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1 onstrate that elevating levels of intestinal lumenal 5-HT by oral supplementation or genetic deficien
7 macaques by 16S sequencing feces and paired lumenal and mucosal samples from ten sites distal to the
8 -length A34 or a construct consisting of the lumenal and transmembrane domains restored normal traffi
11 septate junction formation, deposition of a lumenal/apical extracellular matrix, and lumenal secreti
12 is also frequently assayed by the mixing of lumenal aqueous compartments, using probes of low molecu
13 (LPS), (2) cluster on the surface of native lumenal bacteria, (3) prevent the adherence of enteropat
20 luor to the endolysosomal pathway, we mapped lumenal Ca(2+) changes during endosomal maturation and f
21 It is extremely challenging to quantitate lumenal Ca(2+) in acidic Ca(2+) stores of the cell becau
23 However, recent experiments suggest that SR lumenal Ca(2+) may also participate in regulating RyR ga
26 to the identification of key residues on the lumenal capsid surface that are important for AAP-VP and
27 expand (or reseal), slowing the dispersal of lumenal cargo proteins and granule membrane proteins.
32 served membrane-intrinsic helix hairpin, the lumenal channel protonates an acidic glutamate in the c-
33 on, a ratcheting mechanism is used by the ER-lumenal chaperone BiP in eukaryotes, and a pushing mecha
34 lly we show that a conserved cysteine in the lumenal chaperone BiP is susceptible to oxidation by per
36 78/BiP, a typical endoplasmic reticulum (ER) lumenal chaperone, can be expressed on the cell surface,
37 ion has been described, massive reduction of lumenal chloride is observed that is 10(3) fold greater
44 remained inaccessible to both cytosolic and lumenal compartments until translation was terminated.
45 ssment of lipid mixing, the mixing of intact lumenal compartments, any lysis that occurs, and the mem
47 permeability may facilitate the movement of lumenal contents across the mucosa, thus helping to expl
48 y granule membrane with the plasma membrane, lumenal contents are rapidly discharged and dispersed in
50 T cell receptor (TCR) as a model to analyze lumenal determinants of ER quality control with a partic
56 that similar to yeast, human IRE1alpha's ER-lumenal domain (hIRE1alpha LD) binds peptides with a cha
60 cific physical interaction between the Heh1p lumenal domain and the massive cadherin-like lumenal dom
62 ted mutant of bZIP28 eliminating most of the lumenal domain does not bind BiP and is not retained in
65 we report that oligomeric assembly of the ER-lumenal domain is sufficient to drive Ire1 clustering.
66 r, lamina associated polypeptide 1 (LAP1) or lumenal domain like LAP1 (LULL1), to form an ATPase; the
68 he companion to this paper, we show that the lumenal domain of A33 is sufficient for interaction with
71 panel of charge-to-alanine mutations in the lumenal domain of A33 to map the B5 interaction site.
74 d system and chemical cross-linking that the lumenal domain of IRAP can interact with the lumenal loo
76 chromatography, we show here that the second lumenal domain of NPC1 binds directly to NPC2 protein.
80 ity by direct binding to cysteine 148 in the lumenal domain of the sensor, which is oxidized when IRE
81 mic reticulum membrane, comprising a sensory lumenal domain, and tandem kinase and endoribonuclease (
82 ytosolic Hsc70-binding J domain, but not the lumenal domain, is essential for its targeting to the fo
83 or Sel1L directly through Sel1L's N-terminal lumenal domain, thereby linking ERdj5 to the Hrd1 comple
89 that the two proteins interact through their lumenal domains and that the coiled-coil domain of B5 is
90 ne insertion of TMDs, explain why only short lumenal domains are translocated by EMC, and constrain m
92 n together, our results demonstrate that the lumenal domains of A33 and B5 interact and that the inte
94 t of GSVs, and we show it interacts with the lumenal domains of GLUT4 and other GSV constituents.
95 roteins, and membrane proteins with adhesive lumenal domains that may have contributed to the evoluti
97 of 13 transmembrane helices (TMs) and three lumenal domains, exports low-density-lipoprotein (LDL)-d
101 g that Val49 fits into a constriction at the lumenal end of the M2 helix of SERCA, possibly controlli
102 lar sinus endothelium as opposed to the vein lumenal endothelium, and the opposite pattern with VWF (
104 uberant immune system and a highly antigenic lumenal environment, the intestinal epithelium must rema
105 ntify other proteins including the monotopic lumenal enzyme cyclooxygenase 1 (prostaglandin H synthas
106 obasally polarized cysts, reminiscent of the lumenal epiblast stage, providing a model to explore key
107 of apico-basal polarity is critical for the lumenal epiblast-like morphogenesis of human pluripotent
110 reductase by determining susceptibility of a lumenal epitope in the enzyme to in vitro protease diges
114 ontrol of membrane proteins and connects the lumenal ER chaperone machinery to membrane protein bioge
115 merous misfolded proteins including soluble, lumenal ERAD-L and membrane-anchored ERAD-M substrates.
116 R)-associated degradation (ERAD) of numerous lumenal (ERAD-L) and membrane-anchored (ERAD-M) substrat
118 toxin treatment of HIEs caused physiological lumenal expansion detected by time-lapse microscopy, rec
120 roducing single disulfide bonds to constrain lumenal/extracellular domains or shortening a cytoplasmi
122 ed in the context of recruitment of the PSII lumenal extrinsic proteins and Mn4CaO5 cluster assembly.
123 has been proposed that the Psb27 protein, a lumenal extrinsic subunit, serves as a PSII assembly fac
129 f the jacket and permeates in, rendering the lumenal flow strongly acidic (pH </= 2) that suppresses
130 led reversed net water secretion and reduced lumenal flux of different molecular probes (bovine serum
131 al differential equations for myoplasmic and lumenal free Ca(2+) and Ca(2+)-binding molecules in the
132 the stromal gap, steric repulsion across the lumenal gap, and regulation of protein density by exchan
133 terminal domain, the intramembrane hole, the lumenal gate, the lumen of LptD channel, and the extrace
134 -pHluorin (SpH), a synaptic vesicle-targeted lumenal GFP (green fluorescent protein), whose fluoresce
135 kar2 mutant was defective for transfer of NE lumenal GFP, but not diffusion within the lumen, suggest
137 (Gal9) or loss of its capacity to recognize lumenal glycans exposed during lysosomal membrane damage
141 ression of an ER-adapted catalase to degrade lumenal H2O2 attenuated PRDX4-mediated disulfide bond fo
143 unit a and the proteolipid ring, whereas the lumenal hemichannel is located within subunit a at the i
144 tent with this hypothesis, yeast lacking the lumenal Hsp40s, Jem1 and Scj1, exhibited defects in ENaC
147 uestion, we introduced mutations into the ER-lumenal Hsp70, BiP/Kar2p, and found that an R217A substi
148 with physiological concentrations of the ER lumenal Hsp70-type chaperone BiP encourages disassembly.
149 C5(-/-) mice displayed significantly reduced lumenal inflammatory infiltration and cytokine productio
152 menal bovine serum albumin (BSA) lowered the lumenal ionic strength at which ProP became active.
154 d proteins, several thylakoid proteases, and lumenal isomerases did not change, while PsbS increased
156 nd nuclei, more persistent basal and ectopic lumenal KRT14(+) cells, and signs of metaplasia (attenua
159 ological reporters in bacteria, we deduced a lumenal location for the redox active domains of the pro
161 inear sequences of the endoplasmic reticulum-lumenal loop (Ser52-Phe55) and the first (Leu22-Lys30) a
162 P activity involves binding of BiP to the ER lumenal loop 7 of Sec61alpha in the vicinity of tyrosine
163 assembly into the STT3A complex, whereas the lumenal loop and the N-terminal cytoplasmic segment are
165 CP43, possibly in the vicinity of the large lumenal loop connecting transmembrane helices 5 and 6 of
166 the psaD-->C-->A-->B organization contains a lumenal loop conserved in PsaA proteins from Synechococc
173 ed that ProP is an ionic strength sensor and lumenal macromolecules activate ProP by altering ion act
174 , and overexpression of ERdj3 and ERdj4, two lumenal mammalian Hsp40s, increased the proteasome-media
175 and, in contrast to them, do not contain ER-lumenal markers possessing a C-terminal HDEL sequence.
176 sis produces similar results for most of the lumenal markers, the transmembrane marker phogrin-FP sho
177 or the dynamic organization of the transient lumenal matrix and normal structure of the cuticle that
179 -1 adaptor in apical polarity during de novo lumenal membrane biogenesis in the C. elegans intestine.
181 on transfer protein plastocyanin (Pc) to the lumenal membrane surface of the cytb6f complex using a P
183 fts and is selectively incorporated into the lumenal membranes of the endosomes to escape the endosom
184 alterations in gut microbial abundances and lumenal metabolite concentrations, but the effects of sp
186 onstrates that increased recombination among lumenal microbial populations is a phenotype associated
188 e.g., Helicobacter and Treponema), while the lumenal microbiota showed inter-individual variation and
189 s these populations a higher potential, than lumenal microbiota, in exerting effects on the host.
192 leak channel in HeLa cells and identified ER lumenal molecular chaperone immunoglobulin heavy-chain-b
193 pyrophosphate (Dol-P-P) is discharged in the lumenal monolayer of the endoplasmic reticulum (ER).
194 ylatable peptide, to generate Dol-P-P in the lumenal monolayer produced corresponding increases in th
195 traverse the membrane, defining torsinA as a lumenal monotopic membrane protein and requiring a new p
198 cargo proteins and lead to the formation of lumenal MVB vesicles that are predominantly small compar
201 plex plexiform-like lesions characterized by lumenal obliteration, intimal disruption, medial hypertr
203 acetylcholine to the airway constrictive and lumenal obstructive response after inhalation injury and
204 nascent chain exposure between cytosolic and lumenal occur without compromising the permeability barr
206 sfer of a subset of membrane lipids from the lumenal or exofacial leaflet to the cytofacial aspect of
212 Many lysosome functions are determined by a lumenal pH of ~5.0, including the activity of resident a
213 0 kea3 mutants, as these plants have a lower lumenal pH than cgl160 mutants, and thus show substantia
214 nus subdomain, which acts as a sensor of the lumenal pH, able to tune the quenching level of the comp
218 overed multiple mutations clustered near the lumenal plug of Sec61alpha, thus revealing cotransin's l
220 wed that both a 20-amino acid stretch of the lumenal portion and a 10-amino acid stretch of the cytop
222 ted from the loss of a high concentration of lumenal potassium, which enabled the influx of potassium
225 We find that there is a twofold increase in lumenal pressure during blastocyst development, which tr
227 aired each cancer sample with matched benign lumenal prostate epithelial cells and profiled transcrip
228 ere we report that the chloroplast thylakoid lumenal protein MAINTENANCE OF PHOTOSYSTEM II UNDER HIGH
229 by examining the localization of non-mature lumenal proteins in the Arabidopsis plsp1-null mutant an
230 he observation of marked alterations in many lumenal proteins in the cs26 mutant compared with the wi
232 plastids suggest that complete maturation of lumenal proteins is a critical step for proper thylakoid
234 e not significantly altered by replacing all lumenal proteins with only protein disulfide isomerase o
238 upling stoichiometrically to glutamate flux, lumenal protons and chloride allosterically activate ves
239 rize a chloride conductance that is gated by lumenal protons and chloride and supports glutamate upta
240 re was a significant amount of the extrinsic lumenal PsbO protein in the His27PSII, but not in the Hi
241 n-like domain of LTO1 interacts with PsbO, a lumenal PSII subunit known to be disulfide bonded, and a
242 s support a model in which MKS3 links the ER lumenal quality control machinery with the cytosolic deg
243 m homeostasis and suggest that modifying the lumenal redox environment may affect the progression of
245 bunits (Emc1-6, Emc7 and Emc10), has a large lumenal region and a smaller cytosolic region, and has a
247 resent evidence for a potential role of this lumenal region of ATP7A in copper transfer to cuproenzym
248 weaning piglets modulates the composition of lumenal-residing gut microbiota and reduces weaning-rela
249 for the expression of epithelial CRBPII and lumenal retinoids to imprint local gut DCs with an intes
250 a barrier-independent function that promotes lumenal secretion of Vermiform and Serpentine, extracell
251 f a lumenal/apical extracellular matrix, and lumenal secretion of Vermiform and Serpentine, two putat
252 IC-3 mutants lacking the signal peptide, the lumenal segment or the coiled-coil domain, but not in mu
253 mammalian cells and discovered that (1) two lumenal sensors of misfolded ER proteins, the kinase/nuc
257 by binding to the extrinsic proteins on the lumenal side of PSII, which differ significantly between
260 en-evolving complex, which is located on the lumenal side of the PSII reaction center and which conta
261 oplasmic side of the ER and completed on the lumenal side, requiring flipping of the intermediate Man
265 Ca(2+) was also undetectable in anterior lumenal silk using the histochemical Ca(2+) indicator, a
267 t to exploitation of a hitherto unrecognized lumenal source of H2O2 by PRDX4 and a parallel slow H2O2
268 isplays microvilli and a primary cilium; its lumenal space is rich in Ca(2+) Time-lapse imaging of is
269 the decreased proton motive force within the lumenal space partially explain the variations observed
272 ing mapped to a seven-residue stretch in its lumenal stem domain next to the transmembrane domain.
274 nsable for its ability to respond to Mn, its lumenal stem domain was required and it had to be target
275 ealed an extensive network of human-specific lumenal structures containing erythrocytes, indicating f
276 maturation in melanocytes, requires a third lumenal subdomain and proteolytic processing that itself
277 letion analyses indicate that two N-terminal lumenal subdomains are necessary and sufficient for ILV
281 (alphabetaTCR), we show that unassembled ER-lumenal subunits are rapidly degraded, whereas specific
283 e mammalian cilium protrudes from the apical/lumenal surface of polarized cells and acts as a sensor
285 ary epithelial cells (mMECs) progressed from lumenal to basal-like phenotypes based on expression of
287 g the differential and faster dissolution of lumenal versus tissue-embedded coating owing to a dispar
289 plays a unique role in the regulation of MVB lumenal vesicle size, whereas Vtal and Vps60 promote eff
290 hich target ubiquitylated receptors to intra-lumenal vesicles (ILVs) of multivesicular bodies, are th
292 s integral membrane proteins sorted into the lumenal vesicles of late-endosomal multivesicular bodies
293 and targeted for degradation are sorted into lumenal vesicles of multivesicular bodies (MVBs) by the
296 ting of ubiquitinated membrane proteins into lumenal vesicles of multivesicular bodies is mediated by
300 dictates an interaction between AAPN and the lumenal VP surface to nucleate capsid assembly.IMPORTANC