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2 sequences but were separated from them by an in-frame "2A-like" sequence element that specifies a cot
3 rame of a gene in the genome and analyze the in-frame (3n) and frameshift (3n + 1 and 3n + 2) mutatio
4 is non-essential, the cells would carry both in-frame (3n) and frameshift (3n + 1 and 3n + 2) mutatio
7 ersions in exons 5 and 8, respectively), one in-frame 5-11 microindel in exon 7 and a 410-bp deletion
8 rsions in PRKCA mRNAs (out-of-frame 61 bp or in-frame 66 bp long), and is preferentially included in
9 ine 95 to histidine (P95H) and a P95-to-R102 in-frame 8-amino-acid deletion caused significant change
10 in reorganization within the gorge, freezing-in-frame a conformation distinct from an unbound state o
12 RNAs identified key protein interfaces where in-frame alleles resulted in loss-of-function due to des
16 leaves a short DNA footprint that can create in-frame and frameshift insertions in coding sequences.
18 ns, whose synthesis is initiated at internal in-frame and out-of-frame start sites, can be functional
19 57BL/6-Klk4 (+/LacZ) mice have LacZ inserted in frame at the Klk4 translation initiation site so that
20 lation initiation codon and rely on a second in-frame ATG codon to produce an enzymatically active is
21 as suggested by the significant bias against in-frame ATGs specifically found at the beginning of the
26 codon is followed by a strong Kozak context in-frame AUG, separated by mitochondrial-targeting seque
27 ized in the nucleus, and mutation of the two in-frame AUGs has no effect on the activation of IRF3 an
28 NS1 protein containing mutations of the two in-frame AUGs results in both the absence of truncated N
31 arrangements in human ALCL are predominantly in-frame, but often aberrant, with clonal TCRalpha but n
33 Most Ewing sarcomas are characterized by the in-frame chromosomal translocation t(11;22) generating t
37 med PtaA for "periplasmic transaminase A" An in-frame-deleted ptaA mutant selectively lacked the alph
40 es, the mutation identified was a novel 3-bp in-frame deletion (c.20_22del) that results in deletion
45 ted sequencing, here we identify a recurrent in-frame deletion (VAV1 Delta778-786) generated by a foc
46 oth the rare truncating mutations and common in-frame deletion alteration of FAM190A may contribute t
47 DNA microarray analysis of biofilms of pdeB (in-frame deletion and EAL) mutant cells revealed that ex
48 ound heterozygous mutations consisting of an in-frame deletion I81_K84 and an A500V mutation, and the
49 = 8.3 x 10(-55), beta = -0.90 s.d.), a rare in-frame deletion in FCGR2B abolishing IgG binding to th
51 quencing revealed a recessive germline 21-bp in-frame deletion in NUAK2 segregating with the disease.
52 analysis demonstrated an association with an in-frame deletion in NUDT15 (chromosome 13, rs746071566)
53 of BAP1 that disrupt the CUBI and notably an in-frame deletion in the CTD that inhibits its interacti
57 d pneumonic plague, we characterized an msbB in-frame deletion mutant incapable of producing an acylt
61 cent studies show that a naturally occurring in-frame deletion mutation (Del-L955) of NaV1.7 channel,
63 e and FBM, our data provide an example of an in-frame deletion mutation exerting a 'polar' effect on
64 ronchiseptica strain RBX9, which contains an in-frame deletion mutation in fhaB, encoding filamentous
69 e role of these genes in pathogenesis, large in-frame deletion mutations of bcaA and bcaB were constr
71 entified four mutations (three missense, one in-frame deletion of 30 base pairs) in six primary tumou
72 assays, and resulted in exon skipping and an in-frame deletion of 40 amino acids in primary human fib
73 Col6a3 mRNA and a mutant transcript with an in-frame deletion of 54 bp of triple-helical coding sequ
74 ely spliced F5 transcript that results in an in-frame deletion of 702 amino acids of the large activa
77 al hypocalciuric hypercalcemia type 2 had an in-frame deletion of a conserved Galpha11 isoleucine (Il
83 hat a splice isoform of erbB2, containing an in-frame deletion of exon 16 (herein referred to as ErbB
86 ble hypomorphic allele (xiamen [xm]) causing in-frame deletion of four amino acids from the interswit
89 and the T9SS, mutants were constructed with in-frame deletion of the CTD and deletion of porU, a C-t
93 CRISPR/Cas9 to create nematodes carrying an in-frame deletion of the same 571-residue portion of the
100 plice donor site in exon 11, and leads to an in-frame deletion within the prelamin A mRNA and the pro
101 e splice site, six missense variants and one in-frame deletion) and one family with a missense varian
102 N (substitution), lasR (deletion), and rpoD (in-frame deletion), all encoding regulators of large gen
103 Each of these homozygous variants (a large in-frame deletion, a frameshift deletion, and a missense
108 e was replaced by genomes harboring internal in-frame deletions affecting the L- or capsid-coding reg
109 600E harbored somatic mutations in MAP2K1 (6 in-frame deletions and 1 missense mutation) that induced
112 ) of DIPGs, including missense mutations and in-frame deletions and insertions not previously describ
114 however, biallelic mutations involving small in-frame deletions did not induce the anephrogenic pheno
117 o test strains with transposon insertions or in-frame deletions in biofilm-associated loci: ahrC, arg
121 ilis epsH-K genes into Escherichia coli with in-frame deletions in the PNAG biosynthetic genes pgaA-D
124 reduced by 50% have been proven for specific in-frame deletions of 1 or several amino acids, probably
125 A transcripts in 40% of cancers also contain in-frame deletions of evolutionarily conserved exons.
128 r, many tumors exhibit missense mutations or in-frame deletions or insertions, often outside the func
133 uded seven unique missense variants and nine in-frame deletions/duplications of which 12 were novel.
134 ing transcripts, and approximately 20-30% of in-frame Delta9,10 transcripts predicted to encode a BRC
135 Although most children showed a decrease in frame dependency over the 4 years of the study, almos
138 the microscope over the imaged area, warping in frames due to changes in contact angle and varying re
140 riants, including nonsense variants, induced in-frame E12 skipping through the modification of splice
141 probing of the putative linker segment using in-frame enhanced green fluorescent protein (EGFP) inser
142 man CVID-affected family with a heterozygous in-frame exon 9 skipping mutation (c.835+2T>G) and in a
143 tory domain, induces partial skipping of the in-frame exon and nuclear accumulation of beta-catenin.
144 (Rb) tumor suppressor protein (RbN) harbors in-frame exon deletions in partially penetrant hereditar
145 nous domain of collagen VII is encoded by 82 in-frame exons, which makes splice-modulation therapies
147 Our analyses identified 331, 303 and 667 in-frame FGs with retaining kinase, DNA-binding, and epi
150 /Mental Retardation, X-linked) that generate in-frame fusion (IFF) proteins devoid of key chromatin i
152 ed IL-1Ra (PAS-IL-1Ra) has been generated by in-frame fusion of a long, defined-length, N-terminal Pr
153 lamellar carcinoma (FLC) is characterized by in-frame fusion of DnaJ heat shock protein family (Hsp40
154 tion with ASOs or siRNA was achieved via the in-frame fusion of either Saccharomyces cerevisiae GAL4
163 tumors from 49 patients by RNA-Seq and found in-frame fusions or C-terminal truncations of MAP3K8 in
166 ccur at two intragenic positions, leading to in-frame gene-gene fusions that generate chimeric mRNAs.
167 genome sequencing strategy and identified an in-frame germline compound heterozygous deletion, p.[Gln
169 agglutinin (IE3-HA) virus by insertion of an in-frame HA epitope sequence allowed detection of the IE
170 In particular, two individuals shared an in-frame heterozygous deletion of three nucleotides (c.4
177 S520F, p.R1158H, p.E1163K, p.D1165H, and the in-frame indel p.VYEEDM1161V) identified in Sezary Syndr
178 ring variants defined as missense plus LoFs, in frame indels and stop-loss variants (n = 13 014, OR =
179 used to generate large libraries with random in-frame InDels across the entire single-chain variable
180 ious single-nucleotide polymorphisms (SNPs), in-frame indels, and deletions; 2) single/multigene dele
181 rate libraries of random variants with short in-frame InDels, and screen TRIAD libraries to evolve a
183 ypes (in-frame [missense point mutations and in-frame indels] versus truncating [nonsense mutations a
184 show that a naturally occurring, downstream, in-frame initiation codon is used to make a dCREB2 prote
185 on, GR(369-), which eliminates all potential in-frame initiation codons upstream of the DNA binding d
186 , instead, force translation from downstream in-frame initiation codons, yielding amino-terminally tr
190 site variant (c.636+1G>A) that results in an in-frame insertion of 45 nucleotides and a missense vari
191 of 13 or more lysines followed by either an in-frame insertion of a repeat of the four amino acids p
194 lies, we identified heterozygous missense or in-frame insertion/deletion mutations in C1R (15 familie
196 menable to structure-function analyses using in-frame insertions and deletions as presented herein.
200 or specific driver events, including hotspot in-frame insertions that target KBTBD4 and 'enhancer hij
201 t SPINE-generated libraries are enriched for in-frame insertions, have drastically reduced sequence b
202 re likely to have a regulatory role, several in-frame internal ORFs within existing ORFs, resulting i
203 mutated bMSTN gene (bMSTN-mut) was inserted in frame into the pEF1a-IRES-DsRed-Express2 vector and t
204 table fusion candidates, we focused on three in-frame kinase fusion transcripts that retain a kinase
205 nt anti-ERbeta antibodies, we showed that an in-frame ligand binding domain and C terminus were prese
207 MCI 'non-progressors' is a weakness inherent in framing MCI primarily within a deterministic neurodeg
209 essive versus dominant) and molecular types (in-frame [missense point mutations and in-frame indels]
210 n an experimental parameter regime for which in-frame motion prevents SPT and tight confinement of fa
213 s from the mutated transcript can produce an in-frame mRNA and a truncated, but still functional, pro
215 that the presence of at least 1 missense or in-frame mutation is associated with adult onset and slo
216 spot" regions would introduce biases towards in-frame mutations and would compromise the reproducibil
221 may be obscured by proportional presence of in-frame mutations that still produce functional protein
222 the US1 gene that encodes ICP22, produces an in-frame, N-terminally truncated form of ICP22, known as
223 suggest that this classification is helpful in framing new diagnostic and therapeutic approaches to
224 in which a protein encoded by a gene with an in-frame nonsense codon at an essential lysine can be ex
225 ible gene-targeting system by introducing an in-frame nonsense mutation into the coding sequence of C
226 oding a putative TBC1D20-ZFN protein with an in-frame p.[H140_Y143del] deletion within the highly con
227 ulting in difficulty in placing the patients in frame, patient's inability or unwillingness to tolera
234 As (ACE-tRNA) which can effectively suppress in-frame PTCs and faithfully encode their cognate amino
235 inants occurring at gene junctions presented in-frame sequence duplications, whereas most intragenic
238 these gene structure rearrangements resulted in frame-shift mutations and premature termination codon
239 s in replicating eukaryotic cells, resulting in frame-shifting insertion/deletion (indel) mutations a
240 rom mice and humans, representing over 4,600 in-frame single-cell-derived TCRalphabeta sequence pairs
241 exon 12 (E12) as a model system because its in-frame skipping leads to a potentially functional prot
246 Rabies virus (RABV) P gene mRNA encodes five in-frame start codons, resulting in expression of full-l
248 tivated by promoter defects, introduction of in-frame stop codon, or the lack of a polyadenylation si
249 am of the LRR-encoding exons and contains an in-frame stop codon, the alternative transcript is predi
252 through across two evolutionarily conserved, in-frame stop codons of MTCH2 using luminescence- and fl
253 with genomic (main) ORF1 by converting three in-frame stop codons to nonstop codons, a uORF-ORF1 fusi
254 rosophila lebanonensis, but it does not have in-frame stop codons, suggesting the exon's functional d
256 automated genome engineering, we introduced in-frame TAG codons into 22 essential genes, linking the
261 at expresses human calreticulin (hCRT) fused in frame to MmuPV1 E6 (mE6) and mE7 early proteins and r
262 d driven by the hly promoter (h30) or linked in frame to the ActA N-terminal 100 amino acids and driv
263 l region of the glutamate-rich protein fused in frame to the C-terminal region of merozoite surface p
264 ncoded green fluorescent protein (GFP) fused in frame to the internal capsid scaffold and maturation
265 m30 vaccine candidates expressing r30 linked in frame to the L. monocytogenes listeriolysin O signal
268 bidopsis thaliana) AtSCS gene results in two in-frame transcripts and subsequently two proteins, that
269 ons fuse genes that are predicted to produce in-frame transcripts of SIRPG-WWOX, SMOC2-PROX1, and PIE
271 frame in the Wnt16a mRNA to an alternative, in-frame translation initiation site, resulting in the p
273 of the functional complex required internal in-frame translation of small subunits from within the l
274 set of BAC-expressing neurons results in the in-frame translation of the reporter protein hence the s
277 xon skipping by testing whether an internal, in-frame truncation of a transmembrane protein gamma-sar
280 roteinogenic amino acid encoded by a recoded in-frame UGA codon that does not operate as the canonica
281 ins occurs by translational recoding whereby in-frame UGA codons are redefined to encode the selenium
284 date genes, but this approach often produces in-frame variants that retain functionality, which can o
287 as nonproductive VJ, sterile transcripts, or in-frame VJ whose products may not associate with the H
288 mplementary DNA from renal tissue and cloned in frame with a CPD (YARKARRQARR) at the amino-terminal
289 he mixed lineage leukemia (MLL) gene fuse it in frame with multiple partner genes creating novel fusi
290 ng the extra-cellular domain of a CAR-target in frame with one of the marine luciferases or their eng
291 molog of the molecular chaperone DNAJ, fused in frame with PRKACA, the catalytic domain of protein ki
293 repeat and exogenous insert were positioned in frame with the native protein-encoding sequences but
294 ould produce transcripts bringing these ORFs in frame with the upstream polyprotein, thus leading to
295 heterologous proteins (ABL1, Rev, PKIA, APC) in-frame with AF10 are sufficient to immortalize murine
297 A FusionRed (FRed) cassette was inserted in-frame with the C terminus of CSF1R, separated by a T2
298 in vivo, we introduced a luciferase reporter in-frame with the C-terminus of the dystrophin gene in m
299 ion of T-DNA into the targeted exon sequence in-frame with the hptII gene would allow hptII expressio
300 d upon either fusion of the reporter protein in frame within nonstructural protein 3 (nsP3) or insert