ライフサイエンスコーパス: identifier

1 ta were linked via patients' unique personal identifier.

2 species, family and clan has its own unique identifier.

3 eferences and Immune Epitope Database (IEDB) identifier.

4 n a separate entry assigned a stable, unique identifier.

5 ence of activated ARFs and specific membrane identifiers.

6 ntries with the corresponding authors' ORCID identifiers.

7 d linked national wealth by country and year identifiers.

8 to perform reverse target lookups using gene identifiers.

9 passport information and unmatched accession identifiers.

10 ecialized barcodes, such as unique molecular identifiers.

11 taxon names, taxon identifiers, or sequence identifiers.

12 for counting the number of unique molecular identifiers.

13 nce Read Archive (SRA) via unique persistent identifiers.

14 d take in the design, provision and reuse of identifiers.

15 ort, academic degrees obtained, and personal identifiers.

16 rmalized to 11 755 unique cell line database identifiers.

17 r a pathogen serovar and for genome sequence identifiers.

18 multiphasic CT images blinded to the patient identifiers.

19 volume was calculated using unique hospital identifiers.

20 ical record databases using encoded personal identifiers.

21 used to match source identifiers with target identifiers.

22 ene are assigned unique, tracked integers as identifiers.

23 erging technologies that use single-molecule identifiers.

24 ic reads, associated quality values and read identifiers.

25 ulary with over 1700 new terms and accession identifiers.

26 tion of glycan collision cross section (CCS) identifiers.

27 y or Kyoto Encyclopedia of Genes and Genomes identifiers.

28 Trial Registration: eudract Identifier 2005-003463-23.

29 clinicaltrialsregister.eu Identifier: 2008-001384-11.

30 er Studien Identifier: DRKS00003252; EudraCT Identifier: 2011-005603-32/DE.

31 EudraCT Identifier: 2016-004236-38; ISRCTN identifier: 97503221.

32 EudraCT Identifier: 2016-004236-38; ISRCTN identifier: 97503221.

33 anzctr.org.au Identifier: ACTRN12608000173392.

34 ralian New Zealand Clinical Trials Registry, Identifier ACTRN12611000402943.

35 ralian New Zealand Clinical Trials Registry, identifier ACTRN12611000402943.

36 anzctr.org.au Identifier: ACTRN12613000039785.

37 anzctr.org.au Identifier: ACTRN12613000236796.

38 Unique Identifier: ACTRN12613001302741.

39 Unique identifier: ACTRN12615001379505.

40 anzctr.org.au Identifier: ACTRN12616000481471.

41 coding criteria, and completeness of patient identifiers, admission, procedure, discharge and death d

42 Addition of unique molecular identifiers allows identification and removal of errors

43 clude changes to policies regarding sequence identifiers, an improved 16S submission wizard, targeted

44 tabase can be searched by PDB entry, cluster identifier and IMGT germline group (e.g. human IGHV1).

45 Each seed is tracked by an identifier and, after phenotyping, can be planted, sorte

46 nodes annotated with NCBI numbers or UniProt identifiers and (optionally) Protein Data Bank structure

47 , WebGestalt supports 12 organisms, 342 gene identifiers and 155 175 functional categories, as well a

48 rocedure, but 80-83% completeness of patient identifiers and date related items.

49 Packaging signals serve as segment identifiers and enable segment-specific packaging.

50 OCT cube scans were stripped of all clinical identifiers and exported.

51 for read families based on unique molecular identifiers and filtering false positive variant calls c

52 l, and substance use disorders with location identifiers and socioeconomic correlates published betwe

53 ructural features were devised as riboswitch identifiers and tested on Bacillus subtilis, Escherichia

54 ccessfully removes batches related with mice identifiers and the date of the experiment, while preser

55 e command-line tool for converting molecular identifiers and their contained loci and variants betwee

56 iBioProVis tool takes target protein identifiers and, optionally, compound SMILES as input, a

57 For each ancestral gene, we assign a stable identifier, and provide additional information designed

58 adings, using both KEGG and PubChem compound identifiers, and based on statistical tests for associat

59 clinical data using encrypted unique client identifiers, and data are processed and de-duplicated to

60 ntification of DSBs through unique molecular identifiers; and (4) easy scalability and multiplexing.

61 s and mortar that make integration possible; identifiers are a core component of this integration inf

62 Two important identifiers are phosphoinositides and GTP-bound GTPases,

63 ational drug codes and RxNorm unique concept identifiers as information content entities, and of the

64 i.e., conformational isomers) using chemical identifiers as input, from which collision cross section

65 dical Birth Register using a unique 10-digit identifier assigned to all live births and new residents

66 Unique Identifier: Australian New Zealand Clinical Trials Regis

67 We present an approach to inclusion of tract identifiers based on multiply imputed, synthetic data.

68 h them is not merely based on class names or identifiers but rather on the knowledge the ontologies c

69 ll molecules are defined by PubChem Compound Identifiers (CIDs); ligand capture also includes peptide

70 We develop molecular identifier clustering-based immune repertoire sequencing

71 A PyMOL file, PDB file, PDB identifier code or protein/gene name can be provided to

72 is a web-based tool developed to facilitate identifier conversion and data integration for Homo sapi

73 In addition to providing a robust means of identifier conversion, BRM also incorporates a suite of

74 linked this information to National Provider Identifier data, identified a set of distinct provider n

75 the webserver interface to DNA Binding Site Identifier (DBSI), a powerful structure-based SVM model

76 ts and database records, aggregating sets of identifiers denoting the same biomedical concepts across

77 ecies hypotheses and assigned digital object identifiers (DOIs) to promote unambiguous reference acro

78 Deutsches Register Klinischer Studien Identifier: DRKS00003252; EudraCT Identifier: 2011-00560

79 German Clinical Trials Register identifier DRKS00004619.

80 n by identifier, where users cite persistent identifiers (e.g. DOIs, PubMed IDs, ISBNs, URLs), whose

81 final prognostic model (Early Severe Dengue Identifier [ESDI]) included history of vomiting, platele

82 Unique identifier: EudraCT 2012-005592-13.

83 tential of DTIM-MS for providing a molecular identifier for a broad range of discovery based analyses

84 Here, we present GRIBCG (Guide RNA Identifier for Balancer Chromosome Generation), a tool f

85 kely to use their own International Resource Identifier for conceptually the same resource or databas

86 e propose mirPLS, a Partial Linear Structure identifier for miRNA data that simultaneously identifies

87 We also report the creation of systematic identifiers for C. albicans genes and sequence features

88 as HGVS nomenclature for variants and MedGen identifiers for conditions.

89 atabase wherein national transplant registry identifiers for kidney transplant recipients were linked

90 We examined a database linking U.S. registry identifiers for living kidney donors (1987-2007) to bill

91 ssue fragment may determine unique molecular identifiers for specific organs and demonstrate unique p

92 e organelle to another, recognizing specific identifiers for the donor and acceptor membranes.

93 ugh the identification of specific molecular identifiers for the generation of transgenic mice.

94 that combines Tn5 transposase and molecular identifiers for the highly accurate sequencing of amplic

95 ent updates include an expansion of sequence identifier formats to accommodate expected database grow

96 However, these identifiers frequently overlap among the different asthm

97 ding disparate biological currency-molecular identifiers from different databases.

98 Gestalt 2017 supports 12 organisms, 324 gene identifiers from various databases and technology platfo

99 le criteria, e.g. metalloenzyme name, ligand identifier, functional class, bioinorganic class, metal

100 to treatment assignment by the use of unique identifiers generated during randomisation.

101 expression of consensus molecular subtype-4 identifier genes also exhibited high lymphangiogenic gen

102 To date, tract identifiers have been left off the research files becaus

103 Reaction and metabolite identifiers have been standardized across models to conf

104 The mean amount received per physician identifier (ID) was $1108 (range, $1-$397 849), and the

105 ta principles by providing (i) SIGNOR stable identifiers, (ii) programmatic access through REST APIs,

106 out using information about unique molecular identifiers) improved upon the repertoires constructed b

107 blood eosinophilia as second most important identifier in principal component analysis.

108 The first step, finding out whether an identifier in the user's sample corresponds to an entity

109 nstrate how historic information about these identifiers in DrOn can be easily retrieved using a simp

110 icle, the authors mistakenly included sample identifiers in the form of UMCGs rather than UMCG IBDs i

111 We focus strongly on web-based identifiers in the life sciences; however, the principle

112 portant considerations for those referencing identifiers in various circumstances, including by autho

113 Classic supercooled liquids exhibit specific identifiers including microscopic relaxation times diver

114 networks may be related to complex personal identifiers, including health, age, and ability.

115 We demonstrate the utility of this identifier integration approach by answering queries acr

116 As with any molecular identifier, interlaboratory standardization must precede

117 The lack of correspondence between identifiers introduces a barrier when executing federate

118 Unique identifier: ISRCTN 11764506.

119 opathic arthritis associated uveitis) trial (identifier, ISRCTN10065623) of methotrexate (up to 25 mg

120 ISRCTN Identifiers: ISRCTN97555949 and ISRCTN97108008.

121 has the capability to perform cross-species identifier lookups across common identifier types, direc

122 cies definition: the MiSI (Microbial Species Identifier) method, be used to address previous inconsis

123 tries and are given unique, stable six-digit identifiers (MIM numbers).

124 Unique identifier: NCT 02321618.

125 NRG Oncology/RTOG 9802 (ClinicalTrials.gov Identifier: NCT00003375) is a practice-changing study fo

126 th LS.Trial Registration Clinical Trials.gov Identifier: NCT00004210.

127 Unique identifier: NCT00069784) participants (N=4147) and combi

128 Unique identifiers: NCT00094302 and NCT00095238.

129 Unique identifier: NCT00180271, NCT01294449, and NCT02060110.

130 Unique identifier: NCT00190398 (EVA-3S), NCT00004732 (CREST), I

131 homa (MCL) Elderly trial (ClinicalTrials.gov identifier: NCT00209209), published in 2012, we aimed to

132 Unique identifiers: NCT00209274, NCT01940120, and NCT01931956.

133 The ALCL-Relapse trial (ClinicalTrials.gov identifier: NCT00317408) stratified patients according t

134 a phase 1 vaccine trial (ClinicalTrials.gov identifier NCT00500747) and compared them with serum or

135 Unique identifiers: NCT00530894 (PARTNER 1), NCT01314313 (PARTN

136 thods The COPDGene study (ClinicalTrials.gov identifier: NCT00608764) is an ongoing prospective longi

137 5, ELM-PC-4, and COMET-1- ClinicalTrials.Gov identifiers: NCT00638690, NCT00974311, NCT01193257, NCT0

138 Unique identifiers: NCT00660179 and NCT00370214.

139 n this prospective study (ClinicalTrials.gov identifier: NCT00749320), metastatic RCC perfusion was m

140 teria of the D2201 study [ClinicalTrials.gov identifier NCT00782067]), QOL and symptom burden were as

141 lled in the HD 0607 trial (Clinicaltrial.gov identifier NCT00795613), with both a negative PET after

142 Unique identifiers: NCT00800137, NCT01675076.

143 Unique identifier: NCT00853658, NCT01035255.

144 feriority DBCG HYPO trial (ClincalTrials.gov identifier: NCT00909818) was designed to determine wheth

145 A France phase III study (ClinicalTrials.gov identifier: NCT00958737) investigating the duration of a

146 Unique identifier: NCT01004406 and NCT02347098.

147 Unique identifiers: NCT01107886 and NCT01730534.

148 Unique identifiers: NCT01173341; AAML1031; NCT01371981.

149 Unique identifier: NCT01175850 (IN.PACT SFA phase I) and NCT015

150 Unique identifiers: NCT01206062; NCT00000620.

151 Unique identifiers: NCT01314313, NCT02184442, NCT03222128, and

152 Unique identifier: NCT01740479s.

153 Unique identifiers: NCT01749878 and NCT02107872.

154 s This prospective trial (ClinicalTrials.gov identifier: NCT02022579) enrolled consecutive women (fro

155 Unique identifiers: NCT02110303 and NCT02278211.

156 Unique identifiers: NCT02110524, NCT01858363, NCT01858428, NCT0

157 Registered with clinicaltrials.org registry (identifier; NCT02233491).

158 roma and Spectri studies (ClinicalTrials.gov identifiers, NCT02247479 and NCT02247531, respectively)

159 om our pilot clinical trial (clinical trials identifier NCT02285192) in 23 patients with uterine or c

160 xiety.Trial Registration: clinicaltrials.gov Identifier: NCT02427568, first registered April 28, 2015

161 of COPD (COPDGene) study (ClinicalTrials.gov identifier: NCT02445183) between 2008 and 2011 had their

162 Clinical trial identifier: NCT02467348.

163 T number: 2014-002086-30; ClinicalTrials.gov identifier: NCT02560220.FUNDINGFederal Ministry for Econ

164 allel phase I/II studies (ClinicalTrials.gov identifiers: NCT02690545 and NCT02917083) at 2 independe

165 Unique identifier: NCT02825992 EU/NCT02462980 CN.

166 Unique identifier: NCT02838680 (RADIANT-Canada); NCT02799823 (R

167 (Clinicaltrial.gov Identifier: NCT02861261).

168 open-label phase 2 study (ClinicalTrials.gov identifier: NCT02953678), patients aged at least 12 year

169 n the PROMeNADe registry (ClinicalTrials.gov identifier: NCT03081364) and underwent a total of 608 MR

170 ase II multicenter trial (ClinicalTrials.gov identifier: NCT03135769), women with GTT who experienced

171 Unique identifier: NCT03263702; IDE#G170049.

172 Unique identifiers: NCT03476785 and NCT02039154.

173 Unique identifiers: NCT03616002 and NCT03067701.

174 uality improvement study (ClinicalTrials.gov identifier: NCT04277650), 963 outpatient adult courses o

175 ClinicalTrials.gov identifier: NCT04318366.FUNDINGIRCCS Ospedale San Raffae

176 ed dose-escalation study (ClinicalTrials.gov identifier NCT04368728) among 45 healthy adults (18-55 y

177 identifier: NL34509.000.10 and trialregister.nl identifi

178 Omics data with gene identifiers not supported by WebGestalt and functional c

179 Netherlands Trial Registry Identifier: NTR2249.

180 Netherlands National Trial Register Identifier: NTR2768.

181 ntifier: NL34509.000.10 and trialregister.nl identifier: NTR3103.

182 that can obfuscate their meaning when these identifiers occur in historic data.

183 ROC analysis identified RBP4 as a sensitive identifier of ATTR V122I amyloidosis (area under the cur

184 sation was by SX number, a sequential unique identifier of each woman within the NHSBSP, and at the b

185 , a positive (18)F-FDG PET scan was the only identifier of high risk for death (hazard ratio: 3.6; 95

186 as the role of the cap 2'O methylation as an identifier of self RNA in the innate immune system again

187 pothesized that CGRP may provide a molecular identifier of the CO2 arousal circuit.

188 amino acid-substituted GTPase RbgA and is an identifier of the translational GTPase family.

189 behavior, providing cellular and anatomical identifiers of behavioral and possible therapeutic signi

190 Over the past 20 years, various identifiers of cellular senescence have been used to qua

191 ifts, and pRF scaling in SPZs are not unique identifiers of cortical reorganization; rather, they can

192 In the research setting, positive identifiers of FCD will enhance our recognition of indiv

193 acing by detection of variable TCR region as identifiers of individual lymphocyte clones.

194 enitor spermatogonial transition and precise identifiers of subtypes in the process are undefined.

195 An accurate model of how these identifiers operate in reality is a valuable addition to

196 able to retrieve all annotations for a given identifier or a range of coordinates in a few seconds (w

197 adding articles manually via digital object identifier or PubMed ID.

198 xample, barcoding techniques (i.e. Multiplex Identifiers or Indexing) use short oligonucleotides to d

199 y be searched using keywords, PDB or Uniprot identifier, or browsed using classification systems, suc

200 axonomic classifications, taxon names, taxon identifiers, or sequence identifiers.

201 data are not linked to demographic or social identifiers, or to information about the disease status

202 uses the identifier patterns defined in the Identifiers.org Registry to generate a plurality of iden

203 common and rare disease concepts with stable identifiers organized by disease etiology.

204 This service uses the identifier patterns defined in the Identifiers.org Regis

205 Unique personal identifiers permitted unambiguous data linkage and compl

206 Specifically, we propose actions that identifier practitioners (database providers) should tak

207 areness about how to avoid and manage common identifier problems, especially those related to persist

208 reference them in publications by the unique identifier provided by RDMLdb.

209 d are available via ProteomeXchange with the identifier PXD000759.

210 le through ProteomeXchange with the data set identifier PXD000906.

211 data are available via ProteomeXchange with identifier PXD001062.

212 been deposited with the ProteomeXchange with identifier PXD001333.

213 data are available via ProteomeXchange with identifier PXD001555.

214 Data are available via ProteomeXchange with identifier PXD001845.

215 (data are available via ProteomeXchange with identifier PXD002762).

216 s been deposited to the ProteomeXchange with identifier PXD003024.

217 data are available via ProteomeXchange with identifier PXD004219.

218 Data are available via ProteomeXchange with identifier PXD004529.

219 Data are available via ProteomeXchange with identifier PXD004749.

220 hiometry (available via ProteomeXchange with identifier PXD005903) and set the stage for further biol

221 Data are available via ProteomeXchange with identifier PXD005987.

222 Data are available via ProteomeXchange with identifier PXD006042.

223 Data are available via ProteomeXchange with identifier PXD006131.

224 Data are available via ProteomeXchange with identifiers PXD007236, PXD007267, and PXD007268.

225 Data are available via ProteomeXchange with identifier PXD010226.

226 a are available through ProteomeXchange with identifier PXD010760.

227 e been deposited to the ProteomeXchange with identifier PXD012257.

228 ial for improving detection (ProteomeXchange identifier PXD012355).

229 data are available via ProteomExchange with identifier PXD013986.

230 data are available via ProteomeXchange with identifier PXD014458.

231 data are available via ProteomeXchange with identifier PXD015178.

232 osited to ProteomeXchange, with the data set identifier PXD019597.

233 Data are available via ProteomeXchange with identifier PXD020824.

234 data are available via ProteomeXchange with identifier PXD021730.

235 outline 10 lessons we have learned about the identifier qualities and best practices that facilitate

236 ters, a shift toward using accession.version identifiers rather than GI numbers, a wizard for submitt

237 ets across platform or species by performing identifier retrievals in the background, and retrieve mi

238 analysis tools, such as the Resistance Gene Identifier (RGI) for resistome prediction from raw genom

239 d prediction, such as CARD's Resistance Gene Identifier (RGI) software.

240 We demonstrate this using a unique molecular identifier RNA-sequencing pipeline consisting of 3 steps

241 ney stones and associated RadLex(R) Playbook identifiers (RPIDs) were retrospectively identified.

242 We discuss here the use of Research Resource Identifiers (RRIDs) as one tool to help resolve this tri

243 hors were asked to include Research Resource Identifiers (RRIDs) in their articles prior to publicati

244 Research Resource Identifiers (RRIDs) should reduce the prevalence of misi

245 drug codes (NDCs) and RxNorm unique concept identifiers (RXCUIS) can undergo changes over time that

246 Here, we present Sub-Compartment Identifier (SCI), an algorithm that uses graph embedding

247 moving toward shared data formats and linked identifiers, significant problems persist in semantic da

248 We propose the SNP Interaction Pattern Identifier (SIPI), which tests 45 biologically meaningfu

249 The data are searchable using standard identifiers, such as UniProt, ChEBI and GO IDs, protein,

250 We present SciBet, a supervised cell type identifier that accurately predicts cell identity for ne

251 d an iterative system where a unique DNA tag identifier that encoded the event was appended to each n

252 a robust approach based on unique molecular identifiers that allows profiling Ag receptors for sever

253 ding the data analysis with unique molecular identifiers that are critical for accurate counting of s

254 ciples by providing complex-specific, stable identifiers that include versioning.

255 We further show, using unique molecular identifiers, that stochastic capture of low input RNA ra

256 Each patient has a unique ten-digit identifier, the Community Health Index, enabling us to l

257 eam applications that require converting the identifiers themselves, there are many resources availab

258 No identifier to predict learning ability was observed.

259 RSC allocates a unique identifier to strains recommended for use in diagnosis a

260 The internal mapping of unique gene symbol identifiers to canonical gene symbols allows for an ambi

261 Here, using key identifiers to characterize neural arrangements, we demo

262 to allow searching for interactions by drug identifiers to complement existing gene-based search fun

263 with normalization based on unique molecular identifiers to explore the long-term dynamics of T cell

264 rsioned with full histories and carry unique identifiers to facilitate reproducible research.

265 wever, the inability of common spectroscopic identifiers to register the events of transmembrane tran

266 en pathway is defined with a standard set of identifiers to support linking to several other biologic

267 Mapping PubChem compound identifiers to the PubMed database yielded 49,940 unique

268 ling approach, SID (Saccharomyces cerevisiae IDentifier), to identify the strains present in complex

269 Translation System, which allows metabolite identifier translation between >200 common biochemical d

270 nd a cross-organism search; and a metabolite identifier translation service.

271 oss-species identifier lookups across common identifier types, directly integrate datasets across pla

272 l barcode identification or unique molecular identifier (UMI) deconvolution are necessary for preproc

273 different read-alignment or unique molecular identifier (UMI) deduplication methods has not been wide

274 de detection, read mapping, unique molecular identifier (UMI) deduplication, gene count estimation, a

275 iased molecular technique - unique molecular identifier (UMI) library-based strategy to investigate w

276 NA-based method and two non-unique molecular identifier (UMI) RNA-based methods were more sensitive t

277 tures with deduplication of unique molecular identifier (UMI) tags.

278 e (RT) reaction that adds a unique molecular identifier (UMI) to each cDNA molecule to improve the ac

279 e present a straightforward unique molecular identifier (UMI)-linked consensus sequencing workflow (U

280 ript molecule counting with unique molecular identifiers (UMI) that correct PCR bias.

281 Various approaches using unique molecular identifiers (UMI) to analytically remove NGS artifacts h

282 Unique Molecular Identifiers (UMIs) are random oligonucleotide barcodes t

283 Unique molecular identifiers (UMIs) remove duplicates in read counts resu

284 omplex sgRNA libraries with unique molecular identifiers (UMIs) that allowed for screening of clonall

285 We added unique molecular identifiers (UMIs) to all samples, to account for amplif

286 With unique molecular identifiers (UMIs), most of the sequencing errors can be

287 data either with or without Unique Molecular Identifiers (UMIs).

288 datasets have incorporated unique molecular identifiers (UMIs).

289 enBank staff assign unique accession.version identifiers upon data receipt.

290 representing entities using Unified Resource Identifiers (URIs), and sharing information using Resour

291 We characterized physicians using physician identifier variables and characterized geography by Comb

292 iers.org Registry to generate a plurality of identifier variants, which can then be used to match sou

293 A Google-based name identifier was used to assign the gender of authors.

294 Using this technique as an identifier, we demonstrate that CSTMD1 'locks on' to a s

295 Physician identifiers were unavailable, and results may not genera

296 Unique anonymous radiologist identifiers were used to link the discrepancies to radio

297 liographic tasks by implementing citation by identifier, where users cite persistent identifiers (e.g

298 S and MS provides additional unique compound identifiers with detection of features based on retentio

299 ants, which can then be used to match source identifiers with target identifiers.

300 ess to finer geography, such as census tract identifiers, would enable richer analyses-for example, e