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1 bacterial recombination site that is not an inverted repeat.
2 rgeted sequences resembling the Ty3 terminal inverted repeat.
3 r the HetR protein so far, a seven-base pair inverted repeat.
4 onucleotide corresponding to the Mu terminal inverted repeat.
5 ing transcription factor binding sites or an inverted repeat.
6 rangement, including large expansions of the inverted repeat.
7 upstream of tbpA and separated from it by an inverted repeat.
8 ymmetry centred on a conserved 5'-TAC/GTA-3' inverted repeat.
9 e polintovirus PolB gene along with terminal inverted repeats.
10 namely sites of convergent transcription and inverted repeats.
11 multiple genes that contain poorly conserved inverted repeats.
12 y in regions that contain numerous tandem or inverted repeats.
13 as does a pair of synthetically constructed inverted repeats.
14 le the HTH domain canonically recognizes two inverted repeats.
15 repeats and is demarcated by 8-bp imperfect inverted repeats.
16 ends to underestimate the expected number of inverted repeats.
17 ter families, many of which contain internal inverted repeats.
18 n transposon target sites and their terminal inverted repeats.
19 tation, can generate a substantial excess of inverted repeats.
20 gments and genes interspersed with noncoding inverted repeats.
21 erated by flanking a DNA sequence with short inverted repeats.
22 ate short inversions, some flanked by paired inverted repeats.
23 L) and a unique short region (US) flanked by inverted repeats.
26 ostly in intergenic and intron regions at an inverted repeat 1 motif in both groups, but also cluster
27 d repeat spaced by one nucleotide DNA motif, inverted repeat-1 (5'-AGGTCAcAGACCT-3'), as a likely FXR
28 ium coupled cotransporters of the five-helix inverted repeat (5HIR) superfamily use an alternating ac
33 Rather, they are flanked by nearly identical inverted repeats and enclosed within direct repeats, sug
34 nontransposon sequences have longer terminal inverted repeats and higher GC content in terminal and s
35 o demonstrate a novel method for identifying inverted repeats and inversion variants, both of which c
37 aining segment, five 9-bp direct repeats, an inverted repeat, and a sigma(A)-dependent promoter for t
38 at involves both homology-driven events, via inverted repeats, and microhomologous or nonhomologous e
42 n an uncharacterized protein that we termed "Inverted Repeat Binding Protein (IRBP) 18" and its partn
43 ing of tandem copies of the ethanol receptor inverted repeat binding site, in combination with a mini
44 ls, slightly elevated templated mutations at inverted repeats but had no effect on deletions, simple
45 The edited cytidines are often flanked by inverted repeats, but are largely distinct from those de
46 ation that closed-circular DNA containing an inverted repeat can release the free energy stored in ne
48 its inherent instability in genomic DNA, the inverted repeat catalyzes spontaneous self-excision, res
49 s present in the cydDC promoter, and a 10-bp inverted repeat (CGGTGGTACCGGTACCACCG) was required for
50 consist entirely of imperfect 69-bp terminal inverted repeats characteristic of the Foldback class of
51 terminal three nucleotides of the P-element inverted repeats complement and restore the original TSM
52 our of the breakpoint regions included large inverted repeats composed of repetitive gene clusters an
54 transgenic loci have two T-DNA copies in an inverted repeat configuration, centered at the right bor
55 sis of closely linked transposon ends in the inverted-repeat configuration and therefore suppresses t
56 l density analysis determined that the large inverted repeats constitute a recombination hot spot.
60 rocess where one copy of a small, imperfect, inverted repeat corrects the other copy via strand misal
61 he absence in M. truncatula of the prominent inverted repeat cpDNA sequence found in most plant speci
62 the target gene and sequence features of the inverted repeat did not reveal any factors capable of pr
63 Transporters from bacteria to humans contain inverted repeat domains thought to arise evolutionarily
66 is initiated by restricted expression of an inverted-repeat dsRNA specifically in the Arabidopsis (A
67 ed His-tagged RpaR (His(6)-RpaR) binds to an inverted repeat element centered 48.5 bp upstream of the
75 anism by which RNAs transcribed from the CHS inverted repeat form aberrant double-stranded RNAs that
76 a precursor in which an imperfectly matched inverted repeat forms a partly double-stranded region.
77 gestive of an evolutionary antecedent of the inverted repeats found within the subunits of many membr
79 sion of GCRs in other studies, we found that inverted repeat fusion has a profile of genetic regulati
82 e find that two checkpoint pathways suppress inverted repeat fusion, and that their activities are di
86 alensis and described proliferation of small inverted repeats (hairpins) that occurred in it since th
87 hybrid nixA-ureA promoters demonstrated that inverted repeat half-sites, spacers, and flanking DNA ar
89 ing of these cavities is synchronized by the inverted repeat helices 3 and 8, providing the structura
93 h operons requires YtrA, which recognizes an inverted repeat in front of its own operon and in front
94 leads to nicking of ICEBs1 between a GC-rich inverted repeat in oriT, and NicK was the only ICEBs1 ge
95 vated by BmaR1 and octanoyl-HSL, and a 20-bp inverted repeat in the bmaI1 promoter is required for bm
96 more, in human Colo320DM cancer cells, a DNA inverted repeat in the genome marks the border between a
97 e report here that a specific pair of nearby inverted repeats in budding yeast fuse to form a dicentr
98 hown that there is a large excess of perfect inverted repeats in many prokaryotic genomes but not in
100 mation of large DNA palindromes and that DNA inverted repeats in the genome determine the efficiency
102 eaks (DSBs) introduced a large distance from inverted repeats in the yeast (Saccharomyces cerevisiae)
105 However, like RDR6, SDE5 is not involved in inverted repeat-induced transgene silencing or the bioge
109 wn to be several times slower in the plastid inverted repeat (IR) compared with single-copy (SC) regi
111 wo genes (clpP, rpoC1), and expansion of the inverted repeat (IR) into both large and small single-co
112 A specific RhpR-binding site containing the inverted repeat (IR) motif GTATC-N6-GATAC, was mapped to
113 The total genome size is 162,321 bp, with an inverted repeat (IR) of 27,273 bp, large single-copy (LS
117 s motif overlaps with a previously described inverted repeat (IR) that is crucial for cap expression.
118 a long noncoding RNA (lncRNA) containing an inverted repeat (IR) with >80% identity to W1-COE The Iw
120 RNA interference suppression of this gene in inverted-repeat (ir)JAZh plants deregulated a specific b
122 eletion mutants, we found that the number of inverted repeats (IRs) flanking the promoter is variable
123 enetic instability at palindromes and spaced inverted repeats (IRs) leads to chromosome rearrangement
124 ,528 bp in length, composed with one pair of inverted repeats (IRs) of 26,819 bp, which were separate
128 s suggests that the reported large excess of inverted repeats is due to repeats found in intergenic r
130 n many chloroplast genomes, the inference of inverted repeats is needed in chloroplast phylogeny anal
131 ncatula is a legume species belonging to the inverted repeat lacking clade (IRLC) with trifoliolate c
136 er, in a large subclade of the Fabaceae, the inverted repeat-lacking clade (IRLC), of which pea is a
138 nce analysis, we have now identified a 77-bp inverted repeat located upstream (206 bp) of the start c
139 BirA has been reported to bind an imperfect inverted repeat located upstream of the biotin synthesis
141 nding sites reveals that the tetranucleotide inverted repeats long believed to be important for C-pro
143 Phaseoleae, two in Dalbergieae, two in the 'inverted repeat loss' clade, and one in the Robinieae, w
146 ing Z-DNA motifs, quadruplex-forming motifs, inverted repeats, mirror repeats and direct repeats and
147 faster and more sensitive than the existing inverted repeat/MITE detection tools based on numerical
148 co-transport proteins that use a five-helix inverted repeat motif have recently emerged as one of th
152 nsable for GC-induced evolutionary conserved inverted repeated negative GC response element (IR nGRE)
153 lusive for GC-induced evolutionary conserved inverted repeated negative GC response element (IR nGRE)
157 afQ-(DinJ)2-YafQ or a DinJ dimer at a single inverted repeat of its recognition sequence that overlap
158 the central axis of the channel, without the inverted repeat of mammalian-type urea transporters.
159 nation, a mutagenesis cassette containing an inverted repeat of selection marker(s) is integrated int
160 presence of the known CmeR-binding site, an inverted repeat of TGTAAT, in the promoter region of Cj0
163 cp genome size is 151,173 bp with a pair of inverted repeats of 27,093 bp separated by small and lar
164 facing conformation with a core structure of inverted repeats of 5 TM helices (TM2 to TM6 and TM7 to
167 inear elements, at least one of the terminal inverted repeats of pBSSB1 is non-essential, but that a
169 es and binds to a DNA sequence consisting of inverted repeats of the pentameric sequence nGAAn, known
170 nt cassettes, the presence of nearly perfect inverted repeats of ~100 bp near the 5' end of vlsE, and
171 s been reported for ectopic HR events (e.g., inverted repeats or between plasmids), Rad51 has been th
172 enic lines containing short gene segments in inverted repeat orientation designed to reduce expressio
173 ntly formed by intrachromosomal NAHR between inverted repeat pairs comprising one amplicon on Yp and
176 revealed the presence of AT-rich direct and inverted repeats previously reported to function as DegU
182 s that enable insertion of transgenes in the inverted repeat region of the plastome between the trnV
183 w that these two genes, as well as the 77-bp inverted repeat region, are cotranscribed with the capsu
184 Partly because of independent losses of one inverted repeat region, Orobanchaceae plastomes vary 3.5
186 lation levels in the internal and terminated inverted repeat regions of these elements, which might b
188 DSB initiates a pairing interaction between inverted repeats, resulting in the formation of large di
189 pulated genetically to express gene-specific inverted-repeat RNA sequences exhibited significant redu
190 , non-canonical promoters consisting of 9 bp inverted repeats separated from a -10 hexamer by 19 bp.
191 of interest: an RNA/DNA hybrid domain and an inverted repeat sequence capable of forming a stem-loop
192 Ser beta-sheet that binds specifically to an inverted repeat sequence distinct from those recognized
193 sin occurred via binding directly to a short inverted repeat sequence in the intergenic region overla
195 otein in various genetic backgrounds, and an inverted repeat sequence in the promoter of hetP was nec
196 inal domain of AcrIIA13-AcrIIA15 binds to an inverted repeat sequence in the promoter of these Acr ge
197 R binds specifically and tightly to an 11-bp inverted repeat sequence in the promoter regions of the
198 tprinting demonstrated binding of CouR to an inverted repeat sequence that overlaps the -10 region of
199 sses a single operon by binding to a perfect inverted repeat sequence, whereas HpNikR binds to promot
202 owed in Saccharomyces cerevisiae that nearby inverted repeat sequences ( approximately 20-200 bp of h
204 n integrate both short oligonucleotides with inverted repeat sequences and a 2.8 kb excised mini-casp
205 taining many copies of the viral genome with inverted repeat sequences at the junctions between monom
206 " class of mutations that arise in imperfect inverted repeat sequences by DNA-strand misalignments du
208 posase binds specifically to ISY100 terminal inverted repeat sequences via an N-terminal DNA-binding
211 unique long (UL) region and a segment of the inverted repeat short (IRS)/unique short (US) region.
212 While some Phantom elements have terminal inverted repeats similar in length and structure to Muta
213 Selected repetitive sequences termed short inverted repeats (SIRs) have the propensity to form seco
215 man miR-29a promoter identified an imperfect inverted repeat spaced by one nucleotide DNA motif, inve
216 of Manduca sexta grew faster when consuming inverted-repeat stable transformants (irAGO8) plants but
219 None of the rearranged sequences showed the inverted repeat structure characteristic of BFB; instead
220 sporters (SLC26Dg and UraA), to have a 7 + 7 inverted repeat structure with anion transport initiated
221 functional relevance of the pseudosymmetric inverted-repeat structures of the antiporter-like subuni
222 o Mutator elements, some display subterminal inverted repeats (sub-TIRs) and others have more complex
223 short ( approximately 30- to 40-nucleotide) inverted repeats, such as Alu elements, are sufficient t
224 nt Repeat Database and searches for flanking inverted repeats suggest that the high incidence of disp
228 forms a tetramer, which tightly binds to an inverted-repeat target sequence overlapping with the pro
229 matin at centromeres I and III is flanked by inverted repeats termed IRCs, which are required for pro
231 s of the complete regulon identified a 15 bp inverted repeat that functions as a high-affinity bindin
233 entifies a previously unknown pair of 5' UTR inverted repeats that act by altering the relative fimA
234 several homonucleotide runs as well as small inverted repeats that are able to form strong secondary
235 epeats is general; we found that many nearby inverted repeats that are present in the yeast genome al
237 e DUP-TRP/INV-DUP structures are mediated by inverted repeats that can be separated by >300 kb, a gen
238 ast, the smaller, but significant, excess of inverted repeats that we report in protein coding sequen
239 ztransib has 3518 bp including a 5' terminal inverted repeat (TIR) of 552 bp, a promoter sequence of
240 TEs) are short DNA transposons with terminal inverted repeat (TIR) signals and have been extensively
241 he transposase activities including terminal inverted repeat (TIR) specific DNA-binding activity, DNA
242 inal repeat (LTR) retrotransposons, terminal inverted repeat (TIR) transposons, short TIR transposons
243 ransposase activities, including 5'-terminal inverted repeat (TIR)-specific binding and assembly of a
244 the transposase domain possesses 5'-terminal inverted repeat (TIR)-specific DNA binding, DNA looping,
245 ucleotide duplexes derived from the terminal inverted repeats (TIR) of the A. boonei casposon as well
247 get site duplications and a pair of terminal inverted repeats (TIRs) resembling V(D)J recombination s
248 tion bias toward noncoding regions, terminal inverted repeats (TIRs), target site duplications, and p
250 superfamily, it has unusually long terminal inverted-repeats (TIRs) that resemble those of Foldback
251 t core of 10 TMSs is made of two intertwined inverted repeats (TMS1-5 and TMS6-10) that are followed
252 can also be shortened from the native 50-bp inverted repeat to 26 bp; thus, the Agrobacterium hairpi
255 lineate two pathways that spontaneously fuse inverted repeats to generate unstable chromosomal rearra
256 ow that this T-DNA configuration produces an inverted repeat transcript and that small interfering RN
257 ardtii, sRNAs derived from genome-integrated inverted repeat transgenes, perfectly complementary to t
260 flanking a transposable element (a miniature inverted repeat transposable element) insertion in the S
265 217 insertions of 18 Stowaway-like miniature inverted-repeat transposable element (MITE) families pre
266 onia solani and found that Tourist-miniature inverted-repeat transposable element (MITE)-derived smal
272 share all the classic features of miniature inverted-repeat transposable elements (MITEs), including
273 sons and retrotransposons, such as miniature inverted-repeat transposable elements (MITEs), long term
275 genome has features in common with miniature inverted-repeat transposable elements (MITEs): high A +
277 (PEGs), which were associated with miniature inverted-repeat transposable elements, imprinted differe
280 high propensity to execute a U-turn at small inverted repeats (up to 1 in 40 replication events).
282 gions; identified the ISs' possible terminal inverted repeats, usually flanked by direct repeats; and
287 t DNA is 160,149 bp in size with a 21,822-bp inverted repeat, whereas NIES293 (West Pacific) chloropl
288 acterium liquefaciens comprises a five-helix inverted repeat, which is widespread among secondary tra
289 ment and a 73-bp sequence were identified as inverted repeats, which could explain the possible mecha
290 ding sequences they both detect an excess of inverted repeats, which is much lower than previously re
291 ation repair (PRR) pathway prevent fusion of inverted repeats, while genes in the translesion branch
293 tor sites having more than one 5'-TAC/GTA-3' inverted repeat with implications in vivo for a mechanis
294 ally high GC content, each containing a long inverted repeat with one or two protein-coding genes and
297 footprint data in E. coli generally contains inverted repeats with significantly (p < 0.05) greater p
300 specific, imperfect DNA hairpin formed by an inverted repeat within the upstream essential element (U