlamydomonas reinhardtii (CrHydA1) at
154 y of these intermediate states in the [FeFe] hydrogenase from Chlamydomonas reinhardtii (CrHydA1), us
155 ic resonance spectroscopy to an [FeFe] model hydrogenase from Chlamydomonas reinhardtii (CrHydA1), we
156 frared difference spectroscopy on the [FeFe]-hydrogenase from Chlamydomonas reinhardtii evaluating dy
157 t FTIR electrochemical studies of the [FeFe] hydrogenase from Chlamydomonas reinhardtii, CrHydA1, mat
163 2 N(Gly) 2 )2 ](2+) complex with the [NiFe]-hydrogenase from Desulfovibrio vulgaris immobilized on a
165 rdinating [4Fe-4S](H) (Cys362) in the [FeFe] hydrogenase from the green algae Chlamydomonas reinhardt
170 uration (100 s), thus indicating that [FeFe]-hydrogenase functions as an immediate sink for surplus e
172 In panel a, the labels 'F420-reducing NiFe hydrogenase (group 3a)' and 'Group 2 NiFe hydrogenase' w
173 lex links a formate dehydrogenase (FDH) to a hydrogenase (H(2)ase) and produces H(2) and CO(2) from f
174 sustain due to 1) competition between [FeFe]-hydrogenase (H(2)ase), the key enzyme responsible for H(
184 f hydrogen oxidation and evolution by [FeFe]-hydrogenases have been investigated by electrochemical i
185 search on the active site cofactor of [FeFe]-hydrogenases have put forward multiple models of the cat
187 w that DosR tightly regulates the two [NiFe]-hydrogenases: Hyd3 (MSMEG_3931-3928) and Hyd2 (MSMEG_271
189 s then used for the maturation of the [FeFe] hydrogenase HydA1 from Chlamydomonas reinhardtii, to yie
191 degradation, the highly O2-sensitive [FeFe]-hydrogenase HydA1 from the green algae Chlamydomonas rei
193 ained, besides a ferredoxin-dependent [FeFe]-hydrogenase (HydA2), a ferredoxin- and NAD-dependent ele
194 nd NAD-dependent electron-bifurcating [FeFe]-hydrogenase (HydABC) that couples the endergonic formati
195 complexes formate dehydrogenase (FdhABC) and hydrogenase (HydABCD) as well as the transcription of th
197 an oxygen-tolerant, group 3, soluble [NiFe]-hydrogenase: hydrogenase I from Pyrococcus furiosus (PfS
198 ystals and Clostridium acetobutylicum [FeFe] hydrogenase I (CaI) enabled light-driven control of elec
199 lerant, group 3, soluble [NiFe]-hydrogenase: hydrogenase I from Pyrococcus furiosus (PfSHI), which gr
200 utative proton donor E17 to Q in the soluble hydrogenase I from Pyrococcus furiosus using site direct
201 data demonstrate that the energy-converting hydrogenase in concert with an ATP synthase may be the s
203 tonia eutropha, which produces active [NiFe]-hydrogenases in the presence of O2, employs the auxiliar
205 igate the progression of O2-dependent [FeFe]-hydrogenase inactivation and the process of H cluster de
207 ot interfere with measurement of first order hydrogenase inactivation, providing rate constants insen
211 pressures, HydS could be a H2-sensing [FeFe]-hydrogenase involved in the regulation of their biosynth
215 allic H-cluster at the active site of [FeFe]-hydrogenases is synthesized by three accessory proteins,
216 e inhibitor of hydrogen production by [FeFe]-hydrogenases, is used to identify the point in the catal
217 monas reinhardtii is catalyzed by two [FeFe]-hydrogenase isoforms, HydA1 and HydA2, both irreversibly
218 bly of the complex 6Fe active site of [FeFe]-hydrogenases (known as the H-cluster) from its precursor
219 way, including two homologs of fdhF encoding hydrogenase-linked formate dehydrogenases (FDHH ) and al
220 uster to bound SAM in the active site of the hydrogenase maturase RS enzyme, HydG, results in specifi
221 lternative pathways in a double mutant pgrl1 hydrogenase maturation factor G-2 is detrimental for pho
223 tem now represented by hydrogen gas-evolving hydrogenase (MBH) where protons are the terminal electro
225 he adjacent Fe-S centers in this O2-tolerant hydrogenase might also be a contributory factor, impedin
227 ld provide important clues for the design of hydrogenase mutants with increased resistance to oxidati
228 his precise, solution phase assay for [FeFe] hydrogenase O2 sensitivity and the insights we provide c
229 doxin directly reduce the bidirectional NiFe-hydrogenase of Synechocystis sp. PCC 6803 in vitro.
231 state known as Ni-L, observed in other NiFe hydrogenases only under illumination or at cryogenic tem
233 ration of the chloroplastic oxygen-sensitive hydrogenases or in Proton-Gradient Regulation-Like1 (PGR
235 nts, or by the progressive activation of the hydrogenase pathway, which provides an electron transfer
237 e of O2, employs the auxiliary protein HypX (hydrogenase pleiotropic maturation X) for CO ligand form
238 sets the stage for optimizing the design of hydrogenase-polymer films, and for expanding this strate
239 ime-dependent distribution of species in the hydrogenase/polymer film, using measured or estimated va
240 erial by expressing and maturing the EcHyd-1 hydrogenase prior to expression of the P22 coat protein,
242 cover new information about bacterial [NiFe]-hydrogenase production and to probe the cellular compone
244 ntrolled hydration of three different [FeFe]-hydrogenase proteins produced 8 Hox and 16 Hox-CO specie
246 actions might affect the hydricity of [FeFe]-hydrogenases, providing a basis for the emulation of the
247 e nor evolution of the gas was detected in a hydrogenase quadruple-mutant strain containing deletions
248 analysis of a series of DFT models of [NiFe]-hydrogenases, ranging from minimal NiFe clusters to very
249 etween ferredoxin-NADP(+) oxidoreductase and hydrogenases, rather than due to the sensitivity of hydr
250 show that the entire pool of cellular [FeFe]-hydrogenase remains active in air-grown cells due to eff
252 ward the discovery of the O2-tolerant [FeFe] hydrogenases required for photosynthetic, biological H2
253 ydrogen-producing and oxygen-tolerant [NiFe]-hydrogenase, sequestered within the capsid of the bacter
255 2)-powered fuel cell with hyper-thermostable hydrogenase (SHI) as the anodic catalyst was combined wi
256 oxygen, and we propose that this new type of hydrogenase should be referred to as oxygen-resilient.
259 Hyd-2 is an unusual heterotetrameric [NiFe]-hydrogenase that lacks a typical cytochrome b membrane a
260 ostridium pasteurianum produces three [FeFe]-hydrogenases that differ in "catalytic bias" by exerting
261 H(2)-metabolizing bacteria possess [NiFe] hydrogenases that oxidize H(2) to subatmospheric concent
263 aches are used to elucidate the mechanism of hydrogenases, the enzymes that oxidize or produce H2.
264 Some of us have recently demonstrated that hydrogenases, the fragile but very efficient biological
268 ode with a bioanode that utilizes the enzyme hydrogenase to oxidize molecular hydrogen (H2 ) results
270 For example, bacteria and archaea use [NiFe]-hydrogenases to catalyze the uptake and release of molec
271 ajor roles in the oxidative damage of [FeFe]-hydrogenases under electron-donor deprived conditions pr
273 nthetic approach by which to model mono-iron hydrogenase using an anthracene framework, which support
274 unprecedented functional model for the [Fe] hydrogenase, using a Lewis acidic imidazolinium salt as
275 of these correlations across a wide range of hydrogenase variants can potentially lead to new insight
280 hemical measurements of the turnover rate of hydrogenase, we could resolve the first steps of the inh
281 cycling by a soluble NAD(+) -reducing [NiFe] hydrogenase, we herein present the first bioinspired het
282 omly mutated Clostridium pasteurianum [FeFe] hydrogenases, we found a mutant with nearly 3-fold highe
283 ding for ATP synthase, biosynthesis, and Hym hydrogenase were down-regulated during C2H2 inhibition,
285 f a so far unknown type of NAD(P)H-accepting hydrogenase, which is expressed in the presence, but not
286 a focus on the catalytic H-cluster of [FeFe] hydrogenase, which is highly active in producing molecul
287 take of the unique [2Fe(H)] cluster into apo-hydrogenase, which is to date not fully understood.
288 functional mimic of the active site of [Fe]-hydrogenase, which was developed based on a mechanistic
289 moieties that form the catalytic centers of hydrogenases, which are thought to be among the earliest
291 s populations appears to be linked with NiFe hydrogenases, which combined with high levels of H2 in m
292 roperties of oxygen-tolerant, group 1 [NiFe]-hydrogenases, which form a single state upon reaction wi
293 etabolism of many anaerobes relies on [NiFe]-hydrogenases, whose characterization when bound to subst
295 ic characterization of a CO-inhibited [FeFe] hydrogenase with a selectively (57)Fe-labeled binuclear
296 reaction of Chlamydomonas reinhardtii [FeFe]-hydrogenase with formaldehyde using pulsed-EPR technique
297 istic understanding of catalysis in a [NiFe] hydrogenase with implications in enzymatic proton-couple
298 ive electron flow from photosystem II to the hydrogenase with the production of H2 and O2 being in th