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1 group rather than outgroup or ambivalent (no logo).
2 asure and depicted graphically by a sequence logo.
3 e binding site, as represented by a sequence logo.
4  the Singular Values of a specific encrypted logo.
5 led preference for art displayed next to the logo.
6 ion web application for creating and sharing logos.
7 mary plots such as motif enrichment sequence logos.
8 PI for creating publication-quality sequence logos.
9 atterns are usefully represented by sequence logos.
10 ition weight matrices and graphical sequence logos.
11 ce an approach built upon the concept of HMM logos.
12                       The widely used tools, Logos, Al2co, Confind, and the entropy-based method, oft
13 ings placed next to the sponsoring corporate logo, an effect that correlates with modulation of the v
14                   Current web-based sequence logo analyses for studying domain-peptide interactions a
15 or men and scarves for women bearing the ABO logo and colors.
16 both a bitmap representation of our school's logo and the title of this study on the DNA tapes.
17 f these databases with LAMA, and for viewing logos and bootstrap trees.
18 izable, interactive, vector-graphic sequence logos and embedding them in web applications.
19 d quantitative colour schemes, annotation of logos and integration with other plots.
20                                     Sequence Logos and its variants are the most commonly used method
21 However, MSA visualizations such as sequence logos and matrix representations have changed little sin
22 lour-coding alignment positions, by sequence logos and optionally by colour-coding the residues of a
23 formation theory was used to create sequence logos and promoter models for eight phages of the T7 gro
24 ting the convolutional filters into sequence logos and quantitatively compare the sequence logos betw
25  visualize convolutional kernels as sequence logos and successfully identify similar motifs in the JA
26                               Here, sequence logos and weight matrices were built to model SyCrp1 bin
27  a complete overhaul with a new website, new logo, and new functionalities.
28 Analyses of amino acid frequencies, sequence logos, and agreement with existing NES consensus sequenc
29 ifically bound by proteins by using sequence logos, and we can measure the corresponding binding ener
30                                              Logos are commonly used in molecular biology to provide
31                        Skylign's interactive logos are easily incorporated into a web page with just
32                                              Logos are rendered as native matplotlib objects that are
33                                     Sequence logos are visually compelling ways of illustrating the b
34 roducts fulfilling the criteria of the Dutch logo as part of their diets.
35             The criteria can be used for the logo assignment on food products, in order to stimulate
36 sentations of these amino acid preferences ('logos') based on position-specific amino-acid probabilit
37 ogos and quantitatively compare the sequence logos between human and mouse datasets.
38 mation diagram that is similar to a sequence logo but with alignment data mapped on to secondary stru
39 be computed by dividing the information in a logo by the free energy of binding after it has been con
40 o increased precuneus response to both juice logos compared with a tasteless control (r = 0.45), sugg
41  gives natural results, we compared sequence logos composed from naturally occurring leucine-responsi
42                                         Each logo consists of stacks of letters, one stack for each p
43 fferent DNA sequences, tools that can create logos directly from binding affinity data are useful to
44 but none of them generates weighted sequence logos directly from energy measurements or other sources
45 ased ventromedial prefrontal response during logo-elicited anticipation (r = -0.44).
46                            These interactive logos enable scrolling, zooming, and inspection of under
47 en list of CpGs and generating the DNA motif logo enriched in the genomic contexts of a given list of
48 n list of CpGs, and generating the DNA motif logo enriched in the genomic contexts of a given list of
49                                   Two Sample Logo extends WebLogo, a widely-used sequence logo genera
50       LogoJS supports all the aforementioned logo extensions and is bundled with a companion web appl
51 this purpose capable of reading barcodes and logos fabricated on various substrates using soft-lithog
52 essfully used as a smart anti-counterfeiting logo for a medicine bottle and for information recording
53 ent coatings and a smart anti-counterfeiting logo for a medicine bottle.
54                                 The sequence logo for DNA binding sites of the bacteriophage P1 repli
55                                 The sequence logo for Fis binding sites showed the significance and l
56 ch provides a unified framework for creating logos for both sequence alignments and profile hidden Ma
57 formation encryption and anti-counterfeiting logos for medicine bottles.
58 e for our software, C2H2-enoLOGOS, generates logos for the DNA-binding preferences of the C2H2 zinc-f
59 rmation (as sequences, matrices and sequence logos) for individual TFs, groups of TFs or for all TFs
60                  enoLOGOS generates sequence logos from a variety of input data, including energy mea
61  produce both standard and highly customized logos from either a matrix-like array of numbers or a mu
62  is a web-based tool that generates sequence logos from various input sources.
63 nes with intragenic FBs than in the sequence logos generated from FURTA-positive promoter regions.
64                         Analyses of sequence logos generated from significantly decreased phosphoryla
65                     However, the methods for logo generation in common use lack a proper statistical
66 ation of threshold varying tool and sequence logo generator written in the R statistical programming
67 Logo extends WebLogo, a widely-used sequence logo generator.
68  convenient and highly configurable sequence logo generator.
69  sites, kinase-substrate data sets, sequence logo generators, a Cytoscape plugin and BioPAX download
70                   WebLogo generates sequence logos, graphical representations of the patterns within
71                                 The sequence logo has been widely used to represent DNA or RNA motifs
72                                     Sequence logos have become a crucial visualization method for stu
73                                     Sequence logos have become a popular way to graphically represent
74 and computational techniques have developed, logos have been extended: extra symbols represent covale
75 volutionary conservation scores and sequence logos, identification of targets in conservation biology
76 the available web servers are able to create logo images from a set of aligned sequences, but none of
77 lication-ready DNA, RNA and protein sequence logos in a highly customizable fashion with features inc
78 or A. thaliana can be visualized as sequence logos in the UCSC Genome Browser.
79 uence motifs, and why should we use sequence logos instead of consensus sequences to represent them?
80 ty control statistics, incorporates sequence logos into motif enrichment displays and includes more e
81                                   Two Sample Logo is a web-based tool that detects and displays stati
82  and intuitiveness, the traditional sequence logo is unable to display the intra-motif dependencies a
83 ncludes methods for creation of pairwise HMM logos locally.
84 to estimate such motif properties as length, logo, number of instances and their locations solely on
85 cipants smelled a sweaty t-shirt bearing the logo of another university, with either their student id
86 ip of the experiment by a company endows the logo of the company with the capacity to bias revealed p
87 e experiment similarly endowed the gesturing logo of the company with the capacity to bias revealed p
88 eases in behavioral disinhibition toward the logo of the consumed beverage (r = 0.54; P = 0.02).
89 d a sweaty target t-shirt bearing either the logo of their own university, another university, or no
90 his method is demonstrated with barcodes and logos of compounds, approved by the Food and Drug Admini
91 s involved in Fur binding in the FB sequence logos of FURTA-positive clones with intragenic FBs than
92                              The overarching logos of mammalian memory B cells (MBCs) is to cache the
93 servation signature also appears in sequence logos of sites for other replication origin binding prot
94                                      Two HMM logos, one for each profile, are drawn one upon the othe
95    Though useful for many purposes, sequence logos only show the average sequence conservation, and i
96 ed as the screen appearance of a brand name, logo, or identifiable trademark on products or product p
97 r, specific signals (e.g., language, labels, logos, or packaging) American consumers use to identify
98 ion of amino acid characters in the sequence logo panel.
99        This study supports including a study-logo pen or pencil in a second questionnaire mailing to
100 ors conducted two US trials in which a study-logo pen or pencil was randomly included in a second que
101 e files, Skylign creates a novel interactive logo plot for inclusion in web pages.
102 put in the form of both tables and composite logo plots for visualizing SNP-motif interactions.
103 izable fashion with features including multi-logo plots, qualitative and quantitative colour schemes,
104 atistical significance testing and composite logo plots, which are graphical representations of motif
105             We redefine the information at a logo position as a per-observation multiple alignment lo
106 (e.g., color) and semantic (e.g., meaning of logo printed in T-shirt) components.
107                                     Sequence logos provide a richer and more precise description of s
108 ed motif information, including the sequence logo, PWM, consensus sequence and specific matching site
109 e figures to users, but support for sequence logos remains limited.
110 n weight matrix (PWM) and graphical sequence logo representations of the k-mer data.
111 n weight matrix (PWM) and graphical sequence logo representations of the k-mer data.
112             MethylSeqLogo preserves sequence logo semantics-the relative height of nucleotides within
113                                          The logos show that unmethylated CpG binding sites are a fea
114  can be intuitively visualized with sequence-logo-style plots created using an extension to weblogo.
115           Here we present a new program, PTM-Logo, that generates representations of these amino acid
116  allowed us to show graphically, by sequence logos, that the spacing between the SD and the initiatio
117 layed art or the proximity of the sponsoring logo to the piece of art.
118                               Using sequence logos to investigate TCR contact sites on HLA molecules,
119 ality ranging from dyad search and consensus logos to motif discovery and pair-wise alignment.
120 fs, we developed kpLogo, a probability-based logo tool for integrated detection and visualization of
121                    The University of Seville logo was printed by employing those inks, and the presen
122                                     Sequence logos were introduced nearly 30 years ago as a human-rea
123                                 The sequence logos were significantly different, indicating that the
124 oped MethylSeqLogo, an extension of sequence logos which includes new elements to indicate DNA methyl
125                      We also introduce a PWM logo, which visually displays the implications of observ
126 esent covalent modifications to nucleotides, logos with multiple letters at each position illustrate
127 ir own university, another university, or no logo, with either their student identity or their specif
128 tly difficult to generate and customize such logos within the Python programming environment.

 
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