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1 4 (rs11105306, pooled P = 1.02 x 10(-16)) is intronic.
2 ng a mouse model engineered with a noncoding intronic 10 bp deletion (del10) in Hgf Male and female m
3 hich explains its known interaction with the intronic 3 site of NUMB exon 9 contributing to regulatio
7 nd genome sequencing to identify a biallelic intronic AAGGG repeat expansion in the replication facto
12 n neuroblastoma cells, we showed that nELAVL intronic and 3' UTR binding regulates human RNA splicing
13 RNA sequencing revealed that PSPC1 binds to intronic and 3'-untranslated regions of a number of adip
15 on signals associated with upstream, exonic, intronic and downstream genomic loci from A. mellifera M
16 discovered that the overwhelming majority of intronic and exonic RE are expressed in the same orienta
18 ation of functional RBP-binding sites within intronic and exonic sequences of regulated pre-mRNA.
19 A (IVS-AAA) that completely matched both the intronic and exonic U1 binding sequences of the mutated
21 ntify 1775 multi-exonic transcripts from 561 intronic and intergenic haploblocks associated with 392
22 ions and sufficient resolution in the larger intronic and intergenic regions to identify copy number
23 SNPs) and associated haplotype blocks are in intronic and intergenic regions, hindering their functio
26 erentially used heart failure enhancers were intronic and primarily localized within the first intron
27 V] rs12614435; p = 6.76 x 10(-18)) comprised intronic and several highly correlated missense variants
28 ge, named APAlyzer, for examining 3'UTR APA, intronic APA and gene expression changes using RNA-seq d
32 nign variants in synonymous (AUC = 0.88) and intronic (AUC = 0.83) public datasets, dismissing benign
33 elete candidate REs, we showed that a strong intronic bipartite RE selectively governs Cacna1g expres
34 Mutant SF3B1 recognizes an aberrant, deep intronic branchpoint within BRD9 and thereby induces the
41 s and sequences, and (ii) thousands of novel intronic circular RNAs (IcircRNAs) are expressed in cell
43 methylated regions, including CNS1 and CNS2, intronic cis-regulatory elements in the Foxp3 locus.
44 In the same animals, methylation of four intronic CpG sites was decreased, amplifying glucose-ind
45 signal for rs1358071 within the MAPT region (intronic=CRHR1, p=4.91x10(-7)) with the effect allele ta
46 roach, we explored a clinically translatable intronic CRISPR (clustered regularly interspaced short p
50 transcript is dependent on the actions of an intronic cytosine (C)-rich splice regulatory determinant
58 ChIP analyses, we show that SOX2 binds to an intronic domain of the PTCH1 locus to regulate PTCH1 exp
59 ntified a novel association of rs11693320-an intronic DPP10 SNP-with FVC when incorporating an intera
60 overlapping an evolutionary constrained Tst intronic element and the other residing in the seed regi
63 is suppressed in CHF via inhibition of AT2R intronic enhancer activity, leading to lowered muscle re
64 ture of Snorc and revealed dependency on the intronic enhancer binding of SOX9 for transcription.
67 , we report a bimodal activity in the Mettl1 intronic enhancer with components responsible for PTH-me
68 uring Treg differentiation, a CpG-rich Foxp3 intronic enhancer, conserved noncoding sequence 2 (CNS2)
75 ley employing two alternative promoters, one intronic/exonic, to generate two sequence-overlapping bu
76 fixation changed the relative proportions of intronic/exonic/untranslated RNA captured by RNA-seq for
77 t of T(reg) cell differentiation required an intronic Foxp3 enhancer, the conserved noncoding sequenc
78 e sequencing, we identified loss-of-function intronic fusion events in one SMARCB1 allele with concur
81 -chondrogenic progenitors - by binding to an intronic GGAA-microsatellite, which promotes EwS growth
90 gle nucleotide polymorphism (SNP; rs4888378, intronic in CFDP1) in Progressione della Lesione Intimal
91 nd functional validation identified a common intronic indel, rs144361550 (-/GGGCCC; r(2) = 0.947 with
92 nditional alleles in zebrafish by generating intronic insertions via in vivo homologous recombination
94 e differentiation, the preferred targets are intronic/intergenic sequences with enhancer-like activit
95 es that eCLIP resolves AQR association after intronic lariat formation, enabling identification of br
97 and tumours is produced by exaptation of an intronic LINE-2A (L2A) endogenous retroelement in the CD
101 non-exonic variants and provides examples of intronic loss-of-function variants with pathological rel
102 tly, since miCLIP data reveal Sxl as a major intronic m(6)A target, and female-specific Sxl splicing
103 found that FTLD-Tau neurons, either with an intronic MAPT mutation or with an exonic mutation, devel
104 at PIM3 repression is mediated by miR-33, an intronic microRNA encoded within the SREBP loci, the exp
106 Here, we describe a novel method based on intronic MiMIC insertions described in Nagarkar-Jaiswal
108 im-trained mice, upregulation of miR-423-5p (intronic miR) and its host gene, NSRP1, is driven by an
111 XR) activators promote the expression of the intronic miR-7-1 in vitro and in vivo, along with its ho
112 data unveil the intricate interplay between intronic miRNA and their host transcripts in the modulat
114 ing of a long noncoding RNA FTX and multiple intronic miRNA, was highly upregulated in cancer, and co
115 en the expression of CDK4/6 and miR-149* and intronic miRNA-6883-5p encoding the clock gene PER1 in c
117 ty at promoters, rather than piggybacking of intronic miRNAs on sex-biased protein-coding genes.
118 suggests that the production of non-stop and intronic mRNA isoforms may represent a form of negative
120 3A mutation carriers presented the same deep-intronic mutation (c.1909+22G>A), which activates a cryp
121 other missense mutation (p.Gly548Ser) and an intronic mutation affecting splicing as demonstrated by
123 For example, there are known cases where an intronic mutation disrupts the splicing of not only the
124 tructural variant analysis, we identified an intronic mutation in a mitochondrial-associated gene (Mr
126 The most frequent genetic cause of LCA is an intronic mutation in CEP290 (c.2991 + 1655A > G) that cr
127 airments in hematopoiesis associated with an intronic mutation in GATA1 that is 24 nucleotides upstre
128 hotoreceptors are especially sensitive to an intronic mutation in the cilia-related gene CEP290, whic
130 We discovered that XLPDR is caused by an intronic mutation that disrupts the expression of POLA1,
132 equencing (WGS) identified a homozygous deep intronic mutation, c.254-649T > G, predicted to generate
133 ized mutant Cep290 mouse model, carrying the intronic mutation, showed a statistically significant re
136 in POLR3A-related syndromes, especially when intronic mutations are present, and thus can no longer b
138 revealed that synonymous, non-synonymous and intronic mutations frequently alter the inclusion levels
146 bust to deletion of any intergenic or deeply intronic non-coding region, indicating that proximal reg
147 s), including those targeting intergenic and intronic non-coding regions that eluded previous exome f
149 or each sequence entry and characterizes the intronic parameters including number, size, sequence com
150 ave previously reported that the use of this intronic PAS depends on the nuclear polyadenylation fact
154 utations, including the effect of novel deep intronic pathogenic mutations on RTTN transcripts, allow
155 Genetic analyses revealed association of intronic PCSK6 variant rs1531817 with maximum internal c
156 he affected status in all 3 families: a rare intronic PDZD8 c.872+10A>T variant and a novel missense
157 y HIPSTR (Heterogeneously expressed from the Intronic Plus Strand of the TFAP2A-locus RNA), a novel l
159 vered a novel stress-specific cis-element in intronic poly(A) sites used in drought- and heat-stresse
163 , inhibition or loss of CDK12/CDK13 triggers intronic polyadenylation site cleavage that suppresses t
165 otype correlates with an increased number of intronic polyadenylation sites, a feature especially pro
169 In addition, processing of an alternative intronic promoter of miR-9-5 was validated by 5' RACE PC
171 segmental duplication of a nearly identical intronic region +2.5 kb downstream of the TSS, and this
172 The abnormal transcript with the retained intronic region coded a truncated protein that lacked th
173 eased transcription mediated directly by the intronic region containing the rs7554511 C variant.
176 1-rs11084307, P = 1.4 x 10(-6)) covering the intronic region of CACNG8 to be significantly associated
177 8283A > C polymorphism located in the DNMT3A intronic region of chromosome 2p with no impact in messe
178 ssociation signals are present in the TCF7L2 intronic region of Hispanics, one of which is tagged by
179 -nucleotide polymorphism (rs12979860) in the intronic region of interferon-lambda4 (IFNL4) is a stron
180 s demonstrated that FLRL2 was located in the intronic region of the Arntl gene, and a luciferase assa
181 or depression, and a haplotype located in an intronic region of the L-type voltage-gated calcium chan
182 (formerly SPRY4-IT1), which lies within the intronic region of the SPRY4 gene, is up-regulated in hu
183 functional genetic approach to show that the intronic region spanning rs3780181 exhibited 1.6-7.6-fol
184 zed the histone modification profiles of the intronic region surrounding rs12041331 and identified H3
187 he transient receptor potential melastatin 1 intronic region, regulates oxidative phosphorylation and
189 nigene library with degenerate regions in 3' intronic regions (3.4 million individual minigenes) was
190 pproximately half of all miRNA reside within intronic regions and are often cotranscribed with their
196 the nucleus, hybridization predicted against intronic regions of pre-mRNAs was tested and confirmed.
197 association study found two variants in the intronic regions of the PSAP saposin D domain (rs4747203
198 AKAP95 binds preferentially to proximal intronic regions on pre-mRNAs in human transcriptome, an
199 istributed evenly across distinct exonic and intronic regions, and are difficult to predict a priori.
200 n coding and non-coding exons, as well as in intronic regions, and the mutational pathomechanisms inc
201 hat FTO binds preferentially to pre-mRNAs in intronic regions, in the proximity of alternatively spli
202 regions, map to 3'-untranslated regions and intronic regions, share common sequence motifs and overl
209 sely define the positions from which certain intronic regulatory sequences increase mRNA accumulation
210 lgorithms identified a recessively inherited intronic repeat expansion [(AAGGG)(exp)] in the gene enc
211 ight into potential mechanisms by which this intronic retroelement may induce transcriptional interfe
212 w isoform of ACE2, generated by co-option of intronic retroelements as promoter and alternative exon.
214 using mRNA stability measurements as well as intronic RNA expression analysis are consistent with a t
216 These studies show that PGC-1alpha binds to intronic RNA sequences, some of them controlling transcr
218 easurements of total and chromatin-bound FLC intronic RNA, a methodology appropriate for analyzing el
224 also highlight the importance of evaluating intronic sequence when a single, definitively pathogenic
225 e or partial exon skipping, exonification of intronic sequence, loss or gain of exonic and intronic s
226 RNA structures (ncRNAs) are embedded within intronic sequences and are contributing to phenotype and
227 coding the extracellular domain and flanking intronic sequences are inserted into the switch region.
228 ow that interaction of PTBP1 with downstream intronic sequences can activate natural cassette exons b
229 Bimodal exons are flanked by more conserved intronic sequences harboring distinct cis-regulatory mot
230 otein, Fox-1 homolog 2 (Rbfox2), which binds intronic sequences in front of exon 12 independently of
231 ovo RNA structure prediction tools to screen intronic sequences in S. cerevisiae and 36 other fungi.
233 ge fraction of RNAs bound to PGC-1alpha were intronic sequences of genes involved in transcriptional,
236 increased type 2 diabetes risk linked to an intronic single nucleotide polymorphism in CDKAL1 In a m
240 evels and enables detection of NAD(+)-capped intronic small nucleolar RNAs (snoRNAs), suggesting NAD(
241 SNPs at the remaining three loci include an intronic SNP in FOXP1 at locus 3p13, an intergenic SNP a
242 d use CRISPR mutagenesis to validate that an intronic SNP in prominin regulates its editing levels.
244 ved in European subjects was for the imputed intronic SNP rs1830298 in ALS2CR12 (telomeric to CASP8),
245 ean haplotype specifically includes the eQTL intronic SNP rs62436463 that must have arisen after the
248 ymorphisms (SNPs), exonic SNP rs12422149 and intronic SNPs rs1789693 and rs1077858, were genotyped in
250 R sequencing, the method found three cryptic intronic splice variants (one known and two experimental
252 tion, likely due to the action of a putative intronic splicing enhancer present in intron 25, which a
253 minigenes, we identified multiple exonic and intronic splicing enhancers and silencers that regulate
254 ntronic sequence, loss or gain of exonic and intronic splicing enhancers and silencers, complete intr
256 2] and c.920delG [p.Gly307Alafs( *)11]), one intronic splicing mutation (c.1164+5C>T), and six missen
257 es, who had RTS type 1 and identified a deep intronic splicing mutation of the ANAPC1 gene, a compone
258 ly regulated through a complex network of an intronic splicing silencer (ISS), a bipartite exonic spl
259 sly to a single bipartite motif of the human intronic splicing silencer ISS-N1, which controls surviv
260 n antisense oligonucleotide that targets the intronic splicing silencer N1 (ISS-N1), located downstre
261 ronic variants and illustrate versatility of intronic SSOs that target pseudo-3'ss to modify gene exp
263 s-regulatory elements, including a noncoding intronic telencephalon enhancer of DCHS1 The functions o
266 % confidence interval = 1.06-1.13), which is intronic to PNKD (paroxysmal non-kinesigenic dyskinesia)
268 t one of the 83 replicated CpGs, cg11024682 (intronic to sterol regulatory element binding transcript
269 283 (odds ratio (OR)=4.32, P=1.79 x 10(-8)), intronic to transcripts of SLCO1B3 and SLCO1B7, members
273 a genetic disease caused by expansion of an intronic trinucleotide repeat in the frataxin (FXN) gene
274 interactions are frequently localized to the intronic U-rich polypyrimidine tracts (PPT) located 5' t
275 omplete nascent transcriptome; it is rich in intronic unprocessed transcript, as well as long interge
276 s to thousands of mRNA precursors, mainly at intronic uridine-rich sequences and affects their splici
278 dentified a previously unreported pathogenic intronic variant in CHM in two males with choroideremia.
279 ntified significant associations of a common intronic variant in HTRA1, rs2293871 using single varian
280 mon variants were identified: rs10791286, an intronic variant in OPCML (P=9.89 x 10(-6)), and rs77001
282 blished GWAS of HTS, we report that a common intronic variant in the CSMD1 gene is associated with re
283 08 95% CI 1.05-1.11, Pmeta=3.12 x 10-10), an intronic variant in the SMAD3 gene, which is known to pl
284 mphoblastic leukemias identified a recurrent intronic variant predicted to cis-activate the TAL1 onco
286 ifferent polyadenylation sites, including an intronic variant that codes for a protein isoform contai
287 fibroblasts cultured from a patient with an intronic variant to determine the impact of the mutation
290 breaks, demonstrate functional plasticity of intronic variants and illustrate versatility of intronic
291 isms will be key to defining the role of the intronic variants and non-coding RNA for pain in patient
292 onal genomes.While non-coding synonymous and intronic variants are often not under strong selective c
293 a sets we observe significant association of intronic variants in ARHGAP15 (Rho GTPase-activating pro
294 pastic ataxia family turned our attention to intronic variants in POLR3A, a gene previously associate
298 s, including copy number variants (CNVs) and intronic variants, as pathogenic, likely pathogenic, or
299 nymous variants), two promoter variants, 133 intronic variants, two 3' UTR variants and 23 intergenic