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1 ce and reposition a conserved element of the ligand binding pocket.
2 o hydrophobic residues that form the peptide ligand binding pocket.
3 ct of a combination of a few residues in the ligand binding pocket.
4 used only at selected buried residues of the ligand binding pocket.
5 does not depend on the affinity state of the ligand binding pocket.
6 suggesting that this region may be part of a ligand binding pocket.
7 y different positioning and structure of the ligand binding pocket.
8 obic interactions or both to form a U-shaped ligand binding pocket.
9 his position that are accommodated by the PR ligand binding pocket.
10 it atop four amino acids that shield the CAR ligand binding pocket.
11 large dimerization interface and a small CAR ligand binding pocket.
12 ured that their interaction was not with the ligand binding pocket.
13 ght about by alterations of the shape of the ligand binding pocket.
14 pharmacophore binding site in the beta(2)AR ligand binding pocket.
15 oglobin, suggesting an unhindered and apolar ligand binding pocket.
16 accommodates one molecule of THC within its ligand binding pocket.
17 vated GPCRs and forms a critical part of the ligand binding pocket.
18 he binding conformation of Compound-1 in the ligand binding pocket.
19 the adhesins clustered around the predicted ligand-binding pocket.
20 of 23 ordered lipids intercalates inside the ligand-binding pocket.
21 ional coupling of this surface to the native ligand-binding pocket.
22 and which can be used to predict the likely ligand-binding pocket.
23 tion of the bound phosphate group within the ligand-binding pocket.
24 occupying different regions of the receptor ligand-binding pocket.
25 ent with PA-PhoQ binding metal in a specific ligand-binding pocket.
26 her monomer and with the DHT molecule in the ligand-binding pocket.
27 pulate the architecture of the extracellular ligand-binding pocket.
28 the sGC heme has a large hydrophobic distal ligand-binding pocket.
29 ies produced by protein residues forming the ligand-binding pocket.
30 ands induce in the immediate vicinity of the ligand-binding pocket.
31 litazone showed that binding occurred in the ligand-binding pocket.
32 ytic cysteine is no longer positioned in the ligand-binding pocket.
33 tes in both subunits, which may constitute a ligand-binding pocket.
34 h located on helix 11 that forms part of the ligand-binding pocket.
35 e different points of interaction within the ligand-binding pocket.
36 nd promote access of ghrelin to the receptor ligand-binding pocket.
37 gand and a conserved aromatic residue in the ligand-binding pocket.
38 s an active conformation and exhibits a deep ligand-binding pocket.
39 rounding amino acid residues in the receptor ligand-binding pocket.
40 and AIIB2, it appeared to lie closer to the ligand-binding pocket.
41 signaling from occupation of the orthosteric ligand-binding pocket.
42 analysis of the SBA compounds into the LPA2 ligand-binding pocket.
43 ants displayed disruptions in and around the ligand-binding pocket.
44 2D were mapped to a single loop in the NKG2D ligand-binding pocket.
45 ic ligands indicate distinct features of the ligand binding pockets.
46 fields, are inherently suitable to classify ligand-binding pockets.
47 erfaces is a major route to the formation of ligand-binding pockets.
48 cavities within protein structures, known as ligand-binding pockets.
49 sitions, and shows the crowded nature of the ligand-binding pockets.
50 s, discovering each to contain four putative ligand-binding pockets.
51 all distant from the interfaces and outside ligand-binding pockets.
52 is revealed 10 binding "hot spots", 4 in the ligand-binding pocket, 2 in the coactivator-binding regi
53 erved glutamine residue 159 in the predicted ligand-binding pocket abrogates the binding of the SabA
54 domains predicts that these cysteines form a ligand-binding pocket, allowing for the possibility of d
55 DHR38 reveals the absence of both a classic ligand binding pocket and coactivator binding site, feat
56 ent ERalpha antagonists bind in the receptor ligand binding pocket and compete for binding with estro
57 states, but the allosteric link between the ligand binding pocket and cytoplasmic surface remains po
59 ion experiments to map the BRPF1 bromodomain ligand binding pocket and identified key residues respon
60 im molecules are observed within the defined ligand binding pocket and likely underlie the high poten
61 llosteric network that traverses the protein ligand binding pocket and links these two elements to di
62 h 5' substituents should fit poorly into the ligand binding pocket and perhaps behave as antagonists.
63 ly E75 nuclear receptor contains heme in its ligand binding pocket and that the oxidation state of th
64 ssion of empty (nonhydrated) cavities in the ligand binding pocket and the center of the receptor, wh
65 ve antagonists bind directly to the integrin ligand binding pocket and thus disrupt the ligand-recept
66 required mutations were located outside the ligand binding pocket and yet exerted important action o
67 l mutations, four of them were not in the ER ligand binding pocket and yet exerted important action o
68 nce analysis revealed different features for ligand binding pockets and orthosteric and allosteric si
69 allosteric network that connects the buried ligand-binding pocket and a solvent-exposed coregulator
70 cluding a 53% reduction in the volume of the ligand-binding pocket and an increase in the surface are
71 urred through sequence variation both at the ligand-binding pocket and at loops near the dimerization
72 ture (Protein Data Bank ID code 4GRV) in the ligand-binding pocket and by the presence of the amphipa
74 ct to the wild-type protein, it had a larger ligand-binding pocket and displayed movement of a loop (
78 dies confirmed COH29 binding to the proposed ligand-binding pocket and offered evidence for assembly
79 unveil a compact PAS domain with a potential ligand-binding pocket and reinforce the view that the PA
80 his conformation, wherein W72 flips into the ligand-binding pocket and renders the protein incapable
81 vealed their unique orientations in the SHBG ligand-binding pocket and suggested opportunities for th
82 is strictly dependent on an intact receptor ligand-binding pocket and that FES binds to ERalpha with
83 and hydrogen-bonding network of water in the ligand-binding pocket and the contribution of protein re
84 ally, an extensive polar network between the ligand-binding pocket and the cytoplasmic domains appear
85 s A G-protein-coupled receptors with a large ligand-binding pocket and the first transmembrane helix
86 f distinct connecting mechanisms between the ligand-binding pocket and the G-protein-binding site in
87 h enough detail to enable detection of their ligand-binding pockets and suggest that cryo-EM could pl
88 major rearrangement of the C-loop within the ligand binding pocket, and perhaps other regions includi
89 major rearrangement of the C-loop within the ligand binding pocket, and the disruption of a salt brid
90 cavity adjacent to the previously identified ligand binding pocket, and the F107W mutation results in
91 s other than those in the headpiece near the ligand-binding pocket, and the alpha- and beta-subunits
96 of protein-ligand interaction sites, namely ligand-binding pockets, around protein-protein interface
98 g similarities between PILRalpha and SIGLEC1 ligand binding pockets as well as at least one set of di
100 VIP1R with its N-terminus inserting into the ligand binding pocket at the transmembrane bundle of the
101 ydrolyzing enzymes typically harbor a buried ligand-binding pocket at interdomain or intersubunit cle
102 engagement by quercetin of an unanticipated ligand-binding pocket at the dimer interface of IRE1's k
103 the extended conformation, the high affinity ligand binding pocket between domains I and III is disru
104 al solvent molecules exist within the A-site ligand binding pocket; both mediate water-bridged intera
105 rearrangements not only at the bottom of the ligand-binding pocket but also in a key polar network in
107 Y188(5.44) (TMV) was observed away from the ligand-binding pocket, but still necessary for hIP activ
108 nergic receptors that share almost identical ligand-binding pockets, but show notable amino acid sequ
109 strate the relative ease with which the PYR1 ligand-binding pocket can be altered to accommodate new
110 nity, and selectivity, and suggests that the ligand-binding pocket can be thought of as having three
111 e data establish a paradigm in which the USP ligand-binding pocket can productively bind ligand with
112 eptors indicates that the contraction of the ligand-binding pocket caused by the inward motion of hel
114 a wild type neuronal nAChR ECD and the full ligand binding pocket conferred by two adjacent alpha su
115 r study suggests the existence of an optimal ligand-binding pocket conformation for capsaicin-mediate
116 dentical interactions of T and DHT in the AR ligand binding pocket correlate with similar rates of di
120 ve conformation and occupies the orthosteric ligand-binding pocket enabled by a conformational change
121 gle conservative residue substitution in the ligand-binding pocket, ERalpha Met(421) --> ERbeta Ile(3
122 rd helix, P4, projects orthogonally from the ligand-binding pocket, exposing its stem-loop to base pa
126 tedly, two Diprovocim molecules bound to the ligand binding pocket formed between two TLR2 ectodomain
128 y ribosomal proteins, similar small molecule ligand binding pocket geometries, and many constellation
129 hat a methionine and a lysine residue in the ligand binding pocket (GluN2D-Met763/Lys766, GluN2C-Met7
131 specific segment(s) that define the receptor ligand-binding pocket have produced less than definitive
132 ncluded those located in the vicinity of the ligand-binding pocket (helices H3, H5, and strands S1, S
134 lmS ribozyme with a mutation distal from the ligand-binding pocket highlights a nucleotide critical t
135 receptor activation within the region of the ligand-binding pocket, identifying transmembrane residue
138 ubtle backbone conformational changes in the ligand-binding pocket in determining the magnitude of ag
139 r, molecular interactions that stabilize the ligand-binding pocket in its permissive conformation, an
141 ly different binding poses but stabilize the ligand-binding pocket in nearly identical permissive con
144 the potential produced by the protein in the ligand-binding pocket in the closed state is complementa
145 d visualization via cocrystallography of two ligand-binding pockets in human SOD1 and its pathogenic
146 onist-bound beta(1)AR around the orthosteric ligand binding pocket indicate that the fully active rec
147 results suggest that Hsp90 stabilizes the GR ligand-binding pocket indirectly by utilizing the allost
148 scontinuous and that the presentation of the ligand binding pocket is dependent on alpha helices with
149 d receptor coactivator 1 reveals that the GR ligand binding pocket is expanded to a size of 1,070 A(3
151 ular dynamics simulations illustrate how the ligand-binding pocket is conformationally linked to this
153 or extending the hybrid domain, and that the ligand-binding pocket is not occluded by the membrane in
154 association of the antagonist with the core ligand-binding pocket is sufficient to induce an antagon
157 in monoclonal antibodies (mAbs) lie near the ligand-binding pocket, it follows that the epitopes of t
159 LBD) reveals that luteolin occupies a buried ligand-binding pocket (LBP) but binds an inactive PPARga
160 terone (DHT) and testosterone (tes), for the ligand-binding pocket (LBP) in the ligand-binding domain
161 e parasite ACBP is shown to have a different ligand-binding pocket, leading to an acyl-CoA binding sp
162 s indicate, as for MTH313, the presence of a ligand binding pocket located between the dimerization a
163 six-bladed beta-propeller fold with a single ligand binding pocket located in the central part of the
165 ligands and specific regions of the receptor ligand-binding pocket might selectively trigger a subset
167 ng protein family that possesses a conserved ligand-binding pocket, negatively regulates the mammalia
168 cl2 structures reveals extensions of a known ligand-binding pocket not apparent in the apo crystal st
170 e molecular volume in the region of the hVDR ligand binding pocket occupied by the ligand side-chain
171 laces a SNAPFL-labeled antiestrogen from the ligand binding pocket of a terbium-labeled estrogen rece
172 ontaining the beta-propeller domain from the ligand binding pocket of alpha4 exhibited the same signa
173 se results provided the first details of the ligand binding pocket of an eicosanoid-binding chemoattr
176 Both Wy-14,643 and ciprofibrate occupied the ligand binding pocket of CAR and adapted a binding mode
181 tion of numerous structural hot spots in the ligand binding pocket of Epa proteins is a main driver o
183 hat the amino acid tryptophan-299 within the ligand binding pocket of hPXR plays a key role in the ag
184 rect and variable agonistic link between the ligand binding pocket of integrins and the cell interior
186 the mutation of specific residues within the ligand binding pocket of PXR tunes the receptor's respon
188 -II class only requires local changes to the ligand binding pocket of the guanine/adenine class to ac
191 l validation of a computational model of the ligand binding pocket of the S1P1 GPCR surrounding the a
194 was crystallized without added ligands, the ligand binding pockets of both closed and open forms con
197 for these observations are variations in the ligand binding pockets of the three PPAR subtypes that a
198 f atoms in a ligand or for each residue in a ligand-binding pocket of a macromolecule could be calcul
199 g-term storage and relies on the hydrophobic ligand-binding pocket of AHR, with identical structural
200 om resolutions, offering a first view of the ligand-binding pocket of CD0873 and provide evidence tha
202 uggesting that they target the high affinity ligand-binding pocket of EphA4 and inhibit ephrin-A5 bin
204 er exhibits specific binding activity at the ligand-binding pocket of expressed GABAC receptors, desp
206 0 to unliganded GR stabilizes the unliganded ligand-binding pocket of GR indirectly by promoting an i
207 nnels, we mutated several amino acids in the ligand-binding pocket of MloK1, known from electrophysio
208 atic residues, found in the acetylcholine or ligand-binding pocket of nAChRs, are conserved in all su
209 ing a critical tyrosine residue found in the ligand-binding pocket of other haem-binding NEAT domains
210 a indicated that the interaction between the ligand-binding pocket of PDZ1 and an internal ligand on
211 esidues and six nonpolar residues within the ligand-binding pocket of PPAR-gamma that are reported to
212 ave termed "U" and "S", interacting with the ligand-binding pocket of PPARgamma primarily via hydroph
214 s identified several key residues within the ligand-binding pocket of PXR that constitute points of i
216 acing individual or multiple residues in the ligand-binding pocket of S1P(2) with S1P(1) sequence did
218 the contributions of four amino acids in the ligand-binding pocket of the enzyme that differ between
219 as to anaerobiosis and that residues in the ligand-binding pocket of the protein influence its abili
220 o receptor function because they connect the ligand-binding pocket of the receptor to the nucleotide-
224 with an architecture similar to those of the ligand-binding pockets of coronavirus hemagglutinin este
227 computational protein design techniques, the ligand-binding pockets of two periplasmic binding protei
228 ion cocrystal structures delineated a unique ligand-binding pocket on the Ras protein that is adjacen
230 the crystal structure shows that within the ligand-binding pocket only one adenine is highly specifi
231 nd to our structure identifies an additional ligand-binding pocket outside of the active site cleft.
232 late ligand binding directly by changing the ligand-binding pocket per se and/or indirectly by induci
235 dies have implicated four amino acids in the ligand-binding pocket (positions 32, 47, 76, and 82).
236 The current structure also suggests that the ligand-binding pocket previously observed in the Cabin1-
239 over, mutation of His-251 in the human A(1)R ligand binding pocket reduced AMP potency without affect
240 d five independent mutations in the putative ligand-binding pocket region that allow AphB to constitu
241 F adopts a unique orientation within the AHR ligand binding pocket relative to alphaNF and may facili
242 orin induces conformational changes in PXR's ligand binding pocket relative to structures of human PX
243 at D3.49/D6.30, further 2-AG entry into the ligand binding pocket results in both a W6.48 toggle swi
244 tails of the extensive charge network in the ligand binding pocket reveal additional interactions not
246 , which increase the free volume of the hVDR ligand binding pocket, significantly enhance MK antagoni
247 regulators: the structures show an extensive ligand-binding pocket spanning both monomers in the func
249 c amino acid residues in the entrance of the ligand-binding pocket than those with alpha-configuratio
250 selectivity of a coactivator and a distinct ligand binding pocket that explains its selectivity for
251 ing a single nucleotide swap distal from the ligand binding pocket that we find to predictably contro
252 onstructed a large comprehensive database of ligand binding pockets that will be searched against by
254 ophobic residues on TM3 and TM7 form a broad ligand-binding pocket that can accommodate the diverse s
255 We identified key residues within hPXR's ligand-binding pocket that constitute points of interact
256 structure reveals important features of the ligand-binding pocket that contribute to the high affini
257 fied a single residue located outside of the ligand-binding pocket that controls mometasone furoate a
259 ly localized to the P1 helix adjacent to the ligand-binding pocket that likely presents a local kinet
260 differentially stabilized regions within the ligand-binding pocket that may contribute to the differe
261 resulted in identification of an alternative ligand-binding pocket that partially overlaps the genomi
262 ly conservative residue substitutions in the ligand binding pocket, the most selective compounds have
263 dentifies the disulfide bond and the retinal ligand binding pocket to be the most rigid region in rho
265 tion to ensuring the accessibility of the GR ligand-binding pocket to ligands, Hsp90 seems to enable
266 suggesting a conformational pathway from the ligand-binding pocket to regions that interact with G pr
267 different set of key residues connecting the ligand-binding pocket to the G(s)-coupling site, and a s
268 coherent signaling pathway from the receptor ligand-binding pocket to the G-protein activation region
269 nts of the alpha1 and alpha1' helices at the ligand binding pocket toward the high affinity state, wi
271 gand at 2 K dynamically reorients within the ligand-binding pocket, tunneling among the energy minima
272 or subtypes that utilize the same allosteric ligand-binding pocket, using wild-type receptors and chi
273 al opportunity to tune interactions with the ligand binding pocket via changes in hydrogen bond donor
274 tracellular loop (ECL) 2, which composes the ligand-binding pocket, was substantially different from
275 Arising from an in silico screen of the MR1 ligand-binding pocket, we identify one ligand, 3-([2,6-d
279 cally changed the residues in the allosteric ligand-binding pocket were studied in the presence of Y1
280 n energetically preferring a pose in the VDR ligand binding pocket where its terminal C26-methylene a
281 und in ZM241385, which extends deep into the ligand-binding pocket where it makes polar interactions
282 helix 12 is folded over the entrance to the ligand-binding pocket where it serves as a lid, and it h
283 otential on the face containing entry to the ligand binding pocket, whereas LJM111 is negative to neu
284 A binds carbonic acid at the entrance to the ligand-binding pocket, whereas bicarbonate binds in near
286 lso pushes the heme toward the substrate and ligand binding pocket, which relocates the substrate to
287 confirmed 18 residues lining the hydrophobic ligand binding pocket, which, combined with the previous
288 e structural features within the diverse Epa ligand binding pockets, which affect affinity and specif
289 formation is enabled by a deeply penetrating ligand-binding pocket, which in turn results from a nonc
290 ailable structures of apoNPC2, the incipient ligand-binding pocket, which ranges from a loosely packe
291 nidinium group of Arg(226) at one end of the ligand binding pocket, while the aliphatic chain fills a
292 amino acid predicted to be in the ERR alpha ligand-binding pocket with the corresponding ERR gamma r
293 LBD) is a helical sandwich fold that nests a ligand binding pocket within the bottom half of the doma
295 Most research has focused on identifying the ligand binding pocket within the helical bundle, whereas
297 y altering the region bounded by AF2 and the ligand binding pocket without affecting equilibrium andr
299 to fine tune allostery on changes to the CAP ligand-binding pocket without a drive to a noncooperativ
300 ming primarily hydrophobic contacts with the ligand-binding pocket without direct hydrogen-bonding in