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1 ales and females: CD1 (outbred) and C57BL/6 (inbred).
2 pression of the drl2-Mo17 allele in the Mo17 inbred.
4 report that non-GT cells of self-pollinated inbred A. annua plants can express the artemisinin biosy
7 cted parental haplotypes, which revealed the inbred ancestry of infections and non-Mendelian inherita
8 are expressed in at least one tissue of one inbred and an additional ~10 000 "silent" genes that are
10 ders of the known pedigree may themselves be inbred and compute the appropriate inbreeding-adjusted k
12 ity, and its domestication has produced many inbred and outbred lines that are used for different pur
15 uma.SIGNIFICANCE STATEMENT Our evidence that inbred and outbred rats learn to control the duration of
17 n hybrids through the crossing of 593 unique inbreds and 496 unique testers across multiple environme
18 anscriptome data of diverse Zea mays (maize) inbreds and hybrids, including 401 samples from five dif
19 , and 24-nt sRNAs varies very little between inbreds and hybrids, suggesting that hybridization affec
20 ed with their frequency of dispersion across inbreds and on average have significantly fewer co-expre
21 e of a list of potential breeding crosses of inbreds and testers based on their historical yield data
22 Here, two genomes for Mo17 (a modern maize inbred) and mexicana are assembled using a meta-assembly
25 opulation sequence data from 488 recombinant inbred Arabidopsis thaliana genomes, we identified 6502
26 matography analyses demonstrate that the two inbreds are highly differentiated in their metabolite pr
27 d trait is robust as it improves yield in an inbred as well as in a panel of hybrids, at several loca
28 hibited substantially more variation between inbreds as compared with observed variation for gene exp
31 ntal gradient from four maize genotypes (the inbreds B73 and Mo17, and the reciprocal hybrids B73 x M
32 (oligos) specific to chromosome 10 of maize inbreds B73 and Mo17, respectively, are synthesized and
34 tissues or developmental stages of two maize inbreds, B73 and Mo17, as well as their F(1) hybrid.
35 Mutator (Mu) insertional library in the B73 inbred background designated BonnMu A total of 1,152 Mu-
41 eding strategy between outbred CD-1 mice and inbred C57-based Cre lines that can be used to study cel
43 d qMotor in SOD1(G93A) transgenic mice in an inbred C57BL/6J background, hereafter called iSOD1(G93A)
44 s (CC) mouse strains, as well as the classic inbred C57BL/6J, C3H/HeJ, and BALB/cJ strains, for scree
46 We challenged birds sampled from a highly inbred chicken line (line 6(3)) that is relatively resis
48 tion using next generation sequencing on the inbred chicken lines with the assistance of CNVnator.
53 transgenic hybrid breeding strategy crossing inbred Drd1-Cre and Drd2-Cre transgenic mice with outbre
54 n changed in a population of fully sequenced inbred Drosophila melanogaster strains when flies develo
55 ple stages of metazoan development, using 80 inbred Drosophila wild isolates, identifying thousands o
56 and populations include inbred, recombinant inbred, F1 hybrid, transgenic, targeted mutants, chromos
57 QTL) analysis of an intra-Andean recombinant inbred family derived from a landrace and a wild accessi
60 with single-cell mRNA sequencing of the same inbred fly strain to map transposon expression in the Dr
61 We evaluated evidence in the B73 Zea mays inbred for differences in the activity of the UPR betwee
65 architectures (RSAs) of two maize (Zea mays) inbred genotypes and their hybrid as they grew in comple
68 been constructed in crop species, and their inbred germplasm and associated phenotypic and genotypic
70 itutions between restoring and non-restoring inbreds, however only one substitution, F187Y, was withi
71 ygosity found in the genomes of particularly inbred individuals and of domestic animals can skew esti
73 s of realized inbreeding, we discovered that inbred individuals had lower survival probabilities and
77 studies have been largely carried out using inbred isogenic mouse strains, in which there is no (or
79 t individual female Drosophila from a highly inbred laboratory strain exhibit idiosyncratic odor pref
81 relatively resistant to MD and from another inbred line (line 7(2)) that is highly susceptible to MD
82 ing-(GBS) derived markers to map recombinant inbred line (RIL) and doubled haploid (DH) populations f
83 s) for the interspecific Petunia recombinant inbred line (RIL) population - P. axillaris x P. exserta
84 used to measure WUE(plant) in a recombinant inbred line (RIL) population created between the C(4) gr
85 ou9308's high yield potential, a recombinant inbred line (RIL) population derived from cross of Xieqi
86 cessions, Col-0 and Bur-0, and a recombinant inbred line (RIL) population derived from these parents
87 ng - were employed to genotype a recombinant inbred line (RIL) population developed from a bi-parenta
88 and analyzed in two F(6)-derived recombinant inbred line (RIL) populations derived from the crosses b
92 semblies for the complex genome of the maize inbred line NC358 using PacBio datasets ranging from 20
93 ing effect of other viruses, we generated an inbred line of flies with galbut virus as the only detec
94 hybrids to a control population selected on inbred line performance when the number of quantitative
95 f samples in a subtropical maize recombinant inbred line population (CML444 x SC Malawi) subjected in
96 ulation in rice grain by using a recombinant inbred line population and a backcross introgression lin
102 g parents and descendants of two recombinant inbred line populations derived from two weed x crop cro
103 easurement of gene expression in recombinant inbred line populations has enabled investigation of the
104 -RIL (nested association mapping-recombinant inbred line) populations indicated that the drl loci res
105 y 313.4-Mb genome sequence of a bottle gourd inbred line, USVL1VR-Ls, with a scaffold N50 of 8.7 Mb a
106 f 15.78 megabases) of the maize small-kernel inbred line, which is derived from a tropical landrace.
109 ropagated tetraploid into a seed-propagated, inbred-line-based hybrid, but this process requires a be
111 idopsis population of epigenetic recombinant inbred lines (epiRILs) for resistance against Hyaloperon
112 ight-week old male mice from two recombinant inbred lines (LGXSM-6 and LGXSM-33) were subjected to ax
113 d four introgressed PM resistant recombinant inbred lines (RIL, USVL531-PMR x USVL677-PMS) were perfo
115 netic map of a population of 210 recombinant inbred lines (RILs) derived from a cross between ZS97 an
116 ia as well as in a collection of recombinant inbred lines (RILs) derived from indica Jasmine-type var
117 dence, investigating a subset of recombinant inbred lines (RILs) developed by the Australian peanut b
118 notypically contrasting bulks of recombinant inbred lines (RILs) to identify Pm5e-linked markers.
123 NILs derived from crosses between 18 diverse inbred lines and the recurrent inbred parent B73, referr
124 y comparing the microbiomes of diverse maize inbred lines and their F(1) hybrid offspring, which we q
127 criptomic divergence of the maize (Zea mays) inbred lines B73 and Mo17 and their reciprocal F1 hybrid
128 me shotgun (WGS) sequences for the two maize inbred lines B73 and Mo17 using k-mer analysis to quanti
131 are not specific to the Col-Cvi recombinant inbred lines but have an epigenetic state that is inhere
133 r castaneus map, and a map constructed using inbred lines derived predominantly from M. m. domesticus
134 rared imaging in a population of recombinant inbred lines developed from a cross between KS4895 and J
136 study was carried out to (i) assess a set of inbred lines for combining ability under stressed and op
139 very close to the centromere in recombinant inbred lines from an intermated B73 x Mo17 population, s
141 es, we genotyped an association panel of 508 inbred lines genotyped with a total of ~550,000 SNPs (Il
142 d 219 soybean accessions and 152 recombinant inbred lines genotyped with high-density markers and phe
143 support the sequenced genomes of many maize inbred lines in addition to the B73 reference genome ass
145 c data for more than 1,000 different natural inbred lines led to the development of several data repo
146 llocation among floral whorls in recombinant inbred lines of Brassica rapa in multiple environments t
148 plant height data involving 3502 recombinant inbred lines of maize planted in multiple discrete envir
149 a recovery time, in the unrelated, sequenced inbred lines of the Drosophila melanogaster Genetic Refe
150 in 3 thermal environments for the sequenced, inbred lines of the Drosophila melanogaster Genetic Refe
151 through chronological sampling of 350 elite inbred lines representing multiple eras of germplasm fro
153 d the number of active genes in the parental inbred lines significantly independent of treatment.
154 e segment substitution lines and backcrossed inbred lines suggested that NOMT is the underlying cause
155 number of recombinant events in recombinant inbred lines suggests that for a biparental population w
156 creened a panel of sorghum (Sorghum bicolor) inbred lines to identify and characterize sorghum tolera
157 he dek phenotypes were introgressed into two inbred lines to take advantage of maize haplotype variat
158 sed transgressive segregation in recombinant inbred lines to test if this apparent species-wide (nonh
159 e inferred in silico based on their parental inbred lines using single nucleotide polymorphisms (SNPs
160 expected heterozygosity (He) in these highly inbred lines were 0.291 and 0.359, respectively, which i
161 genome resequencing data from 61 additional inbred lines were enriched in organ-specific and stress-
162 closely examined beta-costic acid-deficient inbred lines were found to harbor Zmtps21 pseudogenes la
164 ng of 200 Drosophila Genetic Reference Panel inbred lines with complete genome sequences and for whic
165 ant of hybrid rice (derived from recombinant inbred lines) by comprehensively evaluating all possible
166 on tests on the maize-282-diverse-panel (282 inbred lines) under normal (25 degrees C) and chilling (
167 the sets of transcribed genes in additional inbred lines, arising from inbred-specific DNA methylati
168 using an independent population of backcross inbred lines, derived from the same parents, which allow
169 he same pattern was observed in historically inbred lines, indicating a high frequency of recessive l
170 ulation with a limited number of recombinant inbred lines, it is unnecessary to genotype the lines wi
173 ed mass features were present in >90% of the inbred lines, the majority were found in <50% of the sam
179 support a global selective sweep of a highly inbred livestock pathogen that originated within Europea
182 nes, dRemp is highly mobile in the Corn Belt inbred M14, identified earlier by breeders as being high
183 on, comparative optical mapping of two other inbred maize lines revealed a prevalence of deletions in
185 that microbial co-occurrence patterns of the inbred maize lines' rhizosphere were significantly more
186 PR-Cas9 editing of a waxy allele in 12 elite inbred maize lines, a process that was more than a year
187 n evolutionary transect (two teosinte, three inbred maize lines, and five modern maize hybrids) grown
189 use computational analysis of 13 recombinant inbred mapping populations to assess crossover and gene
190 inbreeding coefficient were used to prohibit inbred marriages and prohibit breeding of some pairs of
191 show that B cells and serum antibodies from inbred mice demonstrate a reproducible ID hierarchy to t
194 alizability of any genetic research study in inbred mice is dependent upon all individual mice being
196 ss-enhanced fear learning (SEFL) paradigm in inbred mice that produces PTSD-like characteristics in a
200 design IMPLICON for ICRs in adult tissues of inbred mice, validating it in hybrid mice from reciproca
201 occurring genetic variation in wild-derived inbred mice, which enables the identification of DNA seq
207 rized mouse AD models into three groups: (i) inbred models, (ii) genetically engineered mice in which
209 dress this issue; discuss the limitations of inbred mouse models of monocyte-macrophage homeostasis;
212 mouse strain, and the mtDNA from a different inbred mouse strain to examine the genome-wide nuclear D
213 mice, that contain the nuclear DNA from one inbred mouse strain, and the mtDNA from a different inbr
216 dogenes in the mouse reference genome and 18 inbred mouse strains (available via the mouse.pseudogene
217 ZIKV exposure in four genetically divergent inbred mouse strains (C57BL/6J, 129S1/SvImJ, FVB/NJ, and
220 hese assays are ubiquitously performed using inbred mouse strains and mutations placed on inbred gene
221 ng inflammation and toxicity across multiple inbred mouse strains and to use genome-wide association
222 st several days of infection.IMPORTANCE Most inbred mouse strains are relatively resistant to orthopo
224 , a powerful genetic resource of recombinant inbred mouse strains derived from eight diverse founder
226 rformed quantitative trait locus analysis in inbred mouse strains that carry the same hypomorphic all
227 aborative Cross (CC), a panel of recombinant inbred mouse strains that exhibit a range of disease man
228 transcription factors between crosses of two inbred mouse strains to elucidate the regulatory mechani
229 ing cis-regulatory variation in wild-derived inbred mouse strains to explore the mechanisms underlyin
230 tinal ganglion cell (RGC) function in common inbred mouse strains using the pattern electroretinogram
231 RORgamma(+) Treg proportions varied between inbred mouse strains, a trait transmitted by the mother
232 nitor differentiation from the marrow of two inbred mouse strains, C3H/HeJ (C3H) and C57BL6J (B6).
233 e genomic DNA methylation by intercrossing 2 inbred mouse strains, C57BL/6N and C3H/HeN, and analyzin
234 ough urinary Mup protein levels vary between inbred mouse strains, this difference is most pronounced
237 iet (HCD), we quantified food-intake in four inbred mouse strains: C57Bl/6J (B6), NOD/LtJ (NOD), 129S
239 maize hybrids generated by crossing founder inbreds of nested association mapping populations for fl
241 individuals from three genetic backgrounds (inbred - outbred) into a novel environment at three foun
243 en 18 diverse inbred lines and the recurrent inbred parent B73, referred to as the nested NILs (nNILs
245 ys) samples spanning five tissues from eight inbred parents and 12 hybrid genotypes, covering a spect
246 rved between the genetic distance of the two inbred parents and the number of SPE genes identified.
247 core genes conserved across the 62 profiled inbreds, PAVs have lower expression abundances which are
248 dulating (nod-) and nodulating (nod+) sister inbred peanut lines, E4/E5 and E7/E6, and their nod+ par
250 ceptible) were used to develop a recombinant inbred population with future goals of identifying genom
254 ear equivalent to those found in outbred and inbred rat strains, except for lower incidence and short
257 Here, we determined whether BXD recombinant inbred (RI) mice strains are more suitable than C57BL/6J
259 ting IBD-based methods are limited to highly inbred samples, or lack robustness to genotype error and
264 mouse was initially generated in the C57BL/6 inbred strain and has been backcrossed into the BALB/cBy
265 However, ground state pluripotency in some inbred strain backgrounds is unstable in the absence of
267 identical to that of any other CC strain or inbred strain for which prior data are available, indica
268 sting using multiple genotypes revealed that inbred strain siblings do not cooccupy at higher rates t
269 The castaneous (CAST) mouse, a wild-derived inbred strain, is highly susceptible to orthopoxvirus in
270 mice from an advanced intercross between two inbred strains (LG/J and SM/J); this GWAS identified 23
271 cly available genome sequences of 36 popular inbred strains and provide lists for each strain of prot
274 enetic studies involving a cross between two inbred strains are usually followed by congenic mapping
275 he hybrid mouse diversity panel (HMDP) of 83 inbred strains as a surrogate for human natural immune v
276 ted the hypothesis that genetic variation in inbred strains of mice influences the innate variability
277 r this study, we collected microbiota from 2 inbred strains of mice which differ in adiposity and glu
278 ity and mosaic regularity across recombinant inbred strains of mice, finding that, although both trai
279 Diversity Panel data, which consisted of 100 inbred strains of mice, we identified 97 DMCs that were
284 ences from individuals of four commonly used inbred strains that were procured from either the colony
285 fter assigning female mice from 29 different inbred strains to normal chow or lithium diet (40 mmol/k
287 th the use of a panel of MHC-III recombinant inbred strains, we found that the 33-kb Ltab-Ncr3 haplot
289 s of innate immune genes to NDV infection in inbred sublines of the Fayoumi and Leghorn breeds known
290 ry rats and possibly to those that have been inbred to model absence epilepsy.SIGNIFICANCE STATEMENT
293 boratory outbred BN, outbred Long-Evans, and inbred WAG/Rij rats (i.e., a model of absence epilepsy).
294 s, Sprague Dawley and Long-Evans, and/or the inbred WAG/Rij strain (a rat model of heritable human ab
296 10 296 310 SNPs available from the parental inbreds, we explored the patterns of genomic relationshi
298 ilar to the distribution in the B73 parental inbred, whereas that of Mo17 x B73 resembles the Mo17 pa
300 se transcript pairs (NAT pairs) in two maize inbreds with different sensitivity to drought, as well a