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1 xpression profiles of a previously generated isogenic 22Rv1 prostate cancer model of radioresistance
2 ic combinations shows similar affinities for isogenic alleles at 22 degrees C, but very poor interact
3 h we find can be targeted therapeutically in isogenic and primary DIPG cell lines with H3.3K27M mutat
4 otypically stable, are innately immortal and isogenic, and can be derived in an array of differentiat
5 enotypic plasticity, it is often essentially isogenic, and it has well-documented molecular and cellu
6 ound that individuals within strains are not isogenic, and there are differences in the levels of gen
7 in vitro and in vivo, within both engineered isogenic astrocytes and primary patient-derived model sy
8 , PMN recruitment to wounds infected with an isogenic AT-deficient S. aureus strain was unimpeded, ex
10 roresistance, in which seemingly susceptible isogenic bacterial populations contain resistant sub-pop
11 eciation of gene expression heterogeneity in isogenic bacterial populations, affordable and scalable
14 ace proteins is dramatically remodeled in an isogenic breast epithelial cell line stably expressing a
15 enerated a gradient in tension over multiple isogenic budding yeast cell lines by genetically alterin
17 in MA high/low drinking mice, as well as in isogenic C57BL/6J mice that varied in their MA preferenc
20 sis-defective and -resistant cancer cells or isogenic cancer cells, via calcium mobilization through
21 ype, we compared the protein profiles of two isogenic canine OS cell lines, POS (low metastatic) and
22 served significantly reduced survival of the isogenic carrier mutant compared to that of the parental
25 ivity against colon cancer cell lines and an isogenic cell line pair reporting on the status of APC-d
26 ure for oncogenic KRAS derived from a murine isogenic cell line with a coexpression network derived b
27 ly no methods for the discrimination between isogenic cell lines (cell lines of the same genetic orig
29 V5-FOXL2(WT)- and V5-FOXL2(C134W)-inducible isogenic cell lines and performed chromatin immunoprecip
34 r survival of more than 300 kinase-deficient isogenic cell lines to a diverse panel of DNA-damaging a
35 backgrounds, we screened two pairs of BRCA2 isogenic cell lines with DNA-repair-focused small hairpi
46 s bind only to the latter, we tested whether isogenic cell populations respond in a non-uniform manne
48 significant phenotypic differentiation among isogenic cells frequently occurs, with the resulting het
51 synthase genes, suggesting that some of the isogenic cells in a population might produce autoinducer
52 The authors demonstrate that the majority of isogenic cells in bacterial populations survive lethal a
53 tion of the expression level of a gene among isogenic cells in the same environment, and has two sour
54 ysico-chemical principles that determine how isogenic cells spontaneously self-organize into structur
58 NAs isolated from intracellular DSM20231 and isogenic clpC mutant cells identified alterations in tra
60 /eod1-2 mutants were already larger than the isogenic Col-0 wild type, but this phenotype was trigger
61 r, we used precise gene targeting to produce isogenic colon cancer cell lines with a knockout/rescue
63 based genome engineering facilitates precise isogenic comparisons of variants across genetic backgrou
65 establishing OFCD study models by generating isogenic control BCOR-WT iPSCs versus BCOR-mut iPSCs.
66 9+/-29 ms; n=10) compared with the patient's isogenic control hiPSC-CMs (434+/-30 ms; n=8; P<0.05).
67 ficantly longer (622+/-11 ms; n=92) than the isogenic control hiPSC-CMs (453+/-5 ms; n=62; P<0.0001).
69 ived RAF1(S257L/+) and CRISPR-Cas9-generated isogenic control inducible pluripotent stem cell (iPSC)-
71 r cefotaxime was 3-fold higher than for near-isogenic control isolates, consistent with a first step
72 r cefotaxime was 3-fold higher than for near-isogenic control isolates, consistent with a first-step
74 different methods have been used to generate isogenic control lines using clustered regularly intersp
75 Using patient-specific hiPSC-CM mutant and isogenic control lines, we demonstrate that the CACNA1C-
76 press a long-acting analogue of GLP-1 or the isogenic control microbe which solely harbored the pNZ44
77 ic p.Gly23Val-MRAS variant in patient cells (isogenic control) and to introduce the pathogenic varian
78 on and characterization of patient-specific, isogenic control, and disease modeled induced pluripoten
81 n neuritic length and complexity relative to isogenic controls as well as contorted axons with Tau-po
82 milial AD mutations vs. their wild-type (WT) isogenic controls in order to characterize the aberrant
83 or the SNCA-A53T mutation contrasted against isogenic controls, we evaluated the consequences of alph
84 By comparing patient-derived MNs and their isogenic controls, we show that ALS-causing mutations in
85 ipotent stem cell (iPSC)-derived neurons and isogenic controls, we show that the FTD-causing V337M ta
86 M model combined with CRISPR/Cas9-engineered isogenic controls, we uncovered that TnT-R173W destabili
94 Here we use primary H3K27M tumor lines and isogenic CRISPR-edited controls to assess H3K27M effects
95 on, we profile microglia differentiated from isogenic, CRISPR-modified TREM2-knockout induced pluripo
96 erived optic vesicles (OVs) when compared to isogenic cultures of hiPSC-derived forebrain neurosphere
97 tion generates a mosaic of methylomes within isogenic cultures, which we formalize as 'intercellular
101 in Arabidopsis thaliana tetraploid lines and isogenic diploids, we show that transcriptome abundance
102 otent stem cell (hPSC) platform, in which 30 isogenic disease lines are pooled in a single dish and d
106 atin interactions, we established stable and isogenic Drosophila epilines that carry alternative epia
110 effects of mutant ER, we developed multiple isogenic ER-mutant cell lines for the most common LBD mu
111 are genome-wide methylation patterns between isogenic ESC and EGC lines to define epigenetic similari
112 ardiomyocytes, and compared with healthy and isogenic (established by CRISPR/Cas9-based mutation corr
114 se FANCD2-dependent mechanisms, we generated isogenic FANCI-, FANCD2- and FANCI:FANCD2 double-null ce
115 ts in the linear sorting of a set of diverse isogenic female lines, unambiguously demonstrating the h
116 tomachs from mice infected with a mixture of isogenic, fluorescent H. pylori strains with unprecedent
117 t the transcriptome and proteome profiles of isogenic FMRP-deficient neurons demonstrate perturbation
118 immature spike tissues in three lines nearly isogenic for Q revealed over 3000 differentially express
125 nstructed and characterized a large panel of isogenic H. pylori strains that differ primarily in the
129 cosylation pathways to generate a library of isogenic HEK293 cells with combinatorially engineered gl
135 dsRNA) bacteriophage phi6 (wild type and two isogenic host range mutants) on the novel host Pseudomon
139 ent that, we used genome editing to generate isogenic human embryonic stem cells (hESCs) harboring cl
140 Here we have used CRISPR/Cas9 to generate isogenic human embryonic stem cells (hESCs) that lack th
142 vance to both PROS and cancer, we engineered isogenic human induced pluripotent stem cells (iPSCs) wi
143 Here, we apply a genetic approach, using isogenic human induced pluripotent stem cells, to evalua
147 ce indels in exon 3 of FMR1, we generated an isogenic human pluripotent stem cell model of FXS that s
149 nistic role of SNCA in the nucleus utilizing isogenic human-induced pluripotent stem cells-derived ne
150 In vitro studies of patient-derived and isogenic human-pluripotent-stem-cell-derived cardio-myoc
151 into oxidized chromatin we have established 'isogenic' human diploid cells in which PARP1 and/or PARP
153 his study supports the clinical relevance of isogenic in vitro models of radioresistance and clarifie
158 with MYBPC3 PTC mutations by utilizing human isogenic induced pluripotent stem cell-derived cardiomyo
159 enesis of SNCA in these cells, generating an isogenic iPSC line with normalized SNCA gene dosage.
160 "scarless" gene-editing methods, we created isogenic iPSC lines that differ only in the length of th
161 301L mutation and generated P301L:Deltap35KI isogenic iPSC lines using CRISPR/Cas9 genome editing.
163 but the protein levels were comparable among isogenic iPSC-CMs, suggesting that haploinsufficiency of
166 found that differentiated cells derived from isogenic iPSCs and nt-ESCs showed comparable lineage gen
169 editing technologies to generate a panel of isogenic knockin human iPSC lines carrying APP and/or PS
173 Investigating single, double and triple isogenic knockout mutants of the PhiHKU.vir-encoded exot
177 odifications were examined in a pair of near isogenic lines (NILs) (with and without Lr28 in the back
180 Here, we developed and used a pair of near-isogenic lines (NILs) to characterize DNA methylome land
183 larvae and adults of Drosophila melanogaster isogenic lines derived from a natural population to extr
184 is gene introgressed in desi and kabuli near-isogenic lines enhances the seed weight, yield, producti
186 es were also tested for virulence to 20 near-isogenic lines that differ for leaf rust resistance gene
187 s9) homology directed repair (HDR) to create isogenic lines that varied for the F187Y substitution.
188 nd apoptosis-and performed RNA sequencing on isogenic lines to identify differentially expressed gene
189 ungal leaf microbiomes of the resulting near-isogenic lines were compared with the microbiome of the
193 on in individual patients, we differentiated isogenic MDS induced pluripotent stem cells harboring up
194 ific organoids from hiPSCs incorporated with isogenic microglia-like cells in order to enhance immune
195 r approach will facilitate tissue atlases of isogenic model organisms or from multiple biopsies or lo
197 rbation dataset on PI3K and MAPK pathways in isogenic models of a colon cancer cell line, it generate
199 ed to identify and characterize subgroups of isogenic mouse offspring exposed to identical MIA, which
200 s have been largely carried out using inbred isogenic mouse strains, in which there is no (or very li
201 ls as well as a complementary strategy using isogenic murine embryonic stem cells with monoallelic K7
202 th a wild-type B anthracis strain or with an isogenic mutant deficient for the protective antigen.
204 consumption specific to RTT patient-derived isogenic mutant NPCs was observed, though the pattern of
206 ingipain activity is higher in 33277, and an isogenic mutant strain deficient for the gingipains exhi
207 encoding 5 transporters confirmed that each isogenic mutant strain was significantly (P < 0.05) impa
209 e trait loci analysis, machine learning, and isogenic mutant strains identified and confirmed a one-n
218 on studies of L. monocytogenes wild type and isogenic mutants together with biochemical studies with
220 nd different S. pyogenes serotypes and their isogenic mutants, reveals how changing microenvironments
226 plication of CRISPR technologies to engineer isogenic neural cells to study the impact of common vari
227 sing a murine model of periodontitis and two isogenic non-capsulated mutants of P. gingivalis, this s
228 ith the encapsulated W50 wild-type strain or isogenic non-encapsulated DeltaPG0116-PG0120 (GPA) and D
229 N2-fixing symbionts progressively outcompete isogenic non-fixers within root nodules, where N2-fixati
230 e we demonstrate, with the use of motile and isogenic nonmotile deletion mutants of two independent s
231 ough primary DIPG tumor characterization and isogenic oncohistone expression, we show that the same H
235 e-wide loss-of-function genetic screen in an isogenic pair of human colorectal cancer cell lines harb
236 ofile double-strand break repair pathways in isogenic paired cell lines, we demonstrate that the HPV1
241 and a lower bacillithiol redox ratio vs. the isogenic parent, indicating a higher level of oxidative
242 of COMT was found in dopaminergic neurons of isogenic PARK2 induced pluripotent stem cell lines that
252 n addition, a fraction of individuals within isogenic populations raised in controlled environments h
255 G cell line to study ddC-induced toxicity in isogenic proliferating (undifferentiated) and nonprolife
256 e approach, we visualized DNA replication in isogenic PSCs generated by different reprogramming appro
260 pool decoding, we created a large library of isogenic reporter clones and identified reporter integra
262 solates with rocA polymorphisms (n = 48), an isogenic rocA deletion mutant strain, and five isogenic
263 ogenic rocA deletion mutant strain, and five isogenic rocA polymorphism mutant strains to perform gen
265 ique, treatment induced mutations in sets of isogenic samples with very low false positive rates.
269 n, we used Zinc finger nucleases to generate isogenic SHANK3 knockout human embryonic stem (ES) cell
270 usly inoculated mice were challenged with an isogenic SpA-deficient S. aureus mutant, cells prolifera
271 visualize the clinical isolate PMSS1 and an isogenic straight-rod mutant (Deltacsd6) within thick lo
273 ed a high fat/sugar water-induced animal (an isogenic strain of C57BL/6 J:129S1/SvImJ mice) model of
277 omatin organization and transcription, using isogenic strains lacking all combinations of these enzym
278 atory strains carrying pMB2 grew faster than isogenic strains lacking the plasmid in both rich and mi
279 uronal viral retrograde tract tracing, using isogenic strains of pseudorabies virus (PRV) with distin
280 comparison between CpMV1-free and -infected isogenic strains revealed no overt effects of the virus.
281 Fluorescent protein-based differentiation of isogenic strains revealed that priority of gut colonizat
283 unctions-within the population of individual isogenic strains, along single misshaped cells, and even
285 nd gene expression analysis between a nearly-isogenic Sw-7 line and its susceptible recurrent parent
287 ining native or recombined symbionts against isogenic symbiont-free hosts showed that the fitness ben
289 ion in RYR1 exon 36 (p.Gln1970fsX16) that is isogenic to that identified in one parent of a severely
290 nt B. anthracis Ames wild-type strain or the isogenic toxin-deficient mutants DeltaEF, DeltaLF, and D
291 was confirmed by competition experiments in isogenic TP53-WT and TP53-null (TP53(-/-)) cell lines.
292 0(4) colony-forming units of wild-type or an isogenic typhoid toxin deletion mutant (TN) of S. Typhi.
293 molecule screen based on competition between isogenic untransformed cells and BCR-Abl-transformed cel
294 y observed in culture, providing potentially isogenic virus-free lines enabling studies probing the b
296 nergetics and mitochondrial function between isogenic wild-type and mutant neural progenitor cell (NP
299 Q1970fsX16+A4329D RYR1 mutations, which are isogenic with those identified in a severely affected ch
300 by studying the dynamics of the response of isogenic yeast populations to a shift in carbon source,