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1 alpha-helical segments packed around a small hydrophobic core.
2 eir cargo covalently encapsulated within the hydrophobic core.
3 ively charged head groups at each end of the hydrophobic core.
4 d residues of the protein are trapped in the hydrophobic core.
5 gregation and in organization of the protein hydrophobic core.
6 trimer subunits further associate to form a hydrophobic core.
7 mic cost of exposing charged residues to the hydrophobic core.
8 ative state stabilizing interaction with the hydrophobic core.
9 of ion pairs ( approximately 60,000) in each hydrophobic core.
10 unzips due to the loss of contacts with the hydrophobic core.
11 lobular domain and increased exposure of its hydrophobic core.
12 elical fold that completely buries SA in its hydrophobic core.
13 eract with the protein before disrupting the hydrophobic core.
14 ype of flanking residues at both ends of the hydrophobic core.
15 d T39 by a hydrogen-bond linkage through the hydrophobic core.
16 create desolvated pockets inside the nascent hydrophobic core.
17 for internalization, is fully buried in the hydrophobic core.
18 ed on both faces and the lack of a canonical hydrophobic core.
19 ng of five helices held together by a strong hydrophobic core.
20 fluorophenylalanine (F(5)Phe) residue in the hydrophobic core.
21 k water phase, lipid interface and the lipid hydrophobic core.
22 s organized in a highly ordered bilayer-like hydrophobic core.
23 ability to increase the order of the bilayer hydrophobic core.
24 which one Asp side chain faces the membrane hydrophobic core.
25 rged with nonpolar residues, stabilizing the hydrophobic core.
26 1 even without its proper insertion into the hydrophobic core.
27 away from the solvent to form a central dry hydrophobic core.
28 by hydrophobic interactions into a spherical hydrophobic core.
29 t an evolutionarily invariant residue in its hydrophobic core.
30 nt of the first helix and instability of the hydrophobic core.
31 and compaction of others, most notably, the hydrophobic core.
32 s governed by the formation of a well-packed hydrophobic core.
33 ying the polar Ser side chain in the bilayer hydrophobic core.
34 es and a pair of histidines, and by an inner hydrophobic core.
35 s required for destruction of the receptor's hydrophobic core.
36 signal transfer mechanism in the membrane's hydrophobic core.
37 ptide containing an elongated N-region and a hydrophobic core.
38 n, involving the formation of a well-defined hydrophobic core.
39 self-assembly does not entail formation of a hydrophobic core.
40 is likely mediated by the flexibility in the hydrophobic core.
41 otein size and the flexibility of the native hydrophobic core.
42 drophobic residues into strikingly different hydrophobic cores.
43 ubility, and tailored binding sites in their hydrophobic cores.
44 Greek key beta-sheet folds with well packed hydrophobic cores.
45 onomers to the solvent, while maintaining a "hydrophobic" core.
49 beta (Abeta) protein possessing a structured hydrophobic core and a disordered N-terminal domain (res
50 regions: a positively charged N-terminus, a hydrophobic core and a more polar C-terminal region that
52 o the main fibril axis, where they produce a hydrophobic core and are surrounded by the structurally
53 e partially unfolded structure, exposing the hydrophobic core and backbone hydrogen bond donors and a
57 lymer nanoparticles with lightly-crosslinked hydrophobic core and hydrophilic surface groups are synt
58 ucing Val in place of Cys(93) stabilized the hydrophobic core and increased the RD3 affinity for the
59 s-ms time-scale dynamics of the intra-strand hydrophobic core and interfaces of the fibrils composed
61 results in increased flexibility within the hydrophobic core and loop regions that orient the DNA bi
62 r Leu, respectively, disrupts packing in the hydrophobic core and lowers RD3's apparent affinity for
64 te taken by pumped protons to traverse CcO's hydrophobic core and on whether bacterial and mitochondr
66 elin octanoyl chain is essential to form the hydrophobic core and promote access of ghrelin to the re
67 amma-zein family are arranged in the central hydrophobic core and the cross-linked protein body perip
69 ferent alkyl linker lengths separating their hydrophobic core and the hydrophilic carboxylate headgro
74 s driven by the lipid-facing residues in its hydrophobic core, and its NC-IN topology is determined b
75 rtain glycan mutants, mutations in the gp120 hydrophobic core, and mutations in residues involved in
76 ted by interactions arising from the central hydrophobic core, and precipitated by those arising from
78 is buried in the beta4-strand in the central hydrophobic core, and the Tyr structurally links to the
79 bility and cooperativity can occur without a hydrophobic core, and without alpha-helices or beta-shee
81 cycles lack regular secondary structures and hydrophobic cores, and can contain local structures not
84 g residence urea molecules placed around the hydrophobic core are crucial to stabilize partially open
85 results reveal that dynamics in the extended hydrophobic core are important for binding site selectio
87 R measures, the aliphatic side chains in the hydrophobic core are slightly more dynamic in the free p
89 light the calcium-binding loop (R1597W), the hydrophobic core around the vicinal disulfide (M1528V),
90 NIPAm) (pNIPAm), held above its LCST, formed hydrophobic cores around which shells composed of NIPAm,
91 ining proteins, including a long loop region hydrophobic core associated with calcium-dependent glyca
93 Thus, with increasing temperature, first the hydrophobic core awakens, followed by the hydrophilic su
94 ins much to be learnt about how and when the hydrophobic core becomes desolvated and tightly packed d
95 the cyclohexane ring buried within the gp120 hydrophobic core but able to assume multiple orientation
96 es sequesters elongating products within its hydrophobic core, but this dynamic mechanism remains poo
100 tion of Abeta25-35 peptides into the bilayer hydrophobic core causing more pronounced disruption in i
101 The peptoid nanotubes form without a central hydrophobic core, chirality, a hydrogen bond network, an
102 0'), I84 (I84'), and V82 (V82') which create hydrophobic core clusters to further stabilize the close
104 ic reveals that the left arm forms a concise hydrophobic core comprising tryptophans Trp(21) and Trp(
105 barstar forms a partially solvent-accessible hydrophobic core consisting of several residues that hav
106 r the synthesis of hybrid micelles with PPhe hydrophobic core, cross-linked ionic PGlu intermediate s
107 ein, including the side-chain packing in the hydrophobic core, denatures in a single cooperative proc
108 nd that polar interactions buried within the hydrophobic core determine the specificity of heterodime
109 GAA hairpin reveals that dynamics within the hydrophobic core differentiate between specific and nons
110 lices, and the side-chain packing within the hydrophobic core differs fundamentally from the knobs-in
111 shells of the cationic nanoparticles and the hydrophobic core domain of the anionic central cylindric
116 -benzoxadiazole (NBD) donors that occupy the hydrophobic core, followed by exposure to hydrophilic Rh
117 he voltage sensor domain translates across a hydrophobic core forming a barrier for the gating charge
119 that destabilize the packing of the domain's hydrophobic core have little effect on folding within th
121 uM) and K162 (EC(50) = 0.080 muM), stabilize hydrophobic core I of Abeta(42) peptide (residues 17-21)
122 e importance, this phenomenon indicates that hydrophobic core I of the Abeta(42) peptide plays a majo
123 a unique spatial arrangement that caught the hydrophobic core in a cage, thereby protecting it fully
125 hydrophobic cluster and another delocalized hydrophobic core in the folding kinetics, are discussed.
127 P14 residue retains an interaction with the hydrophobic core in the intermediate state but is releas
128 viously, it is attenuated in Pol lambda by a hydrophobic core including Leu431, Ile492, and the Tyr50
129 at the slower structural fluctuations in the hydrophobic core, indicating a more tightly structured c
130 aggered by only 4 amino acids and displaying hydrophobic core interactions similar to those of the pa
131 ation promotes drug release by switching the hydrophobic core into completely hydrophilic chains.
132 ular hydrophilic patterning of its otherwise hydrophobic core is a prerequisite for the TolA-induced
133 determinants of DNA binding, whereas the RHH hydrophobic core is assembled from amino acids in both t
134 ate with the fourth arginine in S4 above the hydrophobic core is destabilized by approximately 17 kJ/
135 -coil are stabilized by Leu-110, whereas the hydrophobic core is destabilized in the SCR by Ala resid
137 have shown that a glycine-rich motif in its hydrophobic core is essential for selective, aSec-mediat
138 mall, de novo-designed proteins in which the hydrophobic core is packed with various combinations of
141 on of E9, which has sparse contacts with the hydrophobic core, is linked to an allosteric activator r
142 s of two leucine residues that belong to the hydrophobic core (L17 and L34) as well as M35 residues b
143 UVF was highly dynamic because of its fully hydrophobic core, leading to a smaller loss of entropy u
144 e investigate methyl group dynamics of a key hydrophobic core leucine residue in chicken villin headp
147 on the surface of the protein as well as the hydrophobic core maintaining the structural integrity ar
153 eously mutate all methionines present in the hydrophobic core of a spidroin NTD from a nursery web sp
154 Of note, crenezumab also sequesters the hydrophobic core of Abeta and breaks an essential salt-b
156 own (1)O2 scavenger, was incorporated in the hydrophobic core of amphiphilic copolymer micelles, and
159 m infrared results reveal an ordering of the hydrophobic core of bilayers when leakage is noted, i.e.
161 N-terminus of the peptide backbone near the hydrophobic core of cylindrical nanofibers leads to stro
163 active chromanol moiety residing deep in the hydrophobic core of di-14:0PC bilayers, a location that
165 channels are separated by ~6 angstrom in the hydrophobic core of F(o), resulting in a strong local fi
168 ix DNA-binding domain (GTL1N) destabilizes a hydrophobic core of GTL1N and allosterically inhibits 3(
169 issense mutations disrupt the folding of the hydrophobic core of hCDC73-NTD, while others such as the
170 show here that the P2204L mutation impairs a hydrophobic core of Ig20, generating a conformationally
171 s not affect methyl group motions within the hydrophobic core of individual cross-beta subunits but h
172 ne-conjugated acyl-group of ACP occupies the hydrophobic core of ISD11, explaining the basis of ACP s
173 rved, charged Asp-137 residue located in the hydrophobic core of its coiled-coil structure, which is
174 ile procedure is used for reconstituting the hydrophobic core of LDLs with a binary fatty acid mixtur
179 (NCBD), we have compared the dynamics of the hydrophobic core of NCBD in the ligand-free state and in
183 ted-chitosan-zinc-insulin complexes into the hydrophobic core of PLA-PEG-PLA thermogel-copolymer mice
184 arily occurs by solvent penetration into the hydrophobic core of proteins in a sequence-independent m
185 ged side chains can be buried readily in the hydrophobic core of stable proteins without the need for
186 An artificial charge pair buried in the hydrophobic core of staphylococcal nuclease was engineer
187 in Su(H) by interacting with residues in the hydrophobic core of Su(H), illustrating the structural p
188 n the NP surface interact favorably with the hydrophobic core of the bilayer structure and guide the
190 mide, with the interior water present in the hydrophobic core of the confined micellar medium in aque
192 t after the rapid dimerization reaction, the hydrophobic core of the dimer interface has few fully na
193 tate and N(2); however, only residues in the hydrophobic core of the dimer interface perturbed the I(
194 gn of the N-terminus were used to expand the hydrophobic core of the domain, and in the third case, t
195 of this enzyme and likely interacts with the hydrophobic core of the endoplasmic reticulum membrane.
196 hrough JMJD6 interactions with the conserved hydrophobic core of the ET domain, and reinforced by ele
197 s reveals dynamical perturbations within the hydrophobic core of the folded domain, which are attribu
199 The two [4Fe-4S] clusters are located in the hydrophobic core of the helical bundle as characterized
201 single alanine mutation at Tyr507 within the hydrophobic core of the isolated colicin E3 rRNase domai
204 (1) allow the sodium ion to pass through the hydrophobic core of the membrane and (2) provide cation
205 of an organic solvent layer to represent the hydrophobic core of the membrane and short-tailed phosph
206 Delta5 isoform was more integrated into the hydrophobic core of the membrane than the FL isoform.
207 the 7-transmembrane (TM) bundle towards the hydrophobic core of the membrane, one between TM1/TM7 an
212 s were encapsulated noncovalently inside the hydrophobic core of the micelle, which was composed of l
216 alpha-Syn100 variant in which we removed the hydrophobic core of the non-amyloid component (NAC) doma
218 previously been shown to bind in the central hydrophobic core of the pore region of the channel, and
219 ) did equalize rates without eliminating the hydrophobic core of the protein (i.e., without unfolding
220 The VP40 SDP Q245P affects the structure and hydrophobic core of the protein and consequently protein
222 sence of distinct residues buried within the hydrophobic core of the RelB dimerization domain appears
225 eals that a majority of mutations affect the hydrophobic core of the structure, indicating that most
227 75 p.M393T creates a polar side-chain in the hydrophobic core of the transmembrane, which could desta
228 bability of observing water molecules in the hydrophobic core of these lipid membranes and their prot
231 goal of investigating dynamical features of hydrophobic cores of proteins over a wide range of tempe
232 ERGDS sequences on the exterior surfaces and hydrophobic cores of self-assemblies, the nanoparticles
234 Since reactions take place within the inner hydrophobic cores of these tailor-made nanoreactors, and
236 on of the UBL results from rearrangements to hydrophobic core packing that modify its structure.
238 hored to the helical scaffold by a secondary hydrophobic core, pinning down the long loops of leptin
239 f a stabilizing Leu residue in a coiled-coil hydrophobic core position d that causes this dramatic ef
240 ix-breaking mutations in the signal sequence hydrophobic core prevent synthesis of the aberrant prote
241 ne-386 at the center of ER46's transmembrane hydrophobic core prevents membrane spanning, obscures th
243 site and turns the side chain of M513 into a hydrophobic core, providing a basis to understand how Ca
244 t permeation occurs by diffusion through the hydrophobic core rather than through hydrophilic pores.
247 nding residues are sequestered back into its hydrophobic core, releasing sigma(R) to activate transcr
250 e chain shifts the structure and dynamics of hydrophobic core residues of the protein so that these r
251 ervation analysis confirms the importance of hydrophobic core residues that stabilize the beta-trefoi
254 /F77A-AT(1) receptor, designed to weaken the hydrophobic core, showed significant agonist-induced sig
255 ese structures reveal a solvent-sequestered, hydrophobic core stabilized by a unique arrangement of l
256 catalytic activity through interactions with hydrophobic core structures (beta1, beta3, alpha5, and a
257 ty shows high flexibility inside the bilayer hydrophobic core, suggesting its potential role as a ten
258 by a specific group of residues which form a hydrophobic core surrounding the oxyferryl heme center.
259 een two molecular moieties, for the micellar hydrophobic core, tends to expose a reacting fragment di
260 ing force for assembly is the formation of a hydrophobic core that excludes water, whereas the hydrop
261 concerted structural changes in the extended hydrophobic core that govern binding of helix alpha1 to
262 an independent domain but forms part of the hydrophobic core that joins the two beta-propellers.
263 del in which the regulatory sequences form a hydrophobic core that reciprocally inhibits DNA binding
264 nosorbent assay (ELISA) results identified a hydrophobic core that stabilizes the V2 region for optim
265 and arranged in a manner that generates two hydrophobic cores that are capped at the end of the chai
266 ray structures for three small proteins with hydrophobic cores that are packed with either fluorocarb
267 vel and perhaps more protein-like folds with hydrophobic cores that in turn allow them to access nove
268 nds are often found to depend on well-packed hydrophobic cores that influence the distance between th
269 ved along the peptide backbone away from the hydrophobic core, the interactions with dodecanoic acid
270 s that Ala-40 contributes to an intrasubunit hydrophobic core, the principal effect of the A40V mutat
271 espite the large thickness mismatch in their hydrophobic cores, the hybrid membranes do not exhibit m
272 a" positions or all the "d" positions of the hydrophobic core, thereby creating an alternating packin
273 By localizing the sensor components in a hydrophobic core, these nanosensors are able to monitor
274 This protein is assumed to bind the membrane hydrophobic core through a transmembrane domain (TMD) as
275 beta(9-40) fibril suggest formation of tight hydrophobic core through M35 interactions across the fib
276 of DeltaN6 reveals a major repacking of the hydrophobic core to accommodate the nonnative peptidyl-p
279 incoming peptide and can penetrate into the hydrophobic core to disrupt the Asp23-Lys28 salt bridges
280 example, we instruct the computer "to form a hydrophobic core," "to form good secondary structures,"
283 binding site has been incorporated into the hydrophobic core using natural amino acids, restricting
285 o investigate the contributions of the fully hydrophobic core versus the fully polar surface to UVF's
286 l, polar groups were introduced into the Im7 hydrophobic core via Val-->Thr or Phe-->Tyr substitution
287 alue, less dense hydrophilic corona and more hydrophobic core volume are efficient in solubilising an
289 To further investigate the effect of this hydrophobic core, we disrupted it in Galphai1 by inserti
291 rtion of cysteine residues or changes in the hydrophobic core were associated with greater difference
292 any MHR residues that are not in the protein hydrophobic core were nevertheless found to be critical
294 d NA activities map predominantly to the 4HB hydrophobic core, whereas mutations that affect only F-p
295 leaving the Asp side chain shielded from the hydrophobic core, which is also consistent with availabl
296 eed, in Az48W the radical is embedded in the hydrophobic core while, in ReAz108W it is solvent-expose
297 d reference dyes are encapsulated inside the hydrophobic core, while a pH-sensitive probe is covalent
298 lyzed hydration of an alkyne proceeds in the hydrophobic core, while the Rh-catalyzed asymmetric tran
299 he protein displays a well organized compact hydrophobic core with structural changes confined to the
300 tal results revealed that, through forming a hydrophobic core with the conserved SAT motif of the N-t