ライフサイエンスコーパス: infer

1 both causality and magnitude of risk can be inferred.

2 vel, from which population-level effects are inferred.

3 nistic insights into protein function may be inferred.

4 ctive groundwater migration from onshore are inferred.

5 est are biased in admixed samples, with KING inferring 30.8% fewer fifth degree Mexican American rela

6 Analysis of the inferred 3D-structures indicates no difference in affini

7 (DDD), an operator approximation approach to infer a continuous distribution map between time points.

8 of 12 months, 6 months, and ~10 days, and we infer a decadal warming trend that substantially exceeds

9 To investigate this, we infer a fitness model for the poliovirus viral protein 1

10 E relies on the multivariate Hurdle model to infer a sparse set of conditional dependencies which ref

11 We infer a spatiotemporal signaling network of endoderm-mes

12 We inferred a fossil-calibrated phylogeny of Dictyostelia,

13 We inferred a phylogeny of the two species using DNA sequen

14 DeMaSk first infers a directional amino acid substitution matrix from

15 network inference algorithm which is able to infer accurate Boolean network topology and dynamics fro

16 tein-coding and ribosomal RNA genes could be inferred across the phylogeny, direct inference of phylo

17 among 78 evaluable patients were required to infer activity and three or more among 16 were required

18 models called Potts models have been used to infer all-by-all pairwise correlations between sites in

19 We infer an Africa-wide phylogeny that features widespread

20 esistant maize genotypes to phylogenetically infer ancestral symptom intensities and check for phylog

21 task: given an antibody of interest and its inferred ancestral lineage, which branches in the tree a

22 It may arise from selective pressures to infer and avoid social threats, particularly in ambiguou

23 ut we also draw on loosely related events to infer and imagine the outcome of entirely novel choices.

24 ictions for each viral component, as well as infer and predict their contributions to ILI, which may

25 (2020) present an algorithm for inferring and inverting such trial-to-trial differences,

26 ateral prefrontal cortex plays a key role in inferring and making explicit decisions about the causal

27 be involved in the antigenic variation were inferred, and some of the positions were located near th

28 In rare instances, paleontologists can infer asymmetry in predatory or foraging behavior, inclu

29 tially limiting the validity of using GPS to infer at-sea behaviour when answering behavioural or eco

30 int measurements, we introduce a method that infers basin-scale deep-ocean temperature changes from t

31 from macrofinance using asset market data to infer belief restrictions for macroeconomic growth rates

32 e molecular machine illustrate the limits of inferring biochemical mechanism from protein structure.

33 A plethora of introns have been inferred by computational analyses as potential mirtrons

34 es of the world are often hidden and must be inferred by constructing internal models based on indire

35 genomic network with other existing networks inferred by different DNA binding information-based meth

36 also revealed guanylyl cyclase activity, as inferred by sequence analysis.

37 teins followed by Mendelian randomization to infer causal relations of proteins for PLT/MPV.

38 d by the spatial correspondence cues and the inferred causal structure the frontal eye field and the

39 By contrast, informed by observers' inferred causal structure, the FEF-IPS circuitry integra

40 Main study limitations were the inability to infer causality due to the cross-sectional nature of the

41 lutional neural network (CNN) could learn to infer cell type-specific chromatin accessibility solely

42 rence-free algorithms have been developed to infer cell-type proportions from DNA methylation, a comp

43 Inferring cell-signaling networks from high-throughput d

44 omic variability to subclonal evolution, and infer cellular dynamics of differentiating hematopoietic

45 Emerging methods to infer cellular functions are beginning to shed new light

46 0) Pb and (137) Cs analyses and were used to infer changes in peatland hydrology and carbon dynamics.

47 co-localization of TF binding sites based on inferred cis-regulatory modules (CRMs).

48 racy of the reconstructed mutation order and inferred clone groupings varied extensively among method

49 technologies produce data that is ideal for inferring CNAs.

50 We illustrate these measures by inferring co-localization properties of 10 273 molecules

51 y classified into patterns of movements with inferred common goals-actions.

52 re, we present a framework to quantitatively infer community assembly mechanisms by phylogenetic bin-

53 itats by examining community composition and inferring community assembly processes across four major

54 of circularly polarized light can be used to infer conformation handedness.

55 We then used these inferred coordinates to annotate transcriptional units i

56 individual amounts of sensory information to infer correct decisions or provide explicit probability

57 nucleotide variants alone cannot be used to infer cross-transmission in M. abscessus but does provid

58 the potential of Cu isotopes in bivalves to infer Cu bioavailability changes related to anthropogeni

59 ionally, we use ecological niche modeling to infer current and past (Last Glacial Maximum) environmen

60 The inferred deleterious role of APP and DR6 is confirmed in

61 ors the highest mitogenome diversity and its inferred demography indicates a constantly large effecti

62 n bioapatite constitute a promising proxy to infer dietary information from extant and extinct verteb

63 ior distribution over unknown parameters, we infer differences in the progression of the epidemic in

64 correlated with asymmetry in HSI; and third, inferred differences in the extent of conflict predict t

65 another dataset of gastric cancer with FSSEM inferred differential GRNs in cancer versus normal tissu

66 er unit tissue area with aging, but rates of inferred differentiation into Type I cells, and indeed o

67 validate our widely-applicable approach for inferring directed genotype networks from data, but also

68 constructed, including 293 linked pairs with inferred direction of transmission.

69 Inferring discrete population structure is particularly

70 fossil occurrences with Bayesian methods to infer dispersal and diversification rates and taxonomic

71 ed, magnifying the need to show, rather than infer, effects on population size.

72 s), using antagonists of opioid receptors to infer endogenous peptide activity, and genetic knockout

73 Here, we propose a fully Bayesian method to infer ensembles of chromatin structures and to determine

74 ethods that analyze genomic heterogeneity to infer evolutionary dynamics.

75 atasets, uncover this signal, and accurately infer evolutionary history.

76 om both mitochondrial and nuclear genomes to infer evolutionary relationships and potential patterns

77 cribes this complex process and allows us to infer expression state of genes from replicate transcrip

78 The power of our method to correctly infer expression states is generally high and remarkably

79 rd-shelled eggs, this eggshell type has been inferred for non-avian dinosaurs.

80 en genetically modified and, if modified, to infer from its genetic sequence its likely lab of origin

81 put from replicated ADMIXTURE runs, but also infer from these data the optimal number of population c

82 nitoring of phenotypes that are difficult to infer from transcriptomics.

83 es in long-term water-use efficiency (+2.5%) inferred from (13) C composition.

84 o simulations based on exchange interactions inferred from [Formula: see text]-oriented high-field sp

85 tal determination of metabolic fluxes can be inferred from a characteristic rearrangement of stable i

86 Stories are often inferred from a protein's shape (i.e., its structure).

87 of TF (transcription factor)-binding motifs, inferred from alternative alleles at the haQTLs, implied

88 and rotational diffusion of lipids could be inferred from changes in the envelope of the C-H stretch

89 rom trial to trial, and relative values were inferred from choices.

90 rity, ploidy, and subclonality were reliably inferred from different genomic platforms, and these cha

91 of the various cell-types in a tumor, can be inferred from DNA methylation of surgical specimens.

92 eation density and large growth rates can be inferred from DSC and microscopy experiments which could

93 survival of extremes, via respite or refuge, inferred from field observations will help test such int

94 We used co-expression modules inferred from gene expression data with five methods as

95 be measured directly and instead can only be inferred from genetic samples, which are unavoidably sub

96 Natural evolution inferred from genomic comparisons, however, almost alway

97 Haplogroups were inferred from genotyping data using HaploGrep.

98 molecular assembly pathways for viruses are inferred from high resolution structures of purified sta

99 ll unclear whether synaptic plasticity rules inferred from in vitro experiments are correct in physio

100 Genomes computationally inferred from large metagenomic data sets are often inco

101 Using mobility data inferred from mobile-phone calling records in Namibia, w

102 al filament size with conformational changes inferred from molecular dynamics simulations, providing

103 first time in the study of climate dynamics inferred from multivariate climate time series.

104 t of missing cases on a transmission network inferred from Mycobacterium tuberculosis sequencing data

105 ly determined structural epitopes previously inferred from NAb:Env structures.

106 mations throughout the wall and thrombus are inferred from optical coherence tomography.

107 eatures of chromosome axis/loop architecture inferred from our data can help to explain enigmatic, ye

108 rsal along the southern Mozambican coastline inferred from photo-identification and telemetry studies

109 s matched with the levels of gene expression inferred from RNA-seq data; (v) validation studies using

110 l bone-marrow organization can be accurately inferred from single-cell transcriptome data using the R

111 in response to fluctuations in precipitation inferred from speleothem oxygen and strontium stable iso

112 t remained present in activity-silent traces inferred from spiking synchrony in the PFC.

113 l structure during CO(2) RR for FeAg NPs was inferred from the analysis of the operando NRIXS data (p

114 ipRGC function was inferred from the PIPR (pupil size following stimulus of

115 Changes in the geological sulfur cycle are inferred from the sulfur isotopic composition of marine

116 tional informativeness for disease cannot be inferred from their accuracy in predicting regulatory an

117 ported phenomenology and simple enough to be inferred from upcoming experiments.

118 in recognition of succinoglycan, as might be inferred from work on the Lotus japonicus MtLYK10 orthol

119 One infers from our results that the hydrolysis of NO(2) in

120 Fecal microbiota composition and inferred function, fecal SCFA concentration, gastrointes

121 snRNA-seq identified transcript profiles and inferred functions, cell trajectories, signaling interac

122 d corto, a fast and lightweight R package to infer gene networks and perform MRA from gene expression

123 atistics and/or richer features derived from inferred gene trees and ancestral recombination graphs (

124 The major obstacle in inferring gene regulatory networks is the lack of data.

125 more, we show that the adversary can use the inferred genomic data obtained from the attribute infere

126 human precursors, instead of computationally inferred germline sequences, to HIV broadly neutralizing

127 B cell receptors (BCRs) generally depend on "inferred germline" sequences, and thus their relationshi

128 and structural studies to compare mature and inferred-germline Ab binding to envelope protein domain

129 pping our model of Trichodesmium growth onto inferred global surface ocean fields of pCO(2) , tempera

130 lects glutamine transport and can be used to infer glutamine metabolism.

131 The inferred GRN captures many known regulatory interactions

132 o pipeline (hisat 2 + cufflinks package) and infer GRNs from these processed data.

133 m named fused sparse SEM (FSSEM), to jointly infer GRNs under two conditions, and then to identify di

134 in phosphorylation sites that can be used to infer >1,500 kinase-kinase interactions and devised algo

135 IBIS is also accurate, inferring >=7 cM IBD segments at quality comparable to R

136 me undetectable by search algorithms used to infer homology.

137 ls from individual neurons in the brain, and infer how they are inter-connected.

138 surface evolve neutrally and can be used to infer human population structure.

139 Genotypes of these hybrids were inferred in silico based on their parental inbred lines

140 iculum representation predicted success when inferring indirect relationships among events.

141 ide a general modelling framework to jointly infer infection histories and describe immune responses

142 is highly focal: 85% of mean distances from inferred infectors to their secondary VL cases were <300

143 icular, ligand-receptor pairs can be used to infer intercellular communication from the coordinated e

144 imentally measured packing configuration and inferred interparticle forces at different sample stress

145 e orbital inclination of this pulsar that we infer is caused by a combination of a Newtonian quadrupo

146 study design does not allow causality to be inferred, it does support the theory that persistent CMV

147 structure provide a vector space that codes inferred item relationships with a direction vector that

148 stem while recording pupillometry and EEG to infer its functional capacity.

149 recognize the intent and onset of motion by inferring its early warning signals.

150 However, current cancer phylogeny methods infer large solution spaces of plausible evolutionary hi

151 ngle-cell RNA-sequencing make it possible to infer latent developmental processes from the transcript

152 vironmental measurements could contribute to inferring latent categories (e.g., geographic location),

153 ed using time-dependent cross correlation to infer leader-follower interactions between each pair of

154 em in a single report, which can be used for inferring likely causal genes.

155 differentiating states with computationally inferred lineage relationships.

156 grees by: (1) using an existing algorithm to infer local ancestries for all individuals in a family,

157 elihood inference of admixture networks with inferred local genealogies based on the well-known multi

158 We infer low LP in all three regions, i.e., in northern Ger

159 We infer major genomic patterns associated with the variety

160 ents enable protein abundance estimation and infer mechanisms of translation.

161 then validated the model by showing that the inferred mechanisms of anti-proliferation and/or cell-ki

162 rimental data, and show that we can robustly infer model parameters using a relatively small number o

163 The inferred model parameters were then used to evaluate the

164 Our simulations show that GTmix can infer more accurate admixture networks with much smaller

165 These clone phylogenies are used to infer mutation order and clone origins during tumor prog

166 g different types of gene expression data to infer networks and its accessibility as a pipeline for n

167 ach time point separately, resulting thus in inferred networks that strongly vary across time.

168 we build a cascade deep forest classifier to infer new DTIs.

169 nisms of chromosome number reduction from an inferred nine-chromosome ancestral state: (a) chromosome

170 action networks has been shown to accurately infer novel disease associations at genes for which no d

171 Here, we infer *O. megalodon body dimensions based on anatomical

172 iteria used for miRNA target prediction were inferred on a limited number of experimentally validated

173 en, during a subsequent pre-order traversal, inferring on which edges insertion and deletion events o

174 ed by representations of associated cues and inferred outcomes in the OFC, as well as by increased HP

175 2H(2)O) hydration water (GHW) can be used to infer paleoclimate.

176 associated temporal changes is one aspect of inferring paleoenvironmental conditions.

177 We leverage the inferred patient topic mixtures to classify target disea

178 ds, fossil birds, and theropod dinosaurs, we infer patterns of brain-body co-variation in deep time.

179 mented a novel dynamical systems approach to infer patterns of regional neurodegeneration over 10 yea

180 We inferred patterns of gene flow and genetic structure usi

181 ian randomization analyses were performed to infer phenome-wide effects of free testosterone on 461 o

182 ssays has outpaced our ability to accurately infer phylogenetic relationships.

183 erties that drive ecosystem processes and to infer physiological processes in Earth system models.

184 n, hence their accumulation could be used to infer possible process instability of anaerobic digester

185 An evolving consensus, inferred preponderantly from non-human models, is that t

186 ecover lemming mandibles, which were used to infer prey species and size.

187 in established cancer pathways, and the INCM-inferred putative genetic interactions are correlated wi

188 d approaches that do not detect segments can infer relationship degrees faster than IBIS, the fastest

189 campal cells in sharp-wave/ripples represent inferred relationships that include reward, thereby "joi

190 We show that we can infer relative chromosome ordering using PCA on a thresh

191 ation on 13 well-known repeats show that the inferred repeat ranges provide good estimation to repeat

192 the responses to random inputs-still cannot infer responses to new inputs?

193 inary result that, when positive, is used to infer restoration of consciousness, often without furthe

194 or Mendelian randomization (MR) to correctly infer risk factors causing a disease.

195 variants as valid instrumental variables for inferring risk factors causing coronary artery disease (

196 ucidate the mechanism of TDMD and expand its inferred role in shaping miRNA levels in bilaterian anim

197 Inferring Rt reliably and in real-time from observed tim

198 strated on multiple viral proteins, with the inferred sectors showing close correspondences with expe

199 marginal path likelihood (MPL), a method to infer selection from evolutionary histories that resolve

200 about how it connects different concepts and infers semantic relations.

201 "Inferred sensitivity" accurately reflected retinal funct

202 Our inferred shaking intensity pattern supports the associat

203 show that OncoSig is generalizable, we first inferred SigMaps for the ten most mutated human oncoprot

204 s can be modified by disease, the ability to infer signaling pathways from condition- or patient-spec

205 A variety of techniques exist for inferring signaling pathways.

206 pes of insights, focusing on methods used to infer sociocultural aspects of human behaviour.

207 action datasets. We demonstrate that jointly inferring specificities within each dataset individually

208 t conducted by Dorie et al. could be used to infer spheroid composition and parameters associated wit

209 ic tertiary interactions, and allowing us to infer structural rearrangements that permit certain sequ

210 Furthermore, when inferring sub-European ancestry, SP clearly showed bias,

211 ngs of postsynaptic currents and potentials, inferring synaptic effects from extracellular spiking is

212 influences gene expression is important for inferring target genes from TF chromatin immunoprecipita

213 These findings infer that elevated temperatures have a profound impact

214 We infer that inhibition of nitrite oxidation resulted in h

215 tegory representation, people preferentially infer that kinds (richly structured categories) reflect

216 We infer that major shifts occurred rapidly in the aftermat

217 We infer that modified susceptibility due to natural infect

218 pared to purely hydrophobic interactions, we infer that the six M101-F99 pairs in the hexameric chann

219 linear free energy relationship analysis to infer that the transition state structurally resembles t

220 These results infer that variable fiber-type composition could account

221 We inferred that difference in reactivity, coupled with inh

222 ming events using phylogenetic distances, we inferred that duplications in cytoskeletal and membrane-

223 We inferred that goats are the ancestral hosts for BTV but

224 Previous studies have inferred that jumbo squid Dosidicus gigas support growth

225 Based on the results of this study, it was inferred that the functional characteristics of bovine M

226 We inferred that tolerant alloreactive B cells retained the

227 tructed histories of chromosome segregation, inferring that 55 (74%) embryos possessed mitotic aneupl

228 Molecular dynamics simulation infers that facet-dependent transferrin binding is also

229 can substitute for invasive bone biopsies to infer the activity of the three main steps of FGF23 regu

230 ated using a maximum likelihood procedure to infer the average number of secondary cases generated by

231 netic resonance imaging (MRI) can be used to infer the biochemical state of cartilage.

232 Using these important features we then infer the Boolean function of the target gene.

233 enetic variants as instrumental variables to infer the causal effect of a specific risk factor on an

234 iv preprints and leveraged topic modeling to infer the characteristics of various communities engagin

235 Clearly, it would be more rigorous to infer the chemical compositions of the adducts directly

236 re sequenced using whole-exome sequencing to infer the clonal evolution patterns.

237 e large or when it is possible to reasonably infer the comparative benefits or risks in settings, in

238 ectronic-structure calculations, we directly infer the coupled electron transfer, which we find to be

239 aluation task, which assesses the ability to infer the current value of specific rewards after devalu

240 genomic signal of ancient introgression and infer the divergent phylogenetic topology for the white

241 tered and noisy measurements, we are able to infer the dynamics of unobserved species, external forci

242 The ability to infer the expression state (active or inactive) of genes

243 Here, we infer the genetic basis of pelvic skeleton reduction in

244 Here, we infer the history of vertebrates through genomic compari

245 ressure or shear on the plate can be used to infer the location and size of the sphere.

246 ation times and distributions may be used to infer the mechanical properties of individual tRNA molec

247 ained from the attribute inference attack to infer the membership of a target in another genomic data

248 le data do not provide enough information to infer the mode of plague transmission in any given epide

249 Moreover, we show that PhEMD can be used to infer the phenotypes of biospecimens not directly profil

250 assess their current POP concentrations and infer the potential sources of the pollutants.

251 We show that our ability to infer the relative importance of these determinants is l

252 Network metrics are widely used to infer the roles of mutualistic animals in plant communit

253 listeners of adjective-noun descriptions to infer the speaker's intention when using an adjective (e

254 tion of candidate genes, and cannot directly infer the specific functional effects of candidate genes

255 We present a proof-of-concept method to infer the total tumour pressure, that is the sum of the

256 the primaryTranscriptAnnotation R package to infer the transcriptional start and termination sites of

257 on and variant allele frequency patterns, to infer the true copy number status of genes and genomic r

258 al, young children (4 or 5 y) in this sample inferred the nonaccidental structure was socialization.

259 This study inferred the transmission dynamics of the HIV-1 CRF55_01

260 age estimates to power a rapid approach for inferring the ancestry shared between individual genomes

261 present SVclone, a computational method for inferring the cancer cell fraction of structural variant

262 se a novel statistical framework for jointly inferring the contribution of the relevant selective and

263 nense genome provides a unique reference for inferring the early evolution of eudicots and the mechan

264 However, inferring the expression state of genes is a surprisingl

265 Inferring the genetic architecture of evolution in the f

266 Inferring the locomotor behaviour of the last common anc

267 unning transects of salt and sugar baits and inferring the magnitude of environmental supplies as the

268 By inferring the most comprehensive time-scaled phylogeny o

269 paper is to develop efficient algorithms for inferring the parameters of a general class of Gaussian

270 method called 'genomic neighbour typing' for inferring the phenotype of a bacterial sample by identif

271 cular assays to inform precision medicine by inferring the potential disease relevance of newly disco

272 However, inferring the properties of the physical environment fro

273 we show that if the experimental subject is inferring the reward distribution (to optimize some proc

274 l population codes for olfactory stimuli, of inferring the specific functions of different higher olf

275 Additionally, SpAn infers the emergent network biology of tumor microenviro

276 s proteomics and regulatory network analysis infers the interaction between astrocyte-released amyloi

277 marize approaches to identify molQTLs and to infer their causal effects.

278 eparate those subpopulations in a sample and infer their evolutionary history.

279 e rare and private spliceosomal mutations to infer their likely disease relevance.

280 For 27 genes we infer they are causal for CAD, and for 10 further genes

281 etween attributes and communities but rather infers this from data.

282 We inferred three independent introductions of rats, includ

283 % to 47.2%) of eQTLs identified by T-GEN are inferred to be functional by ChromHMM and more are delet

284 d the signaling pathways for cGAMP have been inferred to display a narrow distribution based upon the

285 ulating thymus-associated B cell clones were inferred to have originated and initially matured in the

286 and approximate aspartic acid concentrations inferred to occur at the coral calcification site.

287 live imaging with computational modeling to infer transcriptional burst parameters at single-cell re

288 enomics of Vellore isolates was performed to infer transmission and AMR events.

289 ect transmission inference (DTI) problem for inferring transmission trees that support multi-strain i

290 udy the evolution of genetic instability and infer tumor evolutionary history from experimental data.

291 We infer under natural conditions in high isoprene emission

292 GRNs were inferred using several methods, and the false discovery

293 ence of SARS-CoV-2 in New York City boroughs inferred using tests administered to 1,746 pregnant wome

294 We then infer values of epidemiological parameters by matching t

295 The phenotypic network inferred via the Hill-Climbing algorithm was used to est

296 sue as input, then in near-real time returns inferred virtual immunofluorescence (IF) images that est

297 re, we apply a marker strategy targeting the inferred Vitis core genome.

298 ine how much transmission information can be inferred when pathogen genetic diversity is low and meta

299 This study infers whether transcriptome-based groupings of tumors d

300 First, haplotypes may not be inferred with certainty from genotype data.