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1 l-established heuristics based on charge and hydropathy.
2 has led to the use of proxies, most notably, hydropathy.
3 will readily compare data other than protein hydropathy.
4 ase search and pairwise alignment of protein hydropathy.
5  with residues of different charge, size and hydropathy.
6 ition and not molecular volume, polarity, or hydropathy.
7          The resulting changes of charge and hydropathy affected quantitative CQ susceptibility and a
8                                              Hydropathy analyses indicate that all of these transport
9                                              Hydropathy analyses indicate that these proteins contain
10                                 Sequence and hydropathy analyses of GmHSP22, GmHSP22.3, and GmHSP22.5
11  12 transmembrane helices (TMHs), confirming hydropathy analyses of the majority of (prokaryotic and
12                                              Hydropathy analyses suggest that all of these transporte
13 membrane domain models for G6PT predicted by hydropathy analyses.
14 8% predicted from the amino acid sequence by hydropathy analysis (12 membrane-spanning helices) for t
15                      Results consistent with hydropathy analysis are obtained with loops VI/VII, VIII
16                                              Hydropathy analysis indicated that murine and human MRP,
17                                              Hydropathy analysis indicates that the protein is highly
18                                              Hydropathy analysis of FksAp suggests an integral membra
19                                              Hydropathy analysis of KCC1 indicates structural homolog
20                                              Hydropathy analysis of the 355-amino acid mouse SCD1 pro
21                                            A hydropathy analysis of the catalytic domains of differen
22                                              Hydropathy analysis of the deduced amino acid sequence o
23                                              Hydropathy analysis of the deduced amino-acid sequence d
24  of right-side-out vesicles with trypsin and hydropathy analysis of the predicted amino acid sequence
25                                              Hydropathy analysis of the predicted protein and alignme
26                                              Hydropathy analysis of this protein suggests a model in
27                                 In addition, hydropathy analysis predicted FRAG1 to encode an integra
28                                              Hydropathy analysis predicted that CbiB would be an inte
29                                              Hydropathy analysis predicts that the topology of the Ar
30                                              Hydropathy analysis predicts three cysteines (C109, C200
31 ructure prediction of NuoM using the Toppred hydropathy analysis showed that the Q-binding peptide ov
32                                              Hydropathy analysis shows that LHT1 is an integral membr
33                                              Hydropathy analysis suggests that BCRP consists of a nuc
34                                              Hydropathy analysis suggests that human PATCHED is an in
35                             Our sequence and hydropathy analysis suggests that it can form an amphipa
36                                              Hydropathy analysis suggests that there are three transm
37 DTT on membranes were obtained using a novel hydropathy analysis that considers the relative free ene
38 d sixth of these are short, not predicted by hydropathy analysis, do not insert independently into mi
39                                         From hydropathy analysis, rOCT1A is predicted to have 10 tran
40                                As defined by hydropathy analysis, the membrane-spanning segments of t
41                                     Based on hydropathy analysis, we hypothesized that gO could adopt
42 y structure models derived from sequence and hydropathy analysis.
43 lates remarkably well with that predicted by hydropathy analysis.
44 suppositions of structure based primarily on hydropathy analysis.
45 llular space, previously only predicted from hydropathy analysis.
46 nger region than that initially predicted by hydropathy analysis.
47 embrane segments, confirming inferences from hydropathy analysis.
48 sidue-specific interactions due to effective hydropathy and charge.
49                                  Analysis of hydropathy and consideration of the distribution of char
50  on a subset of key properties (aromaticity, hydropathy and isoelectric point).
51 take (-0.92), a moderate correlation between hydropathy and Pf (0.73), and a minimal correlation betw
52 R contents, higher mean net charge and lower hydropathy and prefer to bind to RNA.
53                                              Hydropathy and structural analyses of the open reading f
54 let change-point performs well for smoothing hydropathy and transmembrane profiles generated using di
55 f glucose uptake and Pf (-0.93), and between hydropathy and uptake (-0.92), a moderate correlation be
56 50 to residues of different size, charge and hydropathy, and examined the effects on adenine nucleoti
57  fields, such as electrostatic potential and hydropathy, are smoothed to further reduce visual comple
58 cent studies have highlighted limitations in hydropathy-based models.
59 ane domains was previously proposed based on hydropathy, charge dispersion, and homology to other tra
60  do not change side-chain size, flexibility, hydropathy, charge, or polarizability.
61 a for predicting intrinsic disorder, such as hydropathy, combined with significant net charge, the ve
62 perimental assignments, the empirical charge/hydropathy correlation for the prediction of natively un
63 ce composition space analogous to the charge/hydropathy correlation is observed.
64           Our working hypothesis is that the hydropathy differences in Env associated with IU MTCT al
65    These methods are based on the net charge-hydropathy distribution and disorder prediction score di
66 e; replacements with larger volumes and less hydropathy exhibited higher affinities for glycine.
67 nalyze amphiphilicity using Grand Average of Hydropathy (GRAVY) scores and hydropathy plots.
68 ide range of hydrophobicities (grand average hydropathy (GRAVY) scores of -0.6 to 1.9).
69 ures, isoelectric point and grand average of hydropathy (GRAVY) values of the 7 most abundant protein
70 eractions but differ in the grand average of hydropathy (GRAVY), solubility, and hydrophobic contacts
71 ly significant differences in Kyte-Doolittle hydropathy in the signal peptide, C2, V3, and C3 regions
72                                              Hydropathy index analysis indicated that substitution of
73 ts into a single plot, information about the hydropathy index, Van der Waals volume, chemical propert
74                                 Finally, the hydropathy indexes were obtained to validate the sequenc
75  isoelectric point, sequence length, average hydropathy, low complexity regions (SEG), and combinatio
76 different classification methods, the charge-hydropathy measure and the cumulative distribution funct
77 ne in a manner consistent with the predicted hydropathy model for Na+- and Cl--dependent transporters
78  with the homology model than an alternative hydropathy model of VAChT that likely locates E309 far f
79 S leader caused exclusion of the UL37x1 high-hydropathy mutant from mitochondrial import.
80 s with exceptionally high net charge and low hydropathy near the cytoplasmic end of the central chann
81 L containing human apos is due to the higher hydropathy of human apo A-I, particularly its C-terminus
82 ence descriptors: the number of domains, the hydropathy of terminal domains, and the patchiness (dens
83 esults suggest that the molecular volume and hydropathy of the amino acid at position 288 in TM3 regu
84 ns revealed a strong correlation between the hydropathy of the amino acid at this position and the GA
85 orrelation between DW dynamics and the local hydropathy of the CheY protein surface, empirically dete
86                           However, increased hydropathy of the MTS leader caused exclusion of the UL3
87                        Surprisingly, lowered hydropathy of the UL37x1 MTSalpha, predicted to block ER
88               We conclude that the disrupted hydropathy or charge of residues in the heptad repeat of
89 between anesthetic enhancement and polarity, hydropathy, or hydrophilicity of substituents.
90 acids, relying on net charge per residue and hydropathy parameters.
91 ribes the use of the concept of inversion of hydropathy patterns to the de novo design of peptides ta
92 distribution function (CDF) analysis, charge-hydropathy plot (CH plot) analysis, and alpha-helical mo
93                              Sequence-driven hydropathy plot analysis and in vitro oxidation-induced
94 nsmembrane spanning alpha-helices based upon hydropathy plot analysis of the primary sequence.
95                                              Hydropathy plot analysis predicts the Limulus choline co
96                                 However, the hydropathy plot analysis suggests that PRP does not have
97 id sequence of mdr1b P-glycoprotein, and its hydropathy plot analysis, our data indicated that the 3'
98 ere based primarily on the somewhat atypical hydropathy plot for MerF and related transport proteins.
99                                          The hydropathy plot generated from the deduced amino acid se
100 IDPs and folded proteins in Uversky's charge-hydropathy plot may behave as "marginal IDPs" and sensit
101 e for genomic analysis is the ability of the hydropathy plot method to distinguish membrane from solu
102      QPs3 is a very hydrophobic protein; the hydropathy plot of the amino acid sequence reveals three
103 ural model of SdhC, constructed based on the hydropathy plot of the deduced amino acid sequence of th
104                                          The hydropathy plot of the primary structure of SRII indicat
105                                          The hydropathy plot suggests that ACAT-1 protein contains mu
106                             Using the PHDhtm hydropathy plot, the labeled peptide is located in the t
107 ifs, transmembrane regions, signal peptides, hydropathy plots and profile hits using several popular
108                                              Hydropathy plots are often used in place of missing phys
109 50 1A2c); these all show slightly dissimilar hydropathy plots compared to the MALLLAVFL... sequence.
110                                              Hydropathy plots have problems in identifying the sequen
111 e Ytp1 protein appears by computer analysis (hydropathy plots in conjunction with the combined predic
112                                        Since hydropathy plots indicate that these residues are at the
113                                              Hydropathy plots of CpsA predict an integral membrane pr
114                                              Hydropathy plots of HvCBT1 showed the presence of six pu
115 nty of TM helix prediction by sliding-window hydropathy plots of membrane protein (MP) amino acid seq
116                                              Hydropathy plots of the deduced amino acid sequence of B
117                                          The hydropathy plots of the deduced amino acid sequences sug
118 nsmembrane segments seen in n-block-averaged hydropathy plots while leaving the remaining hydrophobic
119 V) is considerably smaller than predicted by hydropathy plots, extending only from about Val132 to Ph
120 n to be more accurate than the use of charge hydropathy plots, which are frequently used to predict d
121 and Average of Hydropathy (GRAVY) scores and hydropathy plots.
122 ve distribution function analysis and charge-hydropathy plots.
123      In silico analysis (homology searching, hydropathy plotting, and codon usage assessment) strongl
124 ured segments in transmembrane proteins were hydropathy, polarity, and flexibility, and used the resu
125 hat this region of the permease differs from hydropathy predictions.
126                                              Hydropathy profile analysis showed the Eis protein to be
127  which shares a similar transmembrane domain hydropathy profile as well as transporter-specific amino
128                                            A hydropathy profile indicates that HpkA possesses only on
129          In P. aeruginosa, the Snr-1 protein hydropathy profile indicates that it is a soluble protei
130 ochondrial membrane is proposed based on the hydropathy profile of the amino acid sequence, on the pr
131                                            A hydropathy profile of the protein suggests 10 transmembr
132 hu1 cleavability by PI-PLC and its predicted hydropathy profile strongly suggested that Shu1 is a gly
133                    This 26-kDa protein has a hydropathy profile suggestive of a single membrane-spann
134        MPI7 is related in sequence, size and hydropathy profile to mammalian proteins (such as rat PR
135 emical properties, such as molecular weight, hydropathy profile, and predicted secondary structure, a
136   This cDNA encodes 354 amino acids that, by hydropathy profile, could form seven transmembrane domai
137 nt containing an H-domain which, in terms of hydropathy profile, is identical to that of a delta pH-d
138                                              Hydropathy profile-based computer analysis predicted tha
139 rotein and that possesses a nearly identical hydropathy profile.
140                        A comparison of their hydropathy profiles (beta-pattern) with known VDAC seque
141 been proposed based on the similarity of the hydropathy profiles and the homology of sequences betwee
142 d, sharing only 43% identity, although their hydropathy profiles remain remarkably similar.
143 de datasets, including amino acid sequences, hydropathy profiles, gene expression data and known prot
144 ther two primary amino acid sequences or two hydropathy profiles.
145 d secondary predicted protein structures and hydropathy profiles.
146 dings are consistent with a central role for hydropathy rather than size at position 310 of this muta
147  find that an experiment-based whole-residue hydropathy scale (WW scale), which includes the backbone
148                                    Using the hydropathy scale and Martini models, we computationally
149 luble proteins to be MPs, depending upon the hydropathy scale used.
150 that thermodynamic analyses based on current hydropathy scales do not account for the significant and
151  as the commonly used surface area models or hydropathy scales for characterizing biomolecular hydrop
152  Experiment-based whole-residue free-energy (hydropathy) scales for amino acids in unfolded peptides,
153 phobic interface allowed benchmarking of the hydropathy sequence analysis, an important structural ge
154 odes a protein with significant sequence and hydropathy similarity to mammalian acyloxyacyl hydrolase
155         Here, phylogenetic trees and average hydropathy, similarity and amphipathicity plots for memb
156                                  Analysis of hydropathy suggests that in OxlT, the oxalate/formate an
157  that significant variations in polarity and hydropathy values among the Akt isoforms in both the ple
158  including one that differed in polarity and hydropathy, were located in the peak signatures and defi

 
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